mRNA_H-paniculata_contig46411.11588.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A7D9F138_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9F138_PARCT) HSP 1 Score: 75.5 bits (184), Expect = 8.740e-13 Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 3
Query: 153 MDFQAELEEDGSVARYKTRLVAQGFHKWRSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIAGRR-EKVDEFKNNVSQRFRMKDLGSLSRVLGI 506
M F+ EL E+G Y+ + +SL GLKQS R+ N LD++L+ G R+ D +Y + GE ++V ++VD L+IA +K+ +FK N+ +FRMKDLG +S LGI
Sbjct: 259 MGFE-ELSENGVKLVYRLK---------KSLYGLKQSGRNLNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASNNTDKISQFKENMKSKFRMKDLGEISYFLGI 365
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A5D3CT04_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CT04_CUCME) HSP 1 Score: 73.2 bits (178), Expect = 1.270e-12 Identity = 51/132 (38.64%), Postives = 74/132 (56.06%), Query Frame = 3
Query: 120 ITGRAEGDLYEMDFQAELEED-GSVARYKTRLVAQGFHKWRSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIAGRR-EKVDEFKNNVSQRFRMKDLGSLSRVLGIE 509
+ G E DLY +E+ GS A+ KT LV + +SL GLKQS R DDF+ IG RS DP +Y+ + G L+ +YVD +++AG+ K++E + + +F MKDLGS R+LG+E
Sbjct: 8 LHGSLEADLY-------MEQPKGSKAKGKTDLVCK---LKKSLYGLKQSPRFWYKRFDDFINKIGFMRSLYDPCVYYKKLTDGSLMYLL-LYVDDMLLAGKNLTKLNEIREQLKNKFEMKDLGSSKRILGME 128
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT) HSP 1 Score: 74.7 bits (182), Expect = 1.660e-12 Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 3
Query: 153 MDFQAELEEDGSVARYKTRLVAQGFHKWRSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIAGRR-EKVDEFKNNVSQRFRMKDLGSLSRVLGI 506
M F+ EL E+G Y+ + +SL GLKQS R+ N LD++L+ G R+ D +Y + GE ++V ++VD L+IA +K+ +FK N+ +FRMKDLG +S LGI
Sbjct: 300 MGFE-ELSENGVKLVYRLK---------KSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGI 406
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT) HSP 1 Score: 73.9 bits (180), Expect = 2.830e-12 Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 3
Query: 153 MDFQAELEEDGSVARYKTRLVAQGFHKWRSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIAGRR-EKVDEFKNNVSQRFRMKDLGSLSRVLGI 506
M F+ EL E+G Y+ + +SL GLKQS R+ N LD++L+ G R+ D +Y + GE ++V ++VD L+IA +K+ +FK N+ +FRMKDLG +S LGI
Sbjct: 275 MGFE-ELSENGVKLVYRLK---------KSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGI 381
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A0V0IWV1_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0IWV1_SOLCH) HSP 1 Score: 71.6 bits (174), Expect = 1.570e-11 Identity = 52/132 (39.39%), Postives = 72/132 (54.55%), Query Frame = 3
Query: 144 LYEMD-----FQAELEEDGSVARYKTRLVAQGFHK----WRSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIAGRREK-VDEFKNNVSQRFRMKDLGSLSRVLGIE 509
LY+MD Q +L ED + QG +K +SL GLKQ+SR N L + L+ IG +S+ D L+ RD GE ++ +YVD L+I G K + E K+++ RF+MKDLG L LGIE
Sbjct: 117 LYQMDVHNAFLQGDLLEDVYM-EMPQGFQTQGENKVCKLLKSLYGLKQASRQWNQKLTEALLSIGYSQSSYDYSLFTKRD--GEDIAVILIYVDDLLITGNSNKLIQELKDSLHSRFKMKDLGVLKFFLGIE 245
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A8J5ZMU9_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZMU9_9ROSI) HSP 1 Score: 72.0 bits (175), Expect = 1.640e-11 Identity = 36/92 (39.13%), Postives = 61/92 (66.30%), Query Frame = 3
Query: 237 RSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIAGRREKV-DEFKNNVSQRFRMKDLGSLSRVLGIE 509
++L GLKQ+ R + +D +LVG+G +RS ++P LY + +G +T L+V+VY+D L++ G + + +FK + Q F M DLG ++ LG+E
Sbjct: 933 KALYGLKQAPRAWYSRIDSYLVGLGFERSLSEPTLYVKKKNG-KTQLIVSVYIDDLLVTGGDQAILADFKTKMHQMFEMSDLGEMTYFLGME 1023
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A6A7FPR7_9CRUS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FPR7_9CRUS) HSP 1 Score: 70.5 bits (171), Expect = 1.890e-11 Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 3
Query: 237 RSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIAGRREKV-DEFKNNVSQRFRMKDLGSLSRVLGI 506
+SL GLKQS R+ NN L DFLV IG ++S D LY D +++ +YVD +++A V D+ K ++ RF+MKDLG LS LG+
Sbjct: 132 KSLYGLKQSGRNWNNLLHDFLVNIGFEQSFADQCLYTRYKDN--IKIILIIYVDDIILAASNNAVLDDVKISLCNRFKMKDLGKLSWFLGM 220
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A8J5YT98_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YT98_9ROSI) HSP 1 Score: 71.2 bits (173), Expect = 2.490e-11 Identity = 36/92 (39.13%), Postives = 61/92 (66.30%), Query Frame = 3
Query: 237 RSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIA-GRREKVDEFKNNVSQRFRMKDLGSLSRVLGIE 509
++L GLKQ+ R + +D +L+G+G +RS ++P LY +++G +T L+V+VYVD L++ G + + FK + Q F M DLG ++ LG+E
Sbjct: 123 KALYGLKQAPRAWYSRIDSYLIGLGFERSLSEPTLYVKKENG-KTQLIVSVYVDDLLVTEGDQAMLANFKTKMHQMFEMSDLGRMTYFLGME 213
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A8J5YH47_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YH47_9ROSI) HSP 1 Score: 70.9 bits (172), Expect = 2.630e-11 Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 3
Query: 147 YEMDFQAELEEDGSVARYKT-----RLVAQGFHKWRSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIAGRREKV-DEFKNNVSQRFRMKDLGSLSRVLGIE 509
Y +D+ LE +AR T L AQ K + L GLK + R + +D +L+G+G +RS ++P LY +++ G+T L+V+VYVD L++ G + + +FK + Q F M DLG L+ LG+E
Sbjct: 58 YGLDY---LETFALMARLDTIRLLVALAAQMGLK-KPLYGLKHAPRAWYSRIDSYLIGLGFERSLSEPTLYV-KEENGKTQLIVSVYVDDLLVTGGDQAMLVDFKTKMHQMFEMSDLGKLTYFLGME 179
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A8J5ZCY7_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZCY7_9ROSI) HSP 1 Score: 71.2 bits (173), Expect = 2.960e-11 Identity = 37/92 (40.22%), Postives = 61/92 (66.30%), Query Frame = 3
Query: 237 RSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIAGRREKV-DEFKNNVSQRFRMKDLGSLSRVLGIE 509
++L GLKQ+ R + +D +LVG+G +RS ++P LY + +G +T L+V+VYVD L++ G + + +FK + Q F M DLG ++ LG+E
Sbjct: 914 KALYGLKQAPRAWYSRIDSYLVGLGFERSLSEPTLYVKKKNG-KTQLIVSVYVDDLLVTGGDQAILADFKIKMHQMFEMSDLGEMTYFLGME 1004 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig46411.11588.1 >prot_H-paniculata_contig46411.11588.1 ID=prot_H-paniculata_contig46411.11588.1|Name=mRNA_H-paniculata_contig46411.11588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp MARGNGGRMGGVGRKWNMGKRRPGEITGRAEGDLYEMDFQAELEEDGSVAback to top mRNA from alignment at H-paniculata_contig46411:528..1256+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig46411.11588.1 ID=mRNA_H-paniculata_contig46411.11588.1|Name=mRNA_H-paniculata_contig46411.11588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=729bp|location=Sequence derived from alignment at H-paniculata_contig46411:528..1256+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig46411:528..1256+ >mRNA_H-paniculata_contig46411.11588.1 ID=mRNA_H-paniculata_contig46411.11588.1|Name=mRNA_H-paniculata_contig46411.11588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig46411:528..1256+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |