mRNA_H-paniculata_contig46411.11588.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46411.11588.1
Unique NamemRNA_H-paniculata_contig46411.11588.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A7D9F138_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9F138_PARCT)

HSP 1 Score: 75.5 bits (184), Expect = 8.740e-13
Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 3
Query:  153 MDFQAELEEDGSVARYKTRLVAQGFHKWRSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIAGRR-EKVDEFKNNVSQRFRMKDLGSLSRVLGI 506
            M F+ EL E+G    Y+ +         +SL GLKQS R+ N  LD++L+  G  R+  D  +Y  +   GE  ++V ++VD L+IA    +K+ +FK N+  +FRMKDLG +S  LGI
Sbjct:  259 MGFE-ELSENGVKLVYRLK---------KSLYGLKQSGRNLNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASNNTDKISQFKENMKSKFRMKDLGEISYFLGI 365          
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A5D3CT04_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CT04_CUCME)

HSP 1 Score: 73.2 bits (178), Expect = 1.270e-12
Identity = 51/132 (38.64%), Postives = 74/132 (56.06%), Query Frame = 3
Query:  120 ITGRAEGDLYEMDFQAELEED-GSVARYKTRLVAQGFHKWRSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIAGRR-EKVDEFKNNVSQRFRMKDLGSLSRVLGIE 509
            + G  E DLY       +E+  GS A+ KT LV +     +SL GLKQS R      DDF+  IG  RS  DP +Y+ +   G    L+ +YVD +++AG+   K++E +  +  +F MKDLGS  R+LG+E
Sbjct:    8 LHGSLEADLY-------MEQPKGSKAKGKTDLVCK---LKKSLYGLKQSPRFWYKRFDDFINKIGFMRSLYDPCVYYKKLTDGSLMYLL-LYVDDMLLAGKNLTKLNEIREQLKNKFEMKDLGSSKRILGME 128          
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 74.7 bits (182), Expect = 1.660e-12
Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 3
Query:  153 MDFQAELEEDGSVARYKTRLVAQGFHKWRSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIAGRR-EKVDEFKNNVSQRFRMKDLGSLSRVLGI 506
            M F+ EL E+G    Y+ +         +SL GLKQS R+ N  LD++L+  G  R+  D  +Y  +   GE  ++V ++VD L+IA    +K+ +FK N+  +FRMKDLG +S  LGI
Sbjct:  300 MGFE-ELSENGVKLVYRLK---------KSLYGLKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGI 406          
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A7D9HG25_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HG25_PARCT)

HSP 1 Score: 73.9 bits (180), Expect = 2.830e-12
Identity = 46/119 (38.66%), Postives = 69/119 (57.98%), Query Frame = 3
Query:  153 MDFQAELEEDGSVARYKTRLVAQGFHKWRSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIAGRR-EKVDEFKNNVSQRFRMKDLGSLSRVLGI 506
            M F+ EL E+G    Y+ +         +SL GLKQS R+ N  LD++L+  G  R+  D  +Y  +   GE  ++V ++VD L+IA    +K+ +FK N+  +FRMKDLG +S  LGI
Sbjct:  275 MGFE-ELSENGVKLVYRLK---------KSLYGLKQSGRNWNRVLDEYLISDGFVRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKIRQFKENMKSKFRMKDLGEISYFLGI 381          
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A0V0IWV1_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0IWV1_SOLCH)

HSP 1 Score: 71.6 bits (174), Expect = 1.570e-11
Identity = 52/132 (39.39%), Postives = 72/132 (54.55%), Query Frame = 3
Query:  144 LYEMD-----FQAELEEDGSVARYKTRLVAQGFHK----WRSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIAGRREK-VDEFKNNVSQRFRMKDLGSLSRVLGIE 509
            LY+MD      Q +L ED  +         QG +K     +SL GLKQ+SR  N  L + L+ IG  +S+ D  L+  RD  GE   ++ +YVD L+I G   K + E K+++  RF+MKDLG L   LGIE
Sbjct:  117 LYQMDVHNAFLQGDLLEDVYM-EMPQGFQTQGENKVCKLLKSLYGLKQASRQWNQKLTEALLSIGYSQSSYDYSLFTKRD--GEDIAVILIYVDDLLITGNSNKLIQELKDSLHSRFKMKDLGVLKFFLGIE 245          
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A8J5ZMU9_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZMU9_9ROSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.640e-11
Identity = 36/92 (39.13%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  237 RSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIAGRREKV-DEFKNNVSQRFRMKDLGSLSRVLGIE 509
            ++L GLKQ+ R   + +D +LVG+G +RS ++P LY  + +G +T L+V+VY+D L++ G  + +  +FK  + Q F M DLG ++  LG+E
Sbjct:  933 KALYGLKQAPRAWYSRIDSYLVGLGFERSLSEPTLYVKKKNG-KTQLIVSVYIDDLLVTGGDQAILADFKTKMHQMFEMSDLGEMTYFLGME 1023          
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A6A7FPR7_9CRUS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FPR7_9CRUS)

HSP 1 Score: 70.5 bits (171), Expect = 1.890e-11
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  237 RSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIAGRREKV-DEFKNNVSQRFRMKDLGSLSRVLGI 506
            +SL GLKQS R+ NN L DFLV IG ++S  D  LY    D     +++ +YVD +++A     V D+ K ++  RF+MKDLG LS  LG+
Sbjct:  132 KSLYGLKQSGRNWNNLLHDFLVNIGFEQSFADQCLYTRYKDN--IKIILIIYVDDIILAASNNAVLDDVKISLCNRFKMKDLGKLSWFLGM 220          
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A8J5YT98_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YT98_9ROSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.490e-11
Identity = 36/92 (39.13%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  237 RSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIA-GRREKVDEFKNNVSQRFRMKDLGSLSRVLGIE 509
            ++L GLKQ+ R   + +D +L+G+G +RS ++P LY  +++G +T L+V+VYVD L++  G +  +  FK  + Q F M DLG ++  LG+E
Sbjct:  123 KALYGLKQAPRAWYSRIDSYLIGLGFERSLSEPTLYVKKENG-KTQLIVSVYVDDLLVTEGDQAMLANFKTKMHQMFEMSDLGRMTYFLGME 213          
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A8J5YH47_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YH47_9ROSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.630e-11
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  147 YEMDFQAELEEDGSVARYKT-----RLVAQGFHKWRSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIAGRREKV-DEFKNNVSQRFRMKDLGSLSRVLGIE 509
            Y +D+   LE    +AR  T      L AQ   K + L GLK + R   + +D +L+G+G +RS ++P LY  +++ G+T L+V+VYVD L++ G  + +  +FK  + Q F M DLG L+  LG+E
Sbjct:   58 YGLDY---LETFALMARLDTIRLLVALAAQMGLK-KPLYGLKHAPRAWYSRIDSYLIGLGFERSLSEPTLYV-KEENGKTQLIVSVYVDDLLVTGGDQAMLVDFKTKMHQMFEMSDLGKLTYFLGME 179          
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Match: A0A8J5ZCY7_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZCY7_9ROSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.960e-11
Identity = 37/92 (40.22%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  237 RSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*LYFSRDDGGETNLLVAVYVDGLVIAGRREKV-DEFKNNVSQRFRMKDLGSLSRVLGIE 509
            ++L GLKQ+ R   + +D +LVG+G +RS ++P LY  + +G +T L+V+VYVD L++ G  + +  +FK  + Q F M DLG ++  LG+E
Sbjct:  914 KALYGLKQAPRAWYSRIDSYLVGLGFERSLSEPTLYVKKKNG-KTQLIVSVYVDDLLVTGGDQAILADFKIKMHQMFEMSDLGEMTYFLGME 1004          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46411.11588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9F138_PARCT8.740e-1338.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5D3CT04_CUCME1.270e-1238.64Retrovirus-related Pol polyprotein from transposon... [more]
A0A6S7HLY2_PARCT1.660e-1238.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9HG25_PARCT2.830e-1238.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0V0IWV1_SOLCH1.570e-1139.39Putative ovule protein n=1 Tax=Solanum chacoense T... [more]
A0A8J5ZMU9_9ROSI1.640e-1139.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A7FPR7_9CRUS1.890e-1143.96Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J5YT98_9ROSI2.490e-1139.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J5YH47_9ROSI2.630e-1137.01Uncharacterized protein n=1 Tax=Gossypium anomalum... [more]
A0A8J5ZCY7_9ROSI2.960e-1140.22Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46411contigH-paniculata_contig46411:528..1256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size515
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46411.11588.1prot_H-paniculata_contig46411.11588.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46411 572..1079 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930386.0016189-UTR-H-paniculata_contig46411:527..5711622930386.0016189-UTR-H-paniculata_contig46411:527..571Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46411 528..571 +
1691481268.0730915-UTR-H-paniculata_contig46411:527..5711691481268.0730915-UTR-H-paniculata_contig46411:527..571Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46411 528..571 +
1622930386.0511827-UTR-H-paniculata_contig46411:1079..12561622930386.0511827-UTR-H-paniculata_contig46411:1079..1256Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46411 1080..1256 +
1691481268.0970135-UTR-H-paniculata_contig46411:1079..12561691481268.0970135-UTR-H-paniculata_contig46411:1079..1256Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46411 1080..1256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930386.0135012-CDS-H-paniculata_contig46411:571..7661622930386.0135012-CDS-H-paniculata_contig46411:571..766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46411 572..766 +
1691481268.0814397-CDS-H-paniculata_contig46411:571..7661691481268.0814397-CDS-H-paniculata_contig46411:571..766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46411 572..766 +
1622930386.0277107-CDS-H-paniculata_contig46411:980..10791622930386.0277107-CDS-H-paniculata_contig46411:980..1079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46411 981..1079 +
1691481268.0891013-CDS-H-paniculata_contig46411:980..10791691481268.0891013-CDS-H-paniculata_contig46411:980..1079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46411 981..1079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46411.11588.1

>prot_H-paniculata_contig46411.11588.1 ID=prot_H-paniculata_contig46411.11588.1|Name=mRNA_H-paniculata_contig46411.11588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
MARGNGGRMGGVGRKWNMGKRRPGEITGRAEGDLYEMDFQAELEEDGSVA
RYKTRLVAQGFHKWRSLCGLKQSSRDRNNALDDFLVGIGLDRSTTDP*
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mRNA from alignment at H-paniculata_contig46411:528..1256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46411.11588.1 ID=mRNA_H-paniculata_contig46411.11588.1|Name=mRNA_H-paniculata_contig46411.11588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=729bp|location=Sequence derived from alignment at H-paniculata_contig46411:528..1256+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAAATCCGCGGCAAAAGCATTAAGCGGTCCAGAGGCGAAAAAATGGCG CGCGGCAATGGAGGAAGAATGGGGGGCGTTGGTAGAAAATGGAACATGGG AAAGCGAAGACCCGGGGAGATTACCGGTAGGGCAGAAGGCGATCTGTACG AAATGGATTTTCAAGCGGAACTGGAGGAGGACGGCAGCGTGGCACGCTAC AAAACGCGACTGGTGGCTCAAGGTTTTCACAAATGGAGGGTAAGGATTTC TTTGAAACCAGTGCCCCCGTAGCTCGCATGTCGACGTTACGTACTGTTTT TAGCCTGGCCGCCGAACACGACTTCCAATTGAAAGGTATGGACGTAGATG CGGCGTATTTGAACGCCCCGATAGAAGAAGAGCTGTTTGTTAAGCTACCC TCCGAGTTTTCCCCTTCTCCCGAGACATACCGTTTGTGCACCTCCTGCGT AAGAGTTTGTGCGGCCTCAAGCAGAGCAGCCGAGACCGGAATAACGCTCT TGACGATTTTCTTGTTGGGATAGGACTCGACCGTTCCACTACCGACCCAT GATTGTACTTTTCCCGCGACGATGGAGGAGAGACAAACCTTCTGGTGGCC GTCTATGTTGACGGCCTGGTCATTGCTGGCCGTCGTGAGAAAGTAGACGA GTTCAAGAATAACGTAAGTCAGCGTTTTAGGATGAAAGACTTGGGCTCTC TCTCGCGCGTGTTGGGAATAGAAGCACGA
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Coding sequence (CDS) from alignment at H-paniculata_contig46411:528..1256+

>mRNA_H-paniculata_contig46411.11588.1 ID=mRNA_H-paniculata_contig46411.11588.1|Name=mRNA_H-paniculata_contig46411.11588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig46411:528..1256+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCGCGGCAATGGAGGAAGAATGGGGGGCGTTGGTAGAAAATGGAA
CATGGGAAAGCGAAGACCCGGGGAGATTACCGGTAGGGCAGAAGGCGATC
TGTACGAAATGGATTTTCAAGCGGAACTGGAGGAGGACGGCAGCGTGGCA
CGCTACAAAACGCGACTGGTGGCTCAAGGTTTTCACAAATGGAGGATGGC
GCGCGGCAATGGAGGAAGAATGGGGGGCGTTGGTAGAAAATGGAACATGG
GAAAGCGAAGACCCGGGGAGATTACCGGTAGGGCAGAAGGCGATCTGTAC
GAAATGGATTTTCAAGCGGAACTGGAGGAGGACGGCAGCGTGGCACGCTA
CAAAACGCGACTGGTGGCTCAAGGTTTTCACAAATGGAGGAGTTTGTGCG
GCCTCAAGCAGAGCAGCCGAGACCGGAATAACGCTCTTGACGATTTTCTT
GTTGGGATAGGACTCGACCGTTCCACTACCGACCCATGAAGTTTGTGCGG
CCTCAAGCAGAGCAGCCGAGACCGGAATAACGCTCTTGACGATTTTCTTG
TTGGGATAGGACTCGACCGTTCCACTACCGACCCATGA
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