mRNA_H-paniculata_contig4639.11578.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4639.11578.1
Unique NamemRNA_H-paniculata_contig4639.11578.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4639.11578.1 vs. uniprot
Match: A0A6H5KE77_9PHAE (NAD(P)-bd_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KE77_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 2.700e-98
Identity = 175/279 (62.72%), Postives = 218/279 (78.14%), Query Frame = 2 
Query:   59 MKSIQAMTLLLAAIAPAAIAFVTPFAPGWH----QVTSSSAIKMSS------EPFNRRTMVGKSLAALVGGAAVVT---GAGKDLDGVFGVETSASAAGVGSEDSPVGVVGASGK---TGKLAVQGLLRRGEAVRAVTRTGDFPLTQLADGGGVLSTSPGDVTKIDTLKTALAGCGAVLFCASASKKGGNAEAVDYRGVINTAQACVDLGVPRLVIISSGAVTKPDSIGYKVTNIFGNIMTLKRKGELGVEEIYANAPKGVTYTIVRPGGLTDGAPVGP 847
            M +++  T+L+AA  PAA+  V   AP  H    ++   + ++MS+       PF+RR++V +  A L+G AAVVT   G G++L  + GV+T+ASA+  G++ SP+ VVGA GK   TGKLAV+GLL+RG  VRAVTRTG+F L    DGG +++T+ GDVTK DTLK ALAGCGAVLFCASASKKGGNAEAVD +GV+NTAQACV+LGVPRLV+ISSGAVTKPDS+G+KVTN+FGNIMTLKRKGE+G+EEIYA APKGVTYTIVRPGGLTDGA +GP
Sbjct:    1 MPAVRISTVLMAAAVPAAV--VGFLAPSVHTSARRLQQPAGLRMSATEDTSPSPFDRRSLVNRVAAGLLGTAAVVTTAAGTGEELRLLTGVDTAASASEPGTKQSPIAVVGAGGKCRKTGKLAVEGLLKRGRNVRAVTRTGEFSLRG-GDGGDLMTTAAGDVTKTDTLKQALAGCGAVLFCASASKKGGNAEAVDNQGVLNTAQACVELGVPRLVVISSGAVTKPDSLGFKVTNVFGNIMTLKRKGEVGLEEIYAAAPKGVTYTIVRPGGLTDGAVIGP 276
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BLAST of mRNA_H-paniculata_contig4639.11578.1 vs. uniprot
Match: A0A4D9D2R3_9STRA (NAD(P)-bd_dom domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2R3_9STRA)

HSP 1 Score: 155 bits (392), Expect = 9.220e-42
Identity = 98/189 (51.85%), Postives = 128/189 (67.72%), Query Frame = 2 
Query:  290 VETSASAAGVGSEDSPVGVVGASGKTGKLAVQGLLRRGEAVRAVT-------RTGDFPLTQLADGGGVLSTSPGDVTKIDTLKTALAGCGAVLFCASASKKGGNAEAVDYRGVINTAQACVDLGVPRLVIISSGAVTKPDSIGYKVTNIFGN-IMTLKRKGELGVEEIY-ANAPKGVTYTIVRPGGLTD 829
            + +SA AA   S D+PV V+GA GKTG+L VQ LL  G+ VRA++          D P+        +LS + GDVTK DTL  A+ G  AV+F +SASKKGGNA+AVD  GV N A+A +   +PRL++ISSGAVTKPDS GYKVTN+F   IM LK +GE  +  +Y ++AP GVTYT++RPGGL++
Sbjct:   52 IPSSALAASRPSSDAPVAVLGARGKTGRLIVQQLLAEGKHVRALSYQPFEYDAKKDLPVNVDLS---LLSYAIGDVTKYDTLPDAIRGSSAVIFASSASKKGGNAQAVDCDGVENIARAAISEKIPRLLVISSGAVTKPDSFGYKVTNMFARGIMGLKLEGEDRLRALYRSSAPAGVTYTVLRPGGLSN 237
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BLAST of mRNA_H-paniculata_contig4639.11578.1 vs. uniprot
Match: A0A7S2PET6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PET6_9DINO)

HSP 1 Score: 147 bits (371), Expect = 1.970e-39
Identity = 92/188 (48.94%), Postives = 125/188 (66.49%), Query Frame = 2 
Query:  284 FGVETSASAAGVGSEDSPVGVVGASGKTGKLAVQGLLRRGEAVRAVTRTGDFPLTQL-ADGGGVLSTSPGDVTKIDTLKTALAGCGAVLFCASASKKGGNAEAVDYRGVINTAQACVDLGVPRLVIISSGAVTKPDSIGYKVTNIFGNIMTLKRKGELGVEEIYANAPK---GVTYTIVRPGGLTDGA 835
             GV  +A+AA  G    P+ V+GA+GKTG+  V   L+R E V A +RTG   L +L A          GDVT+++TL+  ++G   V+F AS SK+GG+A AVD +G++NTA+AC+D GV RLV++SSGAV++PDS  Y+  N+FGNIM  K  GE  V  +YA+A +   GV YTIVRPGGLT+ A
Sbjct:    1 MGVACTAAAAAAG----PIVVLGANGKTGRQCVLSALQRDERVVATSRTG--VLRELDACAPPRCEARVGDVTRLETLRAVVSGARGVIFAASQSKEGGSARAVDNQGLVNTARACIDAGVQRLVVVSSGAVSRPDSSVYQFLNLFGNIMAEKIAGENQVRALYADAARSGGGVGYTIVRPGGLTEAA 182
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BLAST of mRNA_H-paniculata_contig4639.11578.1 vs. uniprot
Match: A0A836CLV1_9STRA (NADH(P)-binding-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV1_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.560e-38
Identity = 83/169 (49.11%), Postives = 111/169 (65.68%), Query Frame = 2 
Query:  338 VGVVGASGKTGKLAVQGLLRRGEAVRAVTRTGDFPLTQLADGGGVLSTSPGDVTKIDTLKTALAGCGAVLFCASASKKGGNAEAVDYRGVINTAQACVDLGVPRLVIISSGAVTKPDSIGYKVTNIFGNIMTLKRKGELGVEEIYANAPKGVTYTIVRPGGLTDGAPVG 844
            V V+GA+GKTG   V+ LL +G A  A +R+G    ++  D   +L+ +  DVT + ++  A+ G   V+F ASASK GGNAEAVDY+GV+N A+AC++  VPRLVI+SSG V+KP+S  YK  N+FG IM  K  GE  V  +YA +     YTIVRPGGLT   P+G
Sbjct:   42 VTVLGANGKTGTECVKQLLAKGIACTATSRSGSLK-SEFEDPSALLTAAAVDVTNLSSVSAAVKGAKGVIFAASASKGGGNAEAVDYKGVVNAAKACLENNVPRLVIVSSGGVSKPNSPVYKFLNLFGEIMKFKALGEEEVRALYAQSDAPCYYTIVRPGGLTLAPPLG 209
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BLAST of mRNA_H-paniculata_contig4639.11578.1 vs. uniprot
Match: A0A7S4KXB0_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KXB0_GUITH)

HSP 1 Score: 145 bits (365), Expect = 3.010e-38
Identity = 86/180 (47.78%), Postives = 118/180 (65.56%), Query Frame = 2 
Query:  338 VGVVGASGKTGKLAVQGLLRRGEAVRAVTRTG------DFPLTQLADGGGVLSTSPGDVTKIDTLKTALAGCGAVLFCASASKKGGNAEAVDYRGVINTAQACVDLGVPRLVIISSGAVTKPDSIGYKVTNIFGNIMTLKRKGELGVEEIYANAPK-----GVTYTIVRPGGLTDGAPVG 844
            + VVGASG TGK  V  L+RRG  VRA+ R        DF L        ++S   GD+T  DTL+ +L GC A++F ASASKKGG+ + VDY+G++N AQ C+D  + RLV++SSGAV++PDS  YK  N+FG+IM  K +GE  ++ +Y +A +       +YTIVRPGGLT+GA +G
Sbjct:   99 IAVVGASGGTGKECVNALVRRGIPVRAIIRAKTNSKGKDFVLE---GDSSLVSEVIGDITSPDTLRDSLKGCKALIFAASASKKGGDPKQVDYQGLLNCAQLCIDQNIERLVVVSSGAVSRPDSAVYKFLNLFGSIMYWKIQGENEMKGMYKSAREKNPSFACSYTIVRPGGLTEGAALG 275
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BLAST of mRNA_H-paniculata_contig4639.11578.1 vs. uniprot
Match: A0A7S2P9W4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P9W4_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.390e-38
Identity = 99/224 (44.20%), Postives = 132/224 (58.93%), Query Frame = 2 
Query:  182 SEPFNRRTMVGKSLAALVGGAAVVTGAGKDLDGVFGVETSASAAGVGSE-DSPVGVVGASGKTGKLAVQGLLRRGEAVRAVTRTGDFPLTQLADGGGVLSTSPGDVTKIDTLKTALAGCGAVLFCASASKKGGNAEAVDYRGVINTAQACVDLGVPRLVIISSGAVTKPDSIGYKVTNIFGNIMTLKRKGELGVEEIYANA-PKGVTYTIVRPGGLTDGAPVGP 847
            S   NRR  +  S+ AL  G AV         G+   +  A   G+GS  + P+ V+GA G+ G L  + L ++G  V+AVTR+G    + L +    +S   GDVTK  +L  A++G   V+F ASASK GG+A  VDY GV NTA AC+   VP+L +ISSGAVT+P SIG+K+TN+FG IM  K  GE  +   YA A    + YT+VRPGGL+D A  GP
Sbjct:   52 SNVMNRRDALRNSVLALASGIAV--------SGMTPPKAFAEEGGMGSSPEHPIVVLGAGGRCGLLCTKILAKKGLYVKAVTRSGR---SVLDESNKFVSYGAGDVTKPSSLADAVSGSSGVIFAASASKNGGDAAHVDYLGVANTADACIAKKVPKLAVISSGAVTRPTSIGFKITNVFGRIMDYKIAGETELRNAYAAANDASLKYTVVRPGGLSDEASKGP 264
[Close]
BLAST of mRNA_H-paniculata_contig4639.11578.1 vs. uniprot
Match: L1IPP0_GUITC (NAD(P)-bd_dom domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IPP0_GUITC)

HSP 1 Score: 145 bits (365), Expect = 5.170e-38
Identity = 86/180 (47.78%), Postives = 118/180 (65.56%), Query Frame = 2 
Query:  338 VGVVGASGKTGKLAVQGLLRRGEAVRAVTRTG------DFPLTQLADGGGVLSTSPGDVTKIDTLKTALAGCGAVLFCASASKKGGNAEAVDYRGVINTAQACVDLGVPRLVIISSGAVTKPDSIGYKVTNIFGNIMTLKRKGELGVEEIYANAPK-----GVTYTIVRPGGLTDGAPVG 844
            + VVGASG TGK  V  L+RRG  VRA+ R        DF L        ++S   GD+T  DTL+ +L GC A++F ASASKKGG+ + VDY+G++N AQ C+D  + RLV++SSGAV++PDS  YK  N+FG+IM  K +GE  ++ +Y +A +       +YTIVRPGGLT+GA +G
Sbjct:   33 IAVVGASGGTGKECVNALVRRGIPVRAIIRAKTNSKGKDFVLE---GDSSLVSEVIGDITSPDTLRDSLKGCKALIFAASASKKGGDPKQVDYQGLLNCAQLCIDQNIERLVVVSSGAVSRPDSAVYKFLNLFGSIMYWKIQGENEMKGMYKSAREKNPSFACSYTIVRPGGLTEGAALG 209
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BLAST of mRNA_H-paniculata_contig4639.11578.1 vs. uniprot
Match: A0A0G4FGS8_VITBC (NAD(P)-bd_dom domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FGS8_VITBC)

HSP 1 Score: 145 bits (366), Expect = 5.510e-38
Identity = 87/174 (50.00%), Postives = 115/174 (66.09%), Query Frame = 2 
Query:  344 VVGASGKTGKLAVQGLLRRGEAVRAVTRTGDFPLTQLADGGGVLSTSPGDVTKIDTLKTALAGCGAVLFCASASKKGGNAEAVDYRGVINTAQACVDLGVPRLVIISSGAVTKPDSIGYKVTNIF----GNIMTLKRKGELGVEEIYANAPK-GVTYTIVRPGGLTDGAPVGPK 850
            V+GA G+TG+L V+ L + G AVRA TR G  P    A    ++STS  DV  + +++  + GC  V+F ASASK GG A AVDY GV N A+AC++ GV RLV++SSGAVT+PDS+GYK+TN      G+IM  KRKGE  +  +Y ++ K   +YTI+RPGGL D  P GP 
Sbjct:   65 VLGAGGRTGRLIVELLAQEGRAVRAGTR-GPPP----ASSSDLVSTSAIDVKDLPSVRQGVRGCSGVIFAASASKAGGKAAAVDYLGVENVAKACLEEGVERLVLLSSGAVTRPDSVGYKLTNFLTLDKGDIMGNKRKGEDALRALYKSSAKPNQSYTIIRPGGLRDAEPAGPS 233
[Close]
BLAST of mRNA_H-paniculata_contig4639.11578.1 vs. uniprot
Match: A0A7S3Q5A4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q5A4_9STRA)

HSP 1 Score: 145 bits (366), Expect = 9.900e-38
Identity = 86/170 (50.59%), Postives = 108/170 (63.53%), Query Frame = 2 
Query:  329 DSPVGVVGASGKTGKLAVQGLLRRGEAVRAVTR----TGDFPLTQLADGGGVLSTSPGDVTKIDTLKTALAGCGAVLFCASASKKGGNAEAVDYRGVINTAQACVDLGVPRLVIISSGAVTKPDSIGYKVTNIFGNIMTLKRKGELGVEEIYANAPKGVTYTIVRPGGLT 826
            +SP+ V+GA+GKTG   V   + RG  VRA +R    TG++   Q       LST+P DVT   T+  A+ G  AV+F ASASK GG A AVD  G+ N A +C+  G+P LVI+SSGAVTKP S  YK  N+FGNIM  K KGE  V E+Y +A    TYT++RPGGLT
Sbjct:   83 NSPICVIGANGKTGSECVDACISRGINVRATSRGGVYTGEYSSEQF------LSTAPCDVTISSTVDAAIKGSQAVIFAASASKAGGTAAAVDNIGLTNVASSCIRQGIPHLVIVSSGAVTKPSSPVYKFLNLFGNIMAEKIKGEDTVRELYKDASSPCTYTVIRPGGLT 246
[Close]
BLAST of mRNA_H-paniculata_contig4639.11578.1 vs. uniprot
Match: A0A7S0HMC0_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HMC0_9CRYP)

HSP 1 Score: 142 bits (359), Expect = 1.880e-36
Identity = 105/242 (43.39%), Postives = 141/242 (58.26%), Query Frame = 2 
Query:  158 SSSAIKMSSEPFNRRTMVGKSLAALVGGAAVVTGAGKDLDGVFGVETSASA--AGVGSEDSPVGVVGASGKTGKLAVQGLLRRGEAVRAVTRTG------DFPLTQLADGGGVLSTSPGDVTKIDTLKTALAGCGAVLFCASASKKGGNAEAVDYRGVINTAQACVDLGVPRLVIISSGAVTKPDSIGYKVTNIFGNIMTLKRKGELGVEEIYA-----NAPKGVTYTIVRPGGLTDGAPVG 844
            S + I M SE  NRR M+  ++++L             L  VFG+ TS S   A V +  S V VVGA G TGK  V  L+RRG  VRA+ R        DF L        ++S   GD+T  DTL+  L GC A++F ASASKKGG+ + VDY+G++N AQ C+D  + RLV++SSGAV++PDS  YK  N+FG+IM  K +GE  ++ +Y      N     +YTIVRPGGLT+G  +G
Sbjct:   58 SLAVITMVSE--NRRGMLKGAISSL-------------LAPVFGLSTSVSESMAAVPTGGS-VAVVGAGGGTGKECVDALIRRGIPVRAIIRAKTNSKGKDFVLE---GDSSLVSEIVGDITAPDTLRDPLKGCKALIFAASASKKGGDPQKVDYQGLLNCAQLCIDQNIERLVVVSSGAVSRPDSAVYKFLNLFGSIMYWKIQGENEMKSMYKAAKAKNPSFSGSYTIVRPGGLTEGPSLG 280
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4639.11578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE77_9PHAE2.700e-9862.72NAD(P)-bd_dom domain-containing protein n=2 Tax=Ec... [more]
A0A4D9D2R3_9STRA9.220e-4251.85NAD(P)-bd_dom domain-containing protein n=2 Tax=Mo... [more]
A0A7S2PET6_9DINO1.970e-3948.94Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A836CLV1_9STRA2.560e-3849.11NADH(P)-binding-domain-containing protein n=2 Tax=... [more]
A0A7S4KXB0_GUITH3.010e-3847.78Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A7S2P9W4_9STRA3.390e-3844.20Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
L1IPP0_GUITC5.170e-3847.78NAD(P)-bd_dom domain-containing protein n=2 Tax=Gu... [more]
A0A0G4FGS8_VITBC5.510e-3850.00NAD(P)-bd_dom domain-containing protein n=1 Tax=Vi... [more]
A0A7S3Q5A4_9STRA9.900e-3850.59Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S0HMC0_9CRYP1.880e-3643.39Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4639contigH-paniculata_contig4639:537..6654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score302.4
Seed ortholog evalue2.1e-79
Seed eggNOG ortholog2880.D7G1A3
Hectar predicted targeting categorychloroplast
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-12_005240.1
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size852
Cds size792
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4639.11578.1prot_H-paniculata_contig4639.11578.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4639 537..6596 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930384.4610648-CDS-H-paniculata_contig4639:536..6641622930384.4610648-CDS-H-paniculata_contig4639:536..664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4639 537..664 -
1691481267.378025-CDS-H-paniculata_contig4639:536..6641691481267.378025-CDS-H-paniculata_contig4639:536..664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4639 537..664 -
1622930384.4775205-CDS-H-paniculata_contig4639:1431..14871622930384.4775205-CDS-H-paniculata_contig4639:1431..1487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4639 1432..1487 -
1691481267.3925502-CDS-H-paniculata_contig4639:1431..14871691481267.3925502-CDS-H-paniculata_contig4639:1431..1487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4639 1432..1487 -
1622930384.5069654-CDS-H-paniculata_contig4639:3258..33561622930384.5069654-CDS-H-paniculata_contig4639:3258..3356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4639 3259..3356 -
1691481267.4032862-CDS-H-paniculata_contig4639:3258..33561691481267.4032862-CDS-H-paniculata_contig4639:3258..3356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4639 3259..3356 -
1622930384.5198197-CDS-H-paniculata_contig4639:4525..47341622930384.5198197-CDS-H-paniculata_contig4639:4525..4734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4639 4526..4734 -
1691481267.4115365-CDS-H-paniculata_contig4639:4525..47341691481267.4115365-CDS-H-paniculata_contig4639:4525..4734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4639 4526..4734 -
1622930384.5480883-CDS-H-paniculata_contig4639:5285..54661622930384.5480883-CDS-H-paniculata_contig4639:5285..5466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4639 5286..5466 -
1691481267.42057-CDS-H-paniculata_contig4639:5285..54661691481267.42057-CDS-H-paniculata_contig4639:5285..5466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4639 5286..5466 -
1622930384.5624576-CDS-H-paniculata_contig4639:6024..61381622930384.5624576-CDS-H-paniculata_contig4639:6024..6138Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4639 6025..6138 -
1691481267.4296243-CDS-H-paniculata_contig4639:6024..61381691481267.4296243-CDS-H-paniculata_contig4639:6024..6138Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4639 6025..6138 -
1622930384.5740912-CDS-H-paniculata_contig4639:6590..65961622930384.5740912-CDS-H-paniculata_contig4639:6590..6596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4639 6591..6596 -
1691481267.440605-CDS-H-paniculata_contig4639:6590..65961691481267.440605-CDS-H-paniculata_contig4639:6590..6596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4639 6591..6596 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930384.588628-UTR-H-paniculata_contig4639:6596..66541622930384.588628-UTR-H-paniculata_contig4639:6596..6654Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4639 6597..6654 -
1691481267.4526567-UTR-H-paniculata_contig4639:6596..66541691481267.4526567-UTR-H-paniculata_contig4639:6596..6654Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4639 6597..6654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4639.11578.1

>prot_H-paniculata_contig4639.11578.1 ID=prot_H-paniculata_contig4639.11578.1|Name=mRNA_H-paniculata_contig4639.11578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=264bp
MKSIQAMTLLLAAIAPAAIAFVTPFAPGWHQVTSSSAIKMSSEPFNRRTM
VGKSLAALVGGAAVVTGAGKDLDGVFGVETSASAAGVGSEDSPVGVVGAS
GKTGKLAVQGLLRRGEAVRAVTRTGDFPLTQLADGGGVLSTSPGDVTKID
TLKTALAGCGAVLFCASASKKGGNAEAVDYRGVINTAQACVDLGVPRLVI
ISSGAVTKPDSIGYKVTNIFGNIMTLKRKGELGVEEIYANAPKGVTYTIV
RPGGLTDGAPVGPK
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mRNA from alignment at H-paniculata_contig4639:537..6654-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4639.11578.1 ID=mRNA_H-paniculata_contig4639.11578.1|Name=mRNA_H-paniculata_contig4639.11578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6118bp|location=Sequence derived from alignment at H-paniculata_contig4639:537..6654- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGACTCGCCAGGGGGGGAGAGTTACTAGCATCGTGAGGTGTAAGAGATT
CATCCAACATGAAGGTAAAGCGGGGCATCGTCGCGTATGTTTGTCGTGTT
GACCTTCCACCGGGGCGTATGTACCCAGGAACATTCCAAGATTCAACACT
TTGAAGGAGGGGTCGTAGGCACCCATGACAAATCCGAAAGTCTAAAAGCT
TGTGAAGTCGTGTGTGGTGGTAGCATGCCAAGACATGAAATTAACGTCGC
GGTGCCTGTGTATATCTCGTTCGCCGTGCGTTCTCTCCTTGTTGGTGACG
GTGTTGTCGCTGCTGCTGTGTCGTCATACCATTTATTGCAGCAACAAAAT
AACCATACAAAGGATGTTTTTACTCAGGGTTTACTGACTGTTGAGTATTT
TGCGACTGCACTGGTGTTTCTGCCTTTCGGCACGAAATCTCTCTCCCCCT
CCTTCTCTTTCCTGTCCTGCCCCTTCCCCCCCCCCCCCCCCCCCCCCCCC
CCGCCATCGGACTCAGTCTATCCAGGCTATGACCTTGCTGTTGGCGGCGA
TTGCGCCTGCCGCGATAGCATTTGTTACTCCCTTTGCGCCGGGTTGGCAC
CAGGTCACTTCTTCATCGGCGATAAAAATGGTCAGTGGTTGTACCGCCAG
TCGTCCTCTTGCCTTGTCTATGCCAAAACTGCAACTTGTTGCCCCCGCTG
CAGTTGGAAAGCGTCCCTGGAACGCAGCCGATCGTCTTTCACCTCCCCCT
CCCCCCCCTCGTCCCTCCGGAGTAGACGGGATGAGAGGTCGGTAAGGGAG
GGATCAAATTGTTGCCGTTGTGTCGTTCGTTGGTGTTGTCCGAACGGGAT
TTTTGGGGACGCATCAAAGAGATCGGAAACTTTTTTCATGCCTCTCTGTA
TAATAAACGAAGGACGGACGAACACAACTCATCATGACATACTTGCATAC
TTGTGAAATCGATATACCGCATGTGTATCATCACCGCATGTATATCATCA
CGACAACGCTTGGAATACACGGATAAATATAGAGACAGAATGGCAAGACG
ACAGTGCAGTGCTCTCTATCGCTTGCTGATATTGTCGGCACTCCAGCAGC
CTGCGTCTGTACAGTGCACACCCACCCACAGCAACCAATATCTCCCCCTT
TCTTGGCCCGCCTCCCTCCATTCTGCCAACATTTTCAGTCGTCAGAACCC
TTCAACCGGAGAACGATGGTCGGCAAGAGCTTGGCCGCCTTGGTAGGCGG
AGCGGCCGTTGTGACGGGGGCGGGGAAAGACCTAGACGGTGTGTTTGGGG
TTGAAACCTCCGCCTCAGCTGCGGGAGTTGGTAGTGAAGACAGCCCGGTG
GGTGTGGTCGGCGCTAGTGGTGAGTTCGTTTGCACGCCAAACATGAACCG
CTCTGCGGTTGCACAACTAGTTGTAACAGACGTAATGTAGTCAGTTGACA
CAAATATTTGCGTACAACAACAGTCAGTATGGTCACAATAGTAGTACCTG
ACCTCGATACCTACTATACCAAAAATAAATACTCGTTTCTTGCAGTGCAT
TTTGGGGCATTTTGCATTGTTTGCGAAACCGATATATTGGTTGTACCTTT
CTCTCTCCGTTCATGTGTCACGCGTATGTGCATACTATATAATTTTGGCG
ATCGTTGAAACCCTTTGTCGGGGCGTTGTTGGCGTGTGTTTCGAGGGTGT
CGAGGAAAACACGACACCCTCTTGTATGATCGTCTTTACGGTAGTTCTTC
TCCCAGCACATTCCGCCAACAGCAGAACCATTCTGTATTCGTGACATGAT
GGGTGACGCTTCTAGTGCACATGCTGCTGTGTTTTGCCCGGTTGTGCGGA
TGACAGCAGTCTTTGCTGCACTCCCCTGACCGCTATACTTGCTGACTGTT
GTGCCGATACTGACATACAGGGAAGACTGGAAAGCTGGCGGTGCAGGGGC
TTCTGAGGAGAGGAGAAGCAGTCAGAGCGGTGACACGAACCGGCGATTTT
CCGTTAACCCAGCTCGCCGACGGCGGAGGGGTTCTGTCCACTAGCCCCGG
AGACGTTACCAAGATCGATACGCTCAAGACAGCCCTGGCAGGCTGCGGGG
CCGTCTTGTTCTGCGCGAGTGCAAGCAAGGTGCGTTGGTCGGCGTCTTTA
CTTTCTGTTGGCGGACTTTAGCGATTTGCACGTGGTGTGTGCCTTTGGGT
TGTGTCGCGGTTTGATCCGATGCAAACACGTGAGTTGCTGCAGATTGTAC
GTTGGGTGTTTTTTGCACTATTACGGATCTACCTGTGGAAAGAAAAACTC
CGCTGTTCGTTGTTCTTGTACTACATTGTATACAACAGTAAATAGTAGTA
GGTGTACTGTTGATTGTGAGACTGCTGTTGTGGTGTTGTATCCAGTCAAG
GAGGGAGTCAGTGCCAGTGGGGGTAAACAGGTCTGTGTTTGTTGTAGTTG
ATGTCGGCGGCAGGTCGGGGATGTTGTGTGCTTTGAGGTGTTTCGTGCAG
CGGCATAGCCGTTGAGTAGGCGGGCTGTTGGTTTTGGGCCGATATTGCGG
CCGGTGAAAACGATACGCGCTGTTGCCTGTCGGCGCTCAATTATTTCACT
CGATGTGTATATGAGACAGTCAGTAGAGACGAGCTGTCAAAGCAGAGACC
CAGTATCCCTGAGTGTATAGATGGAATTCAATATATCCAGGCGAGAGTGC
AAGAGCTCCTGGCCAGGCAACTCCGCCAACAAGTACGTACCTCCTCAGAT
AACAACGCCACCGTCAGTCCCACTAGTGAGATCAGTTTTGATTTAATTTT
TCGAAGTCTCCCCGACTGTGGGTTTCATGTACACGGAGCTTCTCTCTGTA
GAAATAGGCGCAGGTGTGAAAAAGACGTACAGTTTACAGTAGGGGACACA
AGGAATAGTATTGAGTCAGACGGTGCCAGAGCAGCGCCCCATCGTTTTAT
TTTTTCTATTTTTCCCTCCAGAATACAACTAGAAAAGTTAGCTGGCAATT
CTGATTTATTCAGGCATTAACCGGATGGTTTTCATTATACTATTTTCAAG
TAGACCGTTCAATTCGATGTTGCCAACCAACCGACCACCCGACCTCCCAA
TAGCGACGTACGTCTGACTTGCTTCCAGTTCTAATCATTTTCGTACACAG
TTGTAGTCATCTTCGCAGCTACCGCTGAGCTACCGCTGAGACTGCATGCA
TTGTTCGCGCTGCATGTTCCCCCTTGATTTGACGCGCACGCGCGGCGGCG
GTGGCATCGGCGGGTGGGGGGTGGGCGGGCGTGCTCGTGTTGATACAGAA
AGGCGGGAATGCAGAGGCGGTAGATTACCGGGGTGTGATCAACACGGCTC
AGGCTTGTGTTGATCTCGGCGTACCGCGGCTAGTGATCATCTCCAGGTAA
GGTGCAACGCGCAGGGGAGGATCGATATCTGGAAGCCGTGCTCAGACGGT
ACGCCGACAGTCGGGAAAAGATTTTGTCTTTCTGCAAACAAGTACTTTAT
TTGTAACAAAAACACACACAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGGCATCTTCATCTGCCTGTTCTTGAAGTCTTGTGCCCCTGCTGACGT
TGCGACAGCCGTCCGATCAATCAACTGTCCGACGCCGACATGCGCTAAGC
CAAATAAATGTCCGGTCTCCCTATTTGTCACGAATATACGTGGTAGCCTC
TGCCGTCGGGGTTATTGCTCCCCTTTTTTTGCTCTTGATAAACATCGTCC
TCTGGGGCGCTGCTCTTTCTCTGGATAATGATGTATGCTAGTGTGGACTT
CCTGCCCGCCACTCCCCGAGTATCTGCAGCTTACAGCGTATGGGTGCCCC
CCGGTTAAAACGATTTGGCGCCGAAATATCTATATATACTGAGTGAAGCG
TAATGACGCCACAAAATGTAACGTCTGACTCGTGCAGCGGTGCAAGCTTA
CTTCGCAGTTTTGTTTTGAGCCGGCCCTTTAAATCTCTGACACGCCTATA
TCAAGTGAGCACAAGTCCACGGTCTCCCCGTTTTTATTTTTCACACATGA
GTATAGAAAGTACTTGGTTTTACTGCTTCCACCACACACTACGGTAGGCA
GCAGGAAGGGTAATACAATAATTTGCGTAAGCGTTGTCGCCAGTGTTTGT
GCTGTCTGACTGAGGTGGGGGTGGATAATAGCGGGGTGTAATAAAAGCAC
CGTTCGTCCCCCGAAGAATTGGAACCAATTGCGCCCCTGCTGTCTCCCTG
GGGCGCGTGAAGTTGGCAGGTGGGAGAGATGATTTCCAGATCCCACGGCC
CCGAGAATATGGCCAGAGATGTTTCATCTGCACACAGGAGGGGGGGCAGT
AGTCTGCCTGCATATTATCGTACTGTACCGATACCCCGGTAACAACACAG
AACAATAGGGTACCCAGGGGATAAATTATTTATCGGAAAATTCAAGTATT
AGAAAAAAAGGGCAGAACGTGCCGTGGGAGCCTGATCAGCATAGCTATCT
ATTAATGTACATGAGTGAGGCAACTACCTCCGCTTGACGTGCTAACCGTG
CTTGCTGCGCATGGCATCACGACATGCCACACCTGTGGGAAGTTGTTGAT
GATTTTTGTTACACAATGTGCCGCCCAACGCTTTCAAACGTACGTCGGAT
GGAGCACTATGCTGTGCTCTTCACCGAGGAATCTCTGCCAAAGGAAATCC
CAGTTCACGTTCACGCTTGTACAGAGGGGTTGATATGTCGGCCATTGTAC
AATATCTCAAGGGAGAGCTGTTGTATTCTGCCCTATCCATGCCCATGAAC
GATTTTACCCGGAAAATATGCTCGAAATTTTATCGCCGGTGAGTGGTATT
CGATAGGGAAGCGTATGTACTCTTTCAAGTGCGGCACTACTAATCAAATT
GCGTCTGGTTTCGTGAACACGACCTCCCCGACAGTTTATTCGTGGTAGAG
GCGTTCTAGTCCTGCATTCCGCTGATCTTGGGGCGGCAGCATCTGCGACC
ACTTAGCAGCAACCAGCTCTTGTTTTTTTTCCTTGAAGCACAACGGCAAA
CAGTGCATTGAGTGCAAGTGATCCCCATGCCCGCCCCAATGGCTCGTAAA
TCCTGACCACTGCCACATTGTTGCTGTTTTTTTTTTCGTGCGTTTGTTTG
CAATCGGTGCTGGGCAGTGGAGCGGTGACAAAGCCGGACAGCATCGGGTA
CAAGGTTACCAACATCTTCGGAAGTGAGTAGTGATATCTCTATCCACAAA
GACCGATACCTTCAGCCCAACTAAAGGTCTGTATATTTTTCATCGTTCAT
GTTGGTATTTACCAGGCCAACTGTTCCCCCTCCTTCTACCACTGCCGTCC
CCCGCCGCCTCGCCGCCCCACCAGCCTGGCCGGCGAAAACCTGTCATGCG
TTTTCATGAGTACCCCCCCCCCCCCCCCCCCTTCCCTGCGGACTGCGGGC
AATATAGGCGGCAAGTCCTGGTGCTGAAATTGCTGCGCACGAGCCGTGAA
AAACGTGTCTCGAACACTTAACTTTTTCGTTTGTCATGTTGCTGAGAGAG
ATTAACGTGAAAATGAGCTGCAGGTTTGTTTTTGCTGAATTTGTTAAACA
AGGACGACCTGAATGGAGCGACACACGCCTAACTTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGATACGTACTCCTTTTGTGACTCCGCCGTGAAAATAC
CCCCGCAATATCTATGCACTCTATTGTCACCATGCTTCAAGAGGACTACA
CCACGACCTGCACCTTCCCCCCGAACGGTGTGGCAACACGGTTGCATACG
AAGCCATTCGGGATGAAGGTCACCACCCTCATGCTGAGGTCTAAATAACC
GCCCGGCGCCTCGCAAGACGGTAGGGCCCACAACAGCTGACTCTGGGTGC
TGCTGCTGTACATGCCGTACTCCTCTCCTCCGCGACCTTGACCTTCGTCC
GCGCTTATCCTCTTCTAAATATATGTGTTTTGCTTTTCAGATATCATGAC
GCTCAAGAGGAAGGGGGAGCTTGGGGTCGAGGAGATCTACGCGAACGCTC
CCAAGGGAGTGACATACACTATCGTGCGACCAGGTGGCCTCACCGATGGA
GCCCCCGTCGGTCCGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4639:537..6654-

>mRNA_H-paniculata_contig4639.11578.1 ID=mRNA_H-paniculata_contig4639.11578.1|Name=mRNA_H-paniculata_contig4639.11578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1584bp|location=Sequence derived from alignment at H-paniculata_contig4639:537..6654- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGATGAAGTCTATCCAGGCTATGACCTTGCTGTTGGCGGCGATTGC
GCCTGCCGCGATAGCATTTGTTACTCCCTTTGCGCCGGGTTGGCACCAGG
TCACTTCTTCATCGGCGATAAAAATGTCTATCCAGGCTATGACCTTGCTG
TTGGCGGCGATTGCGCCTGCCGCGATAGCATTTGTTACTCCCTTTGCGCC
GGGTTGGCACCAGGTCACTTCTTCATCGGCGATAAAAATGTCGTCAGAAC
CCTTCAACCGGAGAACGATGGTCGGCAAGAGCTTGGCCGCCTTGGTAGGC
GGAGCGGCCGTTGTGACGGGGGCGGGGAAAGACCTAGACGGTGTGTTTGG
GGTTGAAACCTCCGCCTCAGCTGCGGGAGTTGGTAGTGAAGACAGCCCGG
TGGGTGTGGTCGGCGCTAGTGTCGTCAGAACCCTTCAACCGGAGAACGAT
GGTCGGCAAGAGCTTGGCCGCCTTGGTAGGCGGAGCGGCCGTTGTGACGG
GGGCGGGGAAAGACCTAGACGGTGTGTTTGGGGTTGAAACCTCCGCCTCA
GCTGCGGGAGTTGGTAGTGAAGACAGCCCGGTGGGTGTGGTCGGCGCTAG
TGGGAAGACTGGAAAGCTGGCGGTGCAGGGGCTTCTGAGGAGAGGAGAAG
CAGTCAGAGCGGTGACACGAACCGGCGATTTTCCGTTAACCCAGCTCGCC
GACGGCGGAGGGGTTCTGTCCACTAGCCCCGGAGACGTTACCAAGATCGA
TACGCTCAAGACAGCCCTGGCAGGCTGCGGGGCCGTCTTGTTCTGCGCGA
GTGCAAGCAAGGGAAGACTGGAAAGCTGGCGGTGCAGGGGCTTCTGAGGA
GAGGAGAAGCAGTCAGAGCGGTGACACGAACCGGCGATTTTCCGTTAACC
CAGCTCGCCGACGGCGGAGGGGTTCTGTCCACTAGCCCCGGAGACGTTAC
CAAGATCGATACGCTCAAGACAGCCCTGGCAGGCTGCGGGGCCGTCTTGT
TCTGCGCGAGTGCAAGCAAGAAAGGCGGGAATGCAGAGGCGGTAGATTAC
CGGGGTGTGATCAACACGGCTCAGGCTTGTGTTGATCTCGGCGTACCGCG
GCTAGTGATCATCTCCAGAAAGGCGGGAATGCAGAGGCGGTAGATTACCG
GGGTGTGATCAACACGGCTCAGGCTTGTGTTGATCTCGGCGTACCGCGGC
TAGTGATCATCTCCAGTGGAGCGGTGACAAAGCCGGACAGCATCGGGTAC
AAGGTTACCAACATCTTCGGAATGGAGCGGTGACAAAGCCGGACAGCATC
GGGTACAAGGTTACCAACATCTTCGGAAATATCATGACGCTCAAGAGGAA
GGGGGAGCTTGGGGTCGAGGAGATCTACGCGAACGCTCCCAAGGGAGTGA
CATACACTATCGTGCGACCAGGTGGCCTCACCGATGGAGCCCCCGTCGGT
CCGAAAATATCATGACGCTCAAGAGGAAGGGGGAGCTTGGGGTCGAGGAG
ATCTACGCGAACGCTCCCAAGGGAGTGACATACACTATCGTGCGACCAGG
TGGCCTCACCGATGGAGCCCCCGTCGGTCCGAAA
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