mRNA_H-paniculata_contig4637.11576.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4637.11576.1
Unique NamemRNA_H-paniculata_contig4637.11576.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4637.11576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4637contigH-paniculata_contig4637:1763..2385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size623
Cds size339
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930384.373056-UTR-H-paniculata_contig4637:1762..20461622930384.373056-UTR-H-paniculata_contig4637:1762..2046Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4637 1763..2046 +
1691481267.349229-UTR-H-paniculata_contig4637:1762..20461691481267.349229-UTR-H-paniculata_contig4637:1762..2046Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4637 1763..2046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930384.3908691-CDS-H-paniculata_contig4637:2046..23851622930384.3908691-CDS-H-paniculata_contig4637:2046..2385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4637 2047..2385 +
1691481267.3585722-CDS-H-paniculata_contig4637:2046..23851691481267.3585722-CDS-H-paniculata_contig4637:2046..2385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4637 2047..2385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4637.11576.1prot_H-paniculata_contig4637.11576.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4637 2047..2385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4637.11576.1

>prot_H-paniculata_contig4637.11576.1 ID=prot_H-paniculata_contig4637.11576.1|Name=mRNA_H-paniculata_contig4637.11576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MINNAYTVSCLYLCLLNRFTGVCYAKCWLTCTLCRIRVLPVGADLTTKCR
PVCSLEFARPLHLGYAEVFVSSSSESARFMYHPFLLSVDACVQQSVCNLF
SNVVNGRDVNFD*
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mRNA from alignment at H-paniculata_contig4637:1763..2385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4637.11576.1 ID=mRNA_H-paniculata_contig4637.11576.1|Name=mRNA_H-paniculata_contig4637.11576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=623bp|location=Sequence derived from alignment at H-paniculata_contig4637:1763..2385+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACCAGCTGTCAAGGAGACCACGAGAGTAATGTGGGTCGGCACCAAGAT
GTATCAGGTGTGCATCTTTGTACTCGAGAGACAGTACAGTACACTCTGTG
CTTTGAACACACACTTTCGAAACACTTTTTACATACTTTACCCCAGTGTT
TTGGTACTCTATGAGCATCACTGCACTGTACAGACATTACTGTACTGCAC
AAGCAGTACGATACCGCCTCTCCTTGGGTGTGTTATAAATAACCACGTTA
CTGTCTGTAGCCTGTTTTGGCAGACAGTTTTTATATGATTAACAATGCAT
ACACGGTAAGCTGTCTGTACCTCTGCCTTCTGAACCGTTTCACCGGGGTT
TGTTATGCAAAGTGTTGGCTCACTTGCACTCTCTGTAGAATAAGAGTACT
GCCTGTTGGTGCTGACCTTACCACGAAATGCCGACCCGTTTGTAGCCTTG
AGTTTGCGCGCCCGCTACACCTGGGTTATGCTGAAGTCTTCGTATCCTCT
TCGAGTGAGAGTGCTCGTTTTATGTACCATCCGTTCCTCCTAAGTGTTGA
CGCTTGCGTACAGCAAAGTGTGTGCAACCTCTTCTCAAATGTCGTAAATG
GCCGCGACGTCAACTTTGATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4637:1763..2385+

>mRNA_H-paniculata_contig4637.11576.1 ID=mRNA_H-paniculata_contig4637.11576.1|Name=mRNA_H-paniculata_contig4637.11576.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig4637:1763..2385+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTAACAATGCATACACGGTAAGCTGTCTGTACCTCTGCCTTCTGAA
CCGTTTCACCGGGGTTTGTTATGCAAAGTGTTGGCTCACTTGCACTCTCT
GTAGAATAAGAGTACTGCCTGTTGGTGCTGACCTTACCACGAAATGCCGA
CCCGTTTGTAGCCTTGAGTTTGCGCGCCCGCTACACCTGGGTTATGCTGA
AGTCTTCGTATCCTCTTCGAGTGAGAGTGCTCGTTTTATGTACCATCCGT
TCCTCCTAAGTGTTGACGCTTGCGTACAGCAAAGTGTGTGCAACCTCTTC
TCAAATGTCGTAAATGGCCGCGACGTCAACTTTGATTAAATGATTAACAA
TGCATACACGGTAAGCTGTCTGTACCTCTGCCTTCTGAACCGTTTCACCG
GGGTTTGTTATGCAAAGTGTTGGCTCACTTGCACTCTCTGTAGAATAAGA
GTACTGCCTGTTGGTGCTGACCTTACCACGAAATGCCGACCCGTTTGTAG
CCTTGAGTTTGCGCGCCCGCTACACCTGGGTTATGCTGAAGTCTTCGTAT
CCTCTTCGAGTGAGAGTGCTCGTTTTATGTACCATCCGTTCCTCCTAAGT
GTTGACGCTTGCGTACAGCAAAGTGTGTGCAACCTCTTCTCAAATGTCGT
AAATGGCCGCGACGTCAACTTTGATTAA
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