mRNA_H-paniculata_contig4637.11575.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4637.11575.1
Unique NamemRNA_H-paniculata_contig4637.11575.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4637.11575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4637contigH-paniculata_contig4637:2..584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size583
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4637.11575.1prot_H-paniculata_contig4637.11575.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4637 98..442 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930384.2779396-UTR-H-paniculata_contig4637:1..971622930384.2779396-UTR-H-paniculata_contig4637:1..97Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4637 2..97 +
1691481267.3134406-UTR-H-paniculata_contig4637:1..971691481267.3134406-UTR-H-paniculata_contig4637:1..97Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4637 2..97 +
1622930384.320451-UTR-H-paniculata_contig4637:442..5841622930384.320451-UTR-H-paniculata_contig4637:442..584Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4637 443..584 +
1691481267.334302-UTR-H-paniculata_contig4637:442..5841691481267.334302-UTR-H-paniculata_contig4637:442..584Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4637 443..584 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930384.3048358-CDS-H-paniculata_contig4637:97..4421622930384.3048358-CDS-H-paniculata_contig4637:97..442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4637 98..442 +
1691481267.3242028-CDS-H-paniculata_contig4637:97..4421691481267.3242028-CDS-H-paniculata_contig4637:97..442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4637 98..442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4637.11575.1

>prot_H-paniculata_contig4637.11575.1 ID=prot_H-paniculata_contig4637.11575.1|Name=mRNA_H-paniculata_contig4637.11575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MHHPPLSPRSVQRLRRALARVRCGILACFCGVKSDGRPTLTCVFRETAFP
SLSCFTTRPHNFPDYFSLTPNSLANLDLTPAGSLFFSRRKSKHVSQSKRV
PALLIQLAIFAPHR*
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mRNA from alignment at H-paniculata_contig4637:2..584+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4637.11575.1 ID=mRNA_H-paniculata_contig4637.11575.1|Name=mRNA_H-paniculata_contig4637.11575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=583bp|location=Sequence derived from alignment at H-paniculata_contig4637:2..584+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACGCTCCCCCCATACTCTACTCTTCAGAGACGCAAAAAACCCCAACTC
GTTGGTGTTAAAATCTGACGATTGCGCTGGCTGCGTCACGAGCTTTATGC
ACCACCCCCCCCTCTCTCCTCGCTCTGTTCAGCGTCTTCGGCGTGCCCTT
GCCCGTGTGCGGTGTGGGATCTTGGCCTGCTTCTGCGGCGTAAAATCTGA
CGGCCGGCCAACTCTTACTTGCGTTTTCAGAGAGACCGCATTCCCTTCCT
TGAGTTGCTTTACCACGCGCCCCCACAACTTCCCCGATTATTTCTCGTTG
ACCCCGAATTCTTTAGCCAACTTGGACCTGACGCCTGCCGGAAGTCTTTT
CTTCTCCCGGAGGAAGAGCAAGCACGTATCGCAGAGCAAGCGCGTTCCGG
CTCTCCTCATTCAGCTCGCGATTTTTGCCCCTCACAGATGAAGAGTTCCC
ACCAGCTGATGGAGATTCGAACCCAGCGGACGGGCTCTGCGCGCTCGCAT
TCGCGTCTCAATGGATTTGTAGTCCGTTTGGGTGGTTGTAGTAATTTGTA
CGAGTGTGTGGGGCTCTGGGGGCAAGCGAAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4637:2..584+

>mRNA_H-paniculata_contig4637.11575.1 ID=mRNA_H-paniculata_contig4637.11575.1|Name=mRNA_H-paniculata_contig4637.11575.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig4637:2..584+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACCACCCCCCCCTCTCTCCTCGCTCTGTTCAGCGTCTTCGGCGTGC
CCTTGCCCGTGTGCGGTGTGGGATCTTGGCCTGCTTCTGCGGCGTAAAAT
CTGACGGCCGGCCAACTCTTACTTGCGTTTTCAGAGAGACCGCATTCCCT
TCCTTGAGTTGCTTTACCACGCGCCCCCACAACTTCCCCGATTATTTCTC
GTTGACCCCGAATTCTTTAGCCAACTTGGACCTGACGCCTGCCGGAAGTC
TTTTCTTCTCCCGGAGGAAGAGCAAGCACGTATCGCAGAGCAAGCGCGTT
CCGGCTCTCCTCATTCAGCTCGCGATTTTTGCCCCTCACAGATGAATGCA
CCACCCCCCCCTCTCTCCTCGCTCTGTTCAGCGTCTTCGGCGTGCCCTTG
CCCGTGTGCGGTGTGGGATCTTGGCCTGCTTCTGCGGCGTAAAATCTGAC
GGCCGGCCAACTCTTACTTGCGTTTTCAGAGAGACCGCATTCCCTTCCTT
GAGTTGCTTTACCACGCGCCCCCACAACTTCCCCGATTATTTCTCGTTGA
CCCCGAATTCTTTAGCCAACTTGGACCTGACGCCTGCCGGAAGTCTTTTC
TTCTCCCGGAGGAAGAGCAAGCACGTATCGCAGAGCAAGCGCGTTCCGGC
TCTCCTCATTCAGCTCGCGATTTTTGCCCCTCACAGATGA
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