mRNA_H-paniculata_contig4636.11574.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4636.11574.1
Unique NamemRNA_H-paniculata_contig4636.11574.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4636.11574.1 vs. uniprot
Match: D7FXS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS0_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 3.640e-33
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 1
Query:    1 MVEAGRDKAVSYSVVINPNSGPGYEVNDLYQQGMYDLWDAGVEVLCYVATGFGNTAIDTVQRDIDKYEELYPDLCGGFFFDEGPGTDENTYK 276
            MVEA ++  VSYSVVINP+SGPG    + Y  G+ +L + GVEVLCYV TGFG+T + TV  DIDKYE  YP +C G+FFDEGPG ++N +K
Sbjct:    1 MVEAAQNTTVSYSVVINPSSGPGDSAEEAYTTGITELLNVGVEVLCYVPTGFGSTDVSTVTADIDKYESFYPGMCDGYFFDEGPGGEDNAWK 92          
BLAST of mRNA_H-paniculata_contig4636.11574.1 vs. uniprot
Match: A0A6H5L2B5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B5_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 6.580e-31
Identity = 53/92 (57.61%), Postives = 68/92 (73.91%), Query Frame = 1
Query:    1 MVEAGRDKAVSYSVVINPNSGPGYEVNDLYQQGMYDLWDAGVEVLCYVATGFGNTAIDTVQRDIDKYEELYPDLCGGFFFDEGPGTDENTYK 276
            MV+A ++  VSYSVVINP+SGPG    + Y  G+ +L + GVEVLCYV TGFG+T + TV  D+DKYE  YP +C GFFFDEGPG ++N +K
Sbjct:   91 MVDAAQNTTVSYSVVINPSSGPGDSAEEAYTTGITELLNVGVEVLCYVPTGFGSTDVSTVTADVDKYESFYPGMCDGFFFDEGPGGEDNAWK 182          
BLAST of mRNA_H-paniculata_contig4636.11574.1 vs. uniprot
Match: UPI000738178D (spherulin-4 n=1 Tax=Diachasma alloeum TaxID=454923 RepID=UPI000738178D)

HSP 1 Score: 68.6 bits (166), Expect = 7.270e-12
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 1
Query:   10 AGRDKAVSYSVVINPNSGPGYEVNDLYQQGMYDLWDAGVEVLCYVATGFGNTAIDTVQRDIDKYEELYPDLCGGFFFDE 246
            A  + +V +  ++NPNSGPG +++  Y  G+  L + GV+ + YV T +G  A DTV  ++DKY   YP +  GFF DE
Sbjct:   44 ASSNPSVEFVAIVNPNSGPGSDLDSTYVTGIDGLTEVGVKCIGYVRTDYGAVATDTVTANMDKYTTWYPKI-SGFFLDE 121          
BLAST of mRNA_H-paniculata_contig4636.11574.1 vs. uniprot
Match: UPI001C9D173F (spherulin-4-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9D173F)

HSP 1 Score: 68.2 bits (165), Expect = 9.910e-12
Identity = 35/90 (38.89%), Postives = 50/90 (55.56%), Query Frame = 1
Query:   10 AGRDKAVSYSVVINPNSGPGYEVNDLYQQGMYDLWDAGVEVLCYVATGFGNTAIDTVQRDIDKYEELYPDLCGGFFFDE--GPGTDENTY 273
            A  + +V +  V+NPNSGPG  ++ +Y   +  L  AGV+ + YV T +G  A  T   ++DKY   YP +  GFFFDE    G  E+ Y
Sbjct:   45 ASSNPSVEFIAVVNPNSGPGDNIDAIYGTAIAQLASAGVKCIGYVPTNYGAVAAKTATENMDKYARWYP-IISGFFFDEMTNIGNKESYY 133          
BLAST of mRNA_H-paniculata_contig4636.11574.1 vs. uniprot
Match: D8LCQ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCQ3_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.930e-11
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    1 MVEAGRDKAVSYSVVINPNSGPGYEVN-DLYQQGMYDLWDAGVEVLCYVATGFGNTAIDTVQRDIDKYEELYPDLCGGFFFDE 246
            M +AG D  VS   + NP SGPG E +   Y +GM  L D+GVEV+ YVA+G+G  +   V+ DID+Y+E Y +   G F DE
Sbjct:   24 MKDAG-DAGVSVVAIANPGSGPGTEGDRGPYSKGMQALRDSGVEVIGYVASGYGRRSEIQVKADIDRYKEWYGEWLSGIFLDE 105          
BLAST of mRNA_H-paniculata_contig4636.11574.1 vs. uniprot
Match: A0A3D1P928_9CYAN (Spherulation-specific family 4 n=1 Tax=Cyanobacteria bacterium UBA11049 TaxID=2055787 RepID=A0A3D1P928_9CYAN)

HSP 1 Score: 63.9 bits (154), Expect = 4.730e-10
Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = 1
Query:   10 AGRDKAVSYSVVINPNSGPGY-EVNDLYQQGMYDLWDAGVEVLCYVATGFGNTAIDTVQRDIDKYEELYPDLCGGFFFDEGPGTDENTY 273
            A  +K V  +V+INPN+GPG    N  Y QG+ DL  AGV +L YV T +G+ +I  V+ DID Y   Y D+ G F  +   G ++  Y
Sbjct:   52 AAAEKQVPITVIINPNNGPGNGSPNQDYLQGIKDLRAAGVTILGYVFTKYGDRSITKVKADIDLYNSYY-DIDGIFLDEAASGINKLNY 139          
BLAST of mRNA_H-paniculata_contig4636.11574.1 vs. uniprot
Match: A0A2H9NRX6_9ARCH (Uncharacterized protein n=5 Tax=unclassified Aenigmarchaeota TaxID=1046937 RepID=A0A2H9NRX6_9ARCH)

HSP 1 Score: 62.4 bits (150), Expect = 2.700e-9
Identity = 36/89 (40.45%), Postives = 49/89 (55.06%), Query Frame = 1
Query:   10 AGRDKAVSYSVVINPNSGPGYEVNDLYQQGMYDLWDAGVEVLCYVATGFGNTAIDTVQRDIDKYEELYPDLCGGFFFDE-GPGTDENTY 273
            A  +  V    +INPNSGPG   N  Y  GM DL DAGV ++ YV T +G+  I+ V+ +ID Y + +     G FFDE    +D+  Y
Sbjct:   48 AQANSQVPIIAIINPNSGPGGPPNSDYIHGMQDLRDAGVTMIGYVHTSYGDRNINDVKDEIDIYNQYFN--IDGIFFDEVASSSDKIAY 134          
BLAST of mRNA_H-paniculata_contig4636.11574.1 vs. uniprot
Match: A0A8J6XQ47_9CYAN (Spherulation-specific family 4 protein n=1 Tax=Iningainema tapete BLCC-T55 TaxID=2748662 RepID=A0A8J6XQ47_9CYAN)

HSP 1 Score: 58.5 bits (140), Expect = 4.030e-8
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   40 VVINPNSGPGYEVNDLYQQGMYDLWDAGVEVLCYVATGFGNTAIDTVQRDIDKYEELYPDLCGGFFFDE-GPGTDENTY 273
            +V+NPNSGPG  +N  Y   + +   AG++V+ YV T +GN    TV+ +ID+Y+  Y     G F DE    ++E TY
Sbjct:   61 MVMNPNSGPGTAINSDYVNAVKNAQAAGIKVIGYVPTNYGNRNAITVKAEIDQYKTWY--AVDGIFLDEVATSSNELTY 137          
BLAST of mRNA_H-paniculata_contig4636.11574.1 vs. uniprot
Match: UPI000ADD4FCF (spherulation-specific family 4 protein n=1 Tax=Arthrobacter sp. B6 TaxID=1570137 RepID=UPI000ADD4FCF)

HSP 1 Score: 58.2 bits (139), Expect = 5.900e-8
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 1
Query:   40 VVINPNSGPGYEVNDLYQQGMYDLWDAGVEVLCYVATGFGNTAIDTVQRDIDKYEELYPDLCGGFFFDEGPGTDEN--TYK 276
            V++NPNSGPG  V++ + Q +  L DAGV VL YV TG+G+     V ++ID++ E Y       F DE     E   TY+
Sbjct:   75 VIVNPNSGPGAAVSERHIQLIGTLHDAGVRVLGYVKTGWGDRDQAAVTQEIDRWREWYG--VNNIFLDEAAAVPEEVGTYE 153          
BLAST of mRNA_H-paniculata_contig4636.11574.1 vs. uniprot
Match: A0A2P8WKV0_9CYAN (Spherulation-specific family 4 n=1 Tax=filamentous cyanobacterium CCP5 TaxID=2107701 RepID=A0A2P8WKV0_9CYAN)

HSP 1 Score: 56.6 bits (135), Expect = 2.210e-7
Identity = 33/74 (44.59%), Postives = 42/74 (56.76%), Query Frame = 1
Query:   28 VSYSVVINPNSGP-GYEVNDLYQQGMYDLWDAGVEVLCYVATGFGNTAIDTVQRDIDKYEELYPDLCGGFFFDE 246
            V  + +INPN+GP G   N  Y QGM  L  AGVE++ YV+T +G   I  V+ +ID Y   YP    G F DE
Sbjct:   58 VDITAIINPNNGPNGGAPNRDYVQGMQILKAAGVEMMGYVSTRYGERPIAEVKAEIDIYASFYP--VSGIFLDE 129          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4636.11574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FXS0_ECTSI3.640e-3358.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2B5_9PHAE6.580e-3157.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000738178D7.270e-1240.51spherulin-4 n=1 Tax=Diachasma alloeum TaxID=454923... [more]
UPI001C9D173F9.910e-1238.89spherulin-4-like n=1 Tax=Venturia canescens TaxID=... [more]
D8LCQ3_ECTSI1.930e-1145.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A3D1P928_9CYAN4.730e-1041.57Spherulation-specific family 4 n=1 Tax=Cyanobacter... [more]
A0A2H9NRX6_9ARCH2.700e-940.45Uncharacterized protein n=5 Tax=unclassified Aenig... [more]
A0A8J6XQ47_9CYAN4.030e-839.24Spherulation-specific family 4 protein n=1 Tax=Ini... [more]
UPI000ADD4FCF5.900e-840.74spherulation-specific family 4 protein n=1 Tax=Art... [more]
A0A2P8WKV0_9CYAN2.210e-744.59Spherulation-specific family 4 n=1 Tax=filamentous... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4636contigH-paniculata_contig4636:13608..14749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.9
Seed ortholog evalue4.5e-08
Seed eggNOG ortholog1321779.HMPREF1984_00671
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity
EggNOG OGsCOG1122@1,COG1122@2
COG Functional cat.P
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons2
Model size282
Cds size282
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930384.1078355-CDS-H-paniculata_contig4636:13607..137601622930384.1078355-CDS-H-paniculata_contig4636:13607..13760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4636 13608..13760 -
1691481267.2468958-CDS-H-paniculata_contig4636:13607..137601691481267.2468958-CDS-H-paniculata_contig4636:13607..13760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4636 13608..13760 -
1622930384.1280274-CDS-H-paniculata_contig4636:14620..147491622930384.1280274-CDS-H-paniculata_contig4636:14620..14749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4636 14621..14749 -
1691481267.2614443-CDS-H-paniculata_contig4636:14620..147491691481267.2614443-CDS-H-paniculata_contig4636:14620..14749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4636 14621..14749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4636.11574.1prot_H-paniculata_contig4636.11574.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4636 13608..14749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4636.11574.1

>prot_H-paniculata_contig4636.11574.1 ID=prot_H-paniculata_contig4636.11574.1|Name=mRNA_H-paniculata_contig4636.11574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
MVEAGRDKAVSYSVVINPNSGPGYEVNDLYQQGMYDLWDAGVEVLCYVAT
GFGNTAIDTVQRDIDKYEELYPDLCGGFFFDEGPGTDENTYKC*
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mRNA from alignment at H-paniculata_contig4636:13608..14749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4636.11574.1 ID=mRNA_H-paniculata_contig4636.11574.1|Name=mRNA_H-paniculata_contig4636.11574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1142bp|location=Sequence derived from alignment at H-paniculata_contig4636:13608..14749- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGAGGCTGGTAGGGACAAAGCCGTCTCCTATTCGGTGGTGATCAA CCCAAACAGCGGTCCGGGTTACGAGGTAAACGACCTCTACCAGCAAGGAA TGTATGATTTGTGGGACGCTGGCGTCGAGGTGAGGAATGTTATGACCATG CCCTATTGAAACCATGACACGTAGTTCATCCCCGGGACAATCACGAACAC AAGGCATGAATATATACGAGAAGTCTGGAATGAATACCGTATCTAATTAG GTTACGGAAGATGCCAATGTGACGTGAATAATATGCAGTGTAATCGATCT ATATGGGCAGATACAGTATTAAATGTGTGCATCATCATCCGGAGAGTAGA CAGGACCTGCATGTATGATTGTTCGCCGGGTATACGGCCACCTGGTGATG ATCTGTAGAGGGACCAGTCATGGACACGTAGGGAAGAAATACGTTTTTAC CCATGACAAATAATTATACTTGAGAGTTGGATATGATCACTCGATGCTTG AACTGAGCAATACTTGTTAGTTCAAGGAGAGGAGCGCTCATTCCATTTCC CCCCGGTAGACTCGACTTCCTTCTATCACGGTCGCCAGTTTCTCCTTGCG ATGGCGATCGACCTATATTCTCTCGATCTGTGCTGTTCGCCAAAGGGAGC TAGTCGATTCTGCCCAGCAACTAGTCATTATCTCCGTTTCATTTTGTTTT TTTATTTATCATTCATTTTTTTTTCTACAGGCGCAATTTATCCGTTCCGT ATGATTTTAATGTCTCTTGTGTCGCACTGGGTGGTTACTGGCTATTTCTG CAGGACTTGACGTTGCTTCGCGAGAGTTTTGAGTATCTCCTCGTTCAATT CACCCATCATCTTATCTTGCAGACAGTCATGACCAGAGACTGATACACTA CATGGACTGGAATTAGTTCATGATCACAGAAAGTACTTGAATAGAAAGCG ATTTGTTGACGTCCGCGCGCTTGCCCGCTTGTTTGTCAGGTGCTCTGCTA CGTAGCCACTGGGTTTGGAAACACGGCCATCGACACGGTTCAGCGAGATA TCGACAAATATGAGGAACTCTACCCAGATTTGTGCGGAGGATTTTTTTTC GATGAAGGACCCGGCACGGACGAAAATACCTATAAATGTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4636:13608..14749-

>mRNA_H-paniculata_contig4636.11574.1 ID=mRNA_H-paniculata_contig4636.11574.1|Name=mRNA_H-paniculata_contig4636.11574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig4636:13608..14749- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGAGGCTGGTAGGGACAAAGCCGTCTCCTATTCGGTGGTGATCAA
CCCAAACAGCGGTCCGGGTTACGAGGTAAACGACCTCTACCAGCAAGGAA
TGTATGATTTGTGGGACGCTGGCGTCGAGATGGTGGAGGCTGGTAGGGAC
AAAGCCGTCTCCTATTCGGTGGTGATCAACCCAAACAGCGGTCCGGGTTA
CGAGGTAAACGACCTCTACCAGCAAGGAATGTATGATTTGTGGGACGCTG
GCGTCGAGGTGCTCTGCTACGTAGCCACTGGGTTTGGAAACACGGCCATC
GACACGGTTCAGCGAGATATCGACAAATATGAGGAACTCTACCCAGATTT
GTGCGGAGGATTTTTTTTCGATGAAGGACCCGGCACGGACGAAAATACCT
ATAAATGTTAGGTGCTCTGCTACGTAGCCACTGGGTTTGGAAACACGGCC
ATCGACACGGTTCAGCGAGATATCGACAAATATGAGGAACTCTACCCAGA
TTTGTGCGGAGGATTTTTTTTCGATGAAGGACCCGGCACGGACGAAAATA
CCTATAAATGTTAG
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