mRNA_H-paniculata_contig4636.11573.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4636.11573.1
Unique NamemRNA_H-paniculata_contig4636.11573.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4636.11573.1 vs. uniprot
Match: A0A6H5L2B5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B5_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.400e-26
Identity = 64/114 (56.14%), Postives = 73/114 (64.04%), Query Frame = 1 
Query:   13 TVSKLYCANWGYVFFTDDSLGSDGNPWDQTPGYFESLLDAVASASGSADLCGTPVPSVAPTPVPVLKP---GETRAPV------RTPEPTQRTTSQPAAIGESIAPVFTGITPA 327
            TV +LYCANWGYVFFTDDS G D NPWD+ PGYF  LL++VA A   A+ CGT  P+ APTP+P L P   GETRAPV           T+  T QPAAIG + AP     TPA
Sbjct:  286 TVLQLYCANWGYVFFTDDSFGDDENPWDEMPGYFMELLESVAKAEEGAEGCGTWAPTAAPTPIPTLAPLAPGETRAPVPXXXXXXXXXXTEYFTLQPAAIGGTRAPTMLLPTPA 399
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4636.11573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2B5_9PHAE1.400e-2656.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4636contigH-paniculata_contig4636:5936..9385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size398
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930384.0294356-CDS-H-paniculata_contig4636:5935..61211622930384.0294356-CDS-H-paniculata_contig4636:5935..6121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4636 5936..6121 -
1691481267.227346-CDS-H-paniculata_contig4636:5935..61211691481267.227346-CDS-H-paniculata_contig4636:5935..6121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4636 5936..6121 -
1622930384.0509422-CDS-H-paniculata_contig4636:9175..93851622930384.0509422-CDS-H-paniculata_contig4636:9175..9385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4636 9176..9385 -
1691481267.236903-CDS-H-paniculata_contig4636:9175..93851691481267.236903-CDS-H-paniculata_contig4636:9175..9385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4636 9176..9385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4636.11573.1prot_H-paniculata_contig4636.11573.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4636 5936..9385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4636.11573.1

>prot_H-paniculata_contig4636.11573.1 ID=prot_H-paniculata_contig4636.11573.1|Name=mRNA_H-paniculata_contig4636.11573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
LLAETVSKLYCANWGYVFFTDDSLGSDGNPWDQTPGYFESLLDAVASASG
SADLCGTPVPSVAPTPVPVLKPGETRAPVRTPEPTQRTTSQPAAIGESIA
PVFTGITPAPTSGLSSSPAPTTAYTAPPAGTP
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mRNA from alignment at H-paniculata_contig4636:5936..9385-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4636.11573.1 ID=mRNA_H-paniculata_contig4636.11573.1|Name=mRNA_H-paniculata_contig4636.11573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3450bp|location=Sequence derived from alignment at H-paniculata_contig4636:5936..9385- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCTCGCCGAAACGGTAAGTAAGCTATACTGCGCTAACTGGGGGTACGT
CTTCTTCACGGACGATTCTCTCGGGTCCGATGGCAACCCGTGGGACCAGA
CGCCGGGGTACTTCGAGTCGCTGCTTGATGCCGTAGCTTCGGCTTCGGGG
TCCGCTGATCTATGCGGGACGCCGGTTCCCTCCGTGGCTCCAACGCCTGT
TCCTGTATTGGTGAGTTCGGTGGTTGCTTTGTGTTAAATATAGTCATGGA
TAGATCGGTGTACTCTGCATTATGTTCTTGGGCAGTGTATGAGTCATCGT
ATGTATCCCGCGTGGCGTTGTGAAAGCGTACAGACGGACCCACACACTCT
TCTCTCATATACCCACTACTGCCAACCGACATGCTATGCGCCCCGTACGT
ACCGGACGTTTGCCCCCCCCCCCCCTCCCCCCCCCCGCGCGCGCGCCCTC
TATGATGTTGTGACAAAGTGAGATCTTCAGATTTGTTCGTAGTTGAAGAT
TTCAGCACCTGAATGCGCCCAACAAATGATCGATTGCCATGATGAGGGTT
GGTCATCTATGCCCCCATTTTAATGGTCATGGTTGCGCTCCAGCATGCAA
TTTCCTAAAAACAAATTCTGTTCTTGTTGGGGTAGTATTTAGTTGAAAGC
CCTCTACCCGCCGCCACCCCTCTACCCTTCCAAAGGGGAATAAGATGAGC
AGGAAATTTGATTTGAAACATATTTCCGATTCCTCTTGACAGGGGTATAT
CGAGTCATGATCCAATTTTTCACTCCCCCGATGAATGCGAACACGTCGAA
CAGTCACGGCGAAACTCAGATCCTAGAGAGCAGATTCGTGAGGAGTAAGC
CCCCTGAGCGTCAAGTATCGTTTGTCTAGCCGGCAGTAATACTAGACCAA
TCTAATTCGTCTTATTTCTACGGGTTCTCGCCTACATATCTATGCACGTG
ATGAATATCATCACCATTGTCTCTGCCGGTAAATAAGTACAACCCGCGAG
TCTGTCCAGTGGTGTATACCAATTGGGCTTAAAACACGATGGTTGAGGTA
CACTAATTCAGTATACTGGTGTACTCGACTTTTTTCTTATTAGAGCGTCG
TGGTTTCGGTGGAATTGTGCCGCGAAATAATTCTTGGTCAAATCGGCGCC
AACATACACTGTACCCCGGGAGGACGGATTAGGGTTGGGGTTACCGTTAG
TTCCACCGTTTGTCCTGCTCGCGTGGGGGCACCATGGAAGTATCATGAAC
CACTGTGTTCGACGAAGTGGTGATGAACGGGGGTCAGATTGTCTGTTGGG
CCTAGATTGAACGGGAGCCAAGGAGCGAAAAGTAAAAGTTGATCCCTAGT
GACTCTTACATAGCGCAACTATCTCGAAGCATCATCATTTGTTTTGAGTA
AACAGATGGTCACCAAGTGGTCGTATACCCGGTGAACAGTCTCACATGTA
GGTCATGTTTATTTTCTGGGTGGTACTGTAAAGACTATATACTCTATTTG
CCCGAGGTTTTCGAGTAGATTGCATCTTTTTCGAGTCACATGGGCATGTC
TTACCCCCCGCAATTCAAATGGATACAGTATTTATTCCAGATTTCTCATA
TTAAGTCCTGGATTGTATTCGTATTTGTCCAGGAGGGTGGAGAATTTTCG
CGTTTTTAGAAGGTATATTTGCTCATTTTTTTGAAGCCGCATGCGAAAAG
CGTTGTCGATTTTCTCGTCGGTAAAATTTACTTGATGGAATGTTTATCGA
CGTGTGTAGCCCGAGAGACGCTGCTATCTATACTACAGACCTTGAGAGCT
ATTCATTTCCTTACCTCAGTGAAGGGCGTCTGTTTGTCTCGCTCCTCGGT
TGCTCCAGGCGGGTTTACTTTTCGAGAACGCCATCTTGCCGAAAACAAAT
CGGACGGAGGGAGAAAAGAAATGTTTTTCGCACGAATTTTCGAGACGTTG
AGCAAATATTTTCGATCCATATCATTTCGGGTTTTTAAACACCATGGTAG
AAATCACTTGAGTTTGAACATACGACAAAAATCGGGTTTGTGATTCCCGA
AAGATTCGACCTCACTGGTGGGTGAATTTCGACTCTTGACAACACGTTCT
TCCCCCCCTACTCGTCATTATCCAATTTCGCTAGTGCGTATGTACAACTG
AAGTTTGAGGTCAGTGTCATAACCTCATCATGGGTACGTTGCCCCCTCTT
GATTAGCCCTCAGCAATGTACATAAATGTGGGGACAGAAGCTGGTGCTAC
TAAAGCCCTGTAAGAATGTGAGGGGTGATATCATGCAGCCGTCATGTATT
TAGAGGCCATGATGCAGATTAACTATTCGTACATGGGCATGCTTGTCGTT
GATGCAAGATATACGGTTGTGATCCCCGGTATGGTGCAGTGCTCGATGGT
GCTGTTCGTTTTTGCAGCAGCCCCTTGATACTTATAGCTGTAGTGGTAAG
TCTACGTACACAGCTGTGTGTCAGTTGGTCTGCCTAGCCTGAGTCGAAGA
TTCCGACTGTTTCAGGTTTCACTTGCTAATAAAGTTGTCGTAACGCGTTA
CTGAGATCGTGATACCTTTGACTGTAGTTTAGGTCTTGAACCACGACGAA
TCAAAGTGTGCTGTTGAGCGGATACGCAGAACTACTGGCTCGTGTTAGTC
CGAGGGAAAATCATGCAAAAATGTGAAATAGGGGGTCGACCTTAACAAGA
ATCGTGCTTTCCATAAATATATATATATATACCACTATCATCACTCTCGA
TACGCATGATCTACAGCGCTGACGGTAGATGGTCACAAAGGGTGTTAGCC
TGTGTGGTGGTGTAGCCTTTACATGGCTGTAACGCAAGATACTCACGGTT
ATTGCTCCCGAAGAAGAGGTTGGAAAATTACTAAGATTTGTGCACGTTTT
TTACGTTTTTTGCGCATATCTCACGGTATGTTACATGACCCGTTTGTGCG
CAGAGAGTAATGAGTTTTTCCCGCATTTCTTCGAAGACGCAGGTACATAA
CGTATCTTTCATCGAGTATCACTACTTGCCTGCTTCGCAACTTTTTCAAG
CTCATCGACGTCGCTCTACTTCATCTTTTGGGTAGAGTATTGATGAAAAA
TCAGTGGGGTTAAGACAGCTTCAACCTAACAATTGGCTGACTTGAAGGTT
CCCCCCGCCCCCCTTCCTTCATCCCCCTCACATGAAAACACTGACATGTA
TACTATTCTCATGCCTTCTCCATCCCACCCTATCCCCTTGCCGCCTTCCT
CTATCGTCTTGTAGAAACCCGGAGAGACGCGGGCGCCTGTCCGCACGCCG
GAGCCTACACAGCGCACCACAAGCCAACCCGCTGCAATCGGGGAGAGCAT
CGCACCAGTTTTTACCGGGATCACACCTGCACCCACCAGTGGCCTATCAT
CTTCACCTGCGCCAACGACCGCGTATACTGCGCCGCCAGCAGGTACCCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig4636:5936..9385-

>mRNA_H-paniculata_contig4636.11573.1 ID=mRNA_H-paniculata_contig4636.11573.1|Name=mRNA_H-paniculata_contig4636.11573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig4636:5936..9385- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCTCGCCGAAACGGTAAGTAAGCTATACTGCGCTAACTGGGGGTACGT
CTTCTTCACGGACGATTCTCTCGGGTCCGATGGCAACCCGTGGGACCAGA
CGCCGGGGTACTTCGAGTCGCTGCTTGATGCCGTAGCTTCGGCTTCGGGG
TCCGCTGATCTATGCGGGACGCCGGTTCCCTCCGTGGCTCCAACGCCTGT
TCCTGTATTGCTTCTCGCCGAAACGGTAAGTAAGCTATACTGCGCTAACT
GGGGGTACGTCTTCTTCACGGACGATTCTCTCGGGTCCGATGGCAACCCG
TGGGACCAGACGCCGGGGTACTTCGAGTCGCTGCTTGATGCCGTAGCTTC
GGCTTCGGGGTCCGCTGATCTATGCGGGACGCCGGTTCCCTCCGTGGCTC
CAACGCCTGTTCCTGTATTGAAACCCGGAGAGACGCGGGCGCCTGTCCGC
ACGCCGGAGCCTACACAGCGCACCACAAGCCAACCCGCTGCAATCGGGGA
GAGCATCGCACCAGTTTTTACCGGGATCACACCTGCACCCACCAGTGGCC
TATCATCTTCACCTGCGCCAACGACCGCGTATACTGCGCCGCCAGCAGGT
ACCCCTAAACCCGGAGAGACGCGGGCGCCTGTCCGCACGCCGGAGCCTAC
ACAGCGCACCACAAGCCAACCCGCTGCAATCGGGGAGAGCATCGCACCAG
TTTTTACCGGGATCACACCTGCACCCACCAGTGGCCTATCATCTTCACCT
GCGCCAACGACCGCGTATACTGCGCCGCCAGCAGGTACCCCT
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