mRNA_H-paniculata_contig4636.11572.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4636.11572.1
Unique NamemRNA_H-paniculata_contig4636.11572.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4636.11572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4636contigH-paniculata_contig4636:4129..5692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size340
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4636.11572.1prot_H-paniculata_contig4636.11572.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4636 4235..5677 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930383.8865082-UTR-H-paniculata_contig4636:4128..42341622930383.8865082-UTR-H-paniculata_contig4636:4128..4234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4636 4129..4234 -
1691481267.177777-UTR-H-paniculata_contig4636:4128..42341691481267.177777-UTR-H-paniculata_contig4636:4128..4234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4636 4129..4234 -
1622930383.9708998-UTR-H-paniculata_contig4636:5677..56921622930383.9708998-UTR-H-paniculata_contig4636:5677..5692Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4636 5678..5692 -
1691481267.2181811-UTR-H-paniculata_contig4636:5677..56921691481267.2181811-UTR-H-paniculata_contig4636:5677..5692Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4636 5678..5692 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930383.9168565-CDS-H-paniculata_contig4636:4234..43201622930383.9168565-CDS-H-paniculata_contig4636:4234..4320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4636 4235..4320 -
1691481267.1955745-CDS-H-paniculata_contig4636:4234..43201691481267.1955745-CDS-H-paniculata_contig4636:4234..4320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4636 4235..4320 -
1622930383.9527822-CDS-H-paniculata_contig4636:5544..56771622930383.9527822-CDS-H-paniculata_contig4636:5544..5677Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4636 5545..5677 -
1691481267.20725-CDS-H-paniculata_contig4636:5544..56771691481267.20725-CDS-H-paniculata_contig4636:5544..5677Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4636 5545..5677 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4636.11572.1

>prot_H-paniculata_contig4636.11572.1 ID=prot_H-paniculata_contig4636.11572.1|Name=mRNA_H-paniculata_contig4636.11572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MPMVLETPAPTANTTATPAPTANATATPAPVQERSGETSGADGIVTGQPP
AGLILMTSAAFLLLPLLLERQA*
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mRNA from alignment at H-paniculata_contig4636:4129..5692-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4636.11572.1 ID=mRNA_H-paniculata_contig4636.11572.1|Name=mRNA_H-paniculata_contig4636.11572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1564bp|location=Sequence derived from alignment at H-paniculata_contig4636:4129..5692- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTAGCCCGACGGTTATGCCTATGGTCTTGGAAACCCCCGCGCCTACAGC
TAACACTACAGCGACCCCCGCGCCTACAGCTAACGCTACAGCGACCCCCG
CGCCGGTTCAAGAGAGGAGTGGAGAAACGTCGGGAGCTGATGGGATAGGT
GGGGGTATGGGTGGTTGTCGTGCCGGTTTATGGGTGCATGGGTGGTGAAT
GATCCATTTAATAAGGAAATGCAGACACTCAGAAATCTTCCGAAGAGTGG
AAGGAGCGGAAAGGGTTTTTTGCCTGACCTTCCGGGGGTTGAAGAAAAAA
AAAATGGGTGGTGAACCGACCATACTAGAGTGGTAGTCGAGTACGACTGC
ATAGATACAAGTGCAGTGCGAACTAGTGTCTTGTCTTCCAAATGAATTGG
AGCTTTTACAGGAGATTCAACCTGAAAACAGTGCTTTCCTTAACCGAAGT
TTATAGCCAGTAACGTTTAATTCGGAACAACCAATGGATGCGTGCTCGAT
CGCGTTGTAACTATGTTGGGTTTTTTACTACTTCGGCGTCCCCACAGTGT
TGTGCGAAAGGACTCTTCAGGGCTTCAAATGTCGCTTCCCCCCCCCTCCA
AAATTGTGGCAAAAAGAGTACTTTCGCACCACGGTGAGGGGGCACGAATG
CTGGGGAAAGCCTTGAGACAGTTACAGCGCGATCGATGGCCGTTGGGTCC
ACCAAACAGAGGTCATTTGTCGTGACTTTGGGTTAGGGAATCACTATTCT
GGGGTTAATCCTCGTTTTTTAAGACACTCTTCGAGGGTCGTCTATTTGGT
CTGGTTGTCTAGACCGCCCTGATGAGTAGGTGTATGGCCATGGTTGTGAG
GGGTAAACGAACGGCTCTAGCCCCAGTATCCAGGGGGATAGTGTTTTTTG
GGAAATGTGATACATGATTCTGGCTTTTATTATTGGTCTGTGTGACCATG
AGGCATTTAATTTACTGTGTTCAATTGCTTGTTGTTATACTAGGTTTATG
TAGGTTTTCATACATGGGTTAATATCGGCTTCCTCTTATTGATCCTGTGT
TGACAAGTATATATACAATTGAAGATTCAAGTCAGCTGCATAACCTTAAC
ATGGGTACGATGGAGTTATCCCATATGAGCACGTCTCTTATTCGTCGTTA
TTTTAATTGTGCTCACAAGTGCGTACAAGTGCAGATTGAAGTCAGCTGCT
CAATCGCAATGTGGGTACGATGGAGTTGTTCAATGTACCACCCTCTCATC
CTCTTTACATCCGTAGCTTGATCGAAAAGCGAGTAATCTACTAAGGAATG
TGGAAGATACTGAGAATATCCCCCCCGCACCTTGGATCTCTCACTCTCCA
CCTCTGGTGGCCCCGGACACAGTTACGGGACAACCGCCGGCGGGCCTTAT
CCTGATGACGTCAGCTGCATTCCTGCTTTTGCCTCTTCTGCTGGAGAGAC
AAGCTTGAAGAGAGGCACTAGGCTGAAAGTCCGCCACGAGAGAATGGCGC
TGCTCGGTGGATTGGCCTGTCGAGGGAGTGGTCGTTCGGTTGGTCTCTCT
CTCTCTGTTCGTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig4636:4129..5692-

>mRNA_H-paniculata_contig4636.11572.1 ID=mRNA_H-paniculata_contig4636.11572.1|Name=mRNA_H-paniculata_contig4636.11572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig4636:4129..5692- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTATGGTCTTGGAAACCCCCGCGCCTACAGCTAACACTACAGCGAC
CCCCGCGCCTACAGCTAACGCTACAGCGACCCCCGCGCCGGTTCAAGAGA
GGAGTGGAGAAACGTCGGGAGCTGATGGGATAGATGCCTATGGTCTTGGA
AACCCCCGCGCCTACAGCTAACACTACAGCGACCCCCGCGCCTACAGCTA
ACGCTACAGCGACCCCCGCGCCGGTTCAAGAGAGGAGTGGAGAAACGTCG
GGAGCTGATGGGATAGTTACGGGACAACCGCCGGCGGGCCTTATCCTGAT
GACGTCAGCTGCATTCCTGCTTTTGCCTCTTCTGCTGGAGAGACAAGCTT
GATTACGGGACAACCGCCGGCGGGCCTTATCCTGATGACGTCAGCTGCAT
TCCTGCTTTTGCCTCTTCTGCTGGAGAGACAAGCTTGA
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