prot_H-paniculata_contig46297.11565.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig46297.11565.1
Unique Nameprot_H-paniculata_contig46297.11565.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length55
Homology
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BLAST of mRNA_H-paniculata_contig46297.11565.1 vs. uniprot
Match: A0A6H5L2U2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2U2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 6.130e-13
Identity = 36/47 (76.60%), Postives = 43/47 (91.49%), Query Frame = 0 
Query:    2 SQEAAERTLWNLARKRAEGSEKSLQIQLACEGLRAEVKRLKTAAAMS 48
            SQEAAE+TLWNLARKR+EG +K++QIQLACEGLRAEVKRLK   A++
Sbjct:  175 SQEAAEKTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLKALEAVA 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46297.11565.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2U2_9PHAE6.130e-1376.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008409Pre-mRNA-splicing factor SPF27PFAMPF05700BCAS2coord: 2..46
e-value: 6.1E-5
score: 22.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46297contigH-paniculata_contig46297:151..315 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46297.11565.1mRNA_H-paniculata_contig46297.11565.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig46297 151..342 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig46297.11565.1 ID=prot_H-paniculata_contig46297.11565.1|Name=mRNA_H-paniculata_contig46297.11565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MSQEAAERTLWNLARKRAEGSEKSLQIQLACEGLRAEVKRLKTAAAMSAA
NVKP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008409SPF27