mRNA_H-paniculata_contig46292.11564.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46292.11564.1
Unique NamemRNA_H-paniculata_contig46292.11564.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig46292.11564.1 vs. uniprot
Match: A0A8J6D396_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D396_9ROSI)

HSP 1 Score: 58.9 bits (141), Expect = 7.980e-7
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:   22 WNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGWGRLVILVSQAGRQSQVAMLNRVAHVPELGCNLISTRRAT 267
            W  D+GA+DHMT + T F  YTP    +   IA+G++ PV G G + I        ++   L++V HVP L CNL+S  + T
Sbjct:  293 WILDSGASDHMTGNSTLFHTYTPCHDKSRIRIADGSYSPVAGVGEVQI--------TENFFLDKVLHVPNLSCNLLSISKLT 366
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BLAST of mRNA_H-paniculata_contig46292.11564.1 vs. uniprot
Match: A0A165M5Y1_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165M5Y1_9AGAM)

HSP 1 Score: 55.5 bits (132), Expect = 1.780e-6
Identity = 31/87 (35.63%), Postives = 46/87 (52.87%), Query Frame = 1 
Query:   19 HWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGWGRLVILVSQAGRQSQVAMLNRVAHVPELGCNLISTRRATGTSG 279
            +WN+DTGAT HMT     F  Y+P +      + N T +   G G ++  +     ++ V +L+ V HVP+LG NL+S    T T G
Sbjct:   62 NWNTDTGATSHMTPHRHWFASYSPHI--IPVRLTNDTIIYTAGMGSVMFELVLGESKAPVVVLHNVLHVPQLGSNLLSVYHLTKTKG 146
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BLAST of mRNA_H-paniculata_contig46292.11564.1 vs. uniprot
Match: A0A6P4Q4E7_GOSAR (probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4Q4E7_GOSAR)

HSP 1 Score: 57.4 bits (137), Expect = 2.700e-6
Identity = 32/82 (39.02%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:   22 WNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGWGRLVILVSQAGRQSQVAMLNRVAHVPELGCNLISTRRAT 267
            W  D+GA+DHMT + T F  YTP        IA+G++ PV G G + I        ++   L++V HVP L CNL+S  + T
Sbjct:  184 WILDSGASDHMTGNSTLFHTYTPCHDKFRIRIADGSYSPVAGVGEVQI--------TENFSLDKVLHVPNLSCNLLSISKLT 257
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BLAST of mRNA_H-paniculata_contig46292.11564.1 vs. uniprot
Match: A0A165MYY0_9AGAM (Uncharacterized protein (Fragment) n=10 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165MYY0_9AGAM)

HSP 1 Score: 54.3 bits (129), Expect = 8.910e-6
Identity = 32/87 (36.78%), Postives = 46/87 (52.87%), Query Frame = 1 
Query:   19 HWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGWGRLVILVSQAGRQSQVAMLNRVAHVPELGCNLISTRRATGTSG 279
            +WN+DTGAT HMT     F  Y+P +      +AN T +   G G ++        ++ V +L+ V HVP+LG NL+S    T T G
Sbjct:   99 NWNTDTGATSHMTPHRHWFASYSPHI--IPVRLANDTSIYTAGMGSVMFEPVLGESKAPVVVLHDVLHVPQLGSNLLSVYHLTKTKG 183
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BLAST of mRNA_H-paniculata_contig46292.11564.1 vs. uniprot
Match: A0A6P4MA83_GOSAR (uncharacterized protein LOC108458679 n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4MA83_GOSAR)

HSP 1 Score: 55.5 bits (132), Expect = 9.710e-6
Identity = 30/82 (36.59%), Postives = 44/82 (53.66%), Query Frame = 1 
Query:   22 WNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGWGRLVILVSQAGRQSQVAMLNRVAHVPELGCNLISTRRAT 267
            W  D+GA DHM  + T F+ YTP    +   IA+G++ PV G G++ +    +        L+ V HVP L CNL+S  + T
Sbjct:  203 WILDSGAFDHMIGNSTLFQTYTPCHNQSRIHIADGSYSPVAGVGKIQLTKKNS--------LDEVLHVPNLSCNLLSISKLT 276
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BLAST of mRNA_H-paniculata_contig46292.11564.1 vs. uniprot
Match: A0A8J5XZJ0_9ROSI (Retrotran_gag_3 domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5XZJ0_9ROSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.610e-5
Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:   22 WNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGWGRLVILVSQAGRQSQVAMLNRVAHVPELGCNLISTRRAT 267
            W  D+GA+DHMT + + F  Y P    +   IA+G++ PV G G +        R ++   L++V HVP L CNL+S  + T
Sbjct:  341 WILDSGASDHMTGNLSLFHTYLPCHDHSRIRIADGSYSPVAGMGTV--------RLTENFSLDKVLHVPNLSCNLLSISKLT 414
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BLAST of mRNA_H-paniculata_contig46292.11564.1 vs. uniprot
Match: A0A1U8IHS4_GOSHI (DNA polymerase kappa n=1 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8IHS4_GOSHI)

HSP 1 Score: 54.3 bits (129), Expect = 3.260e-5
Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:   22 WNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGWGRLVILVSQAGRQSQVAMLNRVAHVPELGCNLISTRRAT 267
            W  D+GA+DHMT + + F  Y P    +   IA+G++ PV G G +        R ++   L++V HVP L CNL+S  + T
Sbjct: 1193 WILDSGASDHMTGNLSLFHTYLPCHDHSRIRIADGSYSPVAGMGTV--------RLTENFSLDKVLHVPNLSCNLLSISKLT 1266
[Close]
BLAST of mRNA_H-paniculata_contig46292.11564.1 vs. uniprot
Match: A0A165M6L6_9AGAM (gag_pre-integrs domain-containing protein n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165M6L6_9AGAM)

HSP 1 Score: 52.0 bits (123), Expect = 8.760e-5
Identity = 28/76 (36.84%), Postives = 42/76 (55.26%), Query Frame = 1 
Query:   19 HWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGWGRLVILVSQAGRQSQVAMLNRVAHVPELGCNL 246
            +WN++TGAT HMT     F  Y+P +      +AN T +   G G ++      G ++ V +L+ V HVP+LG NL
Sbjct:   45 NWNTNTGATSHMTPHRHWFASYSPHI--IPVRLANDTIIYTAGMGSVIFEPVLGGSKAPVVVLHDVLHVPQLGSNL 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46292.11564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A8J6D396_9ROSI7.980e-739.02Integrase catalytic domain-containing protein n=1 ... [more]
A0A165M5Y1_9AGAM1.780e-635.63Uncharacterized protein (Fragment) n=1 Tax=Neolent... [more]
A0A6P4Q4E7_GOSAR2.700e-639.02probable LRR receptor-like serine/threonine-protei... [more]
A0A165MYY0_9AGAM8.910e-636.78Uncharacterized protein (Fragment) n=10 Tax=Neolen... [more]
A0A6P4MA83_GOSAR9.710e-636.59uncharacterized protein LOC108458679 n=1 Tax=Gossy... [more]
A0A8J5XZJ0_9ROSI2.610e-536.59Retrotran_gag_3 domain-containing protein n=1 Tax=... [more]
A0A1U8IHS4_GOSHI3.260e-536.59DNA polymerase kappa n=1 Tax=Gossypium hirsutum Ta... [more]
A0A165M6L6_9AGAM8.760e-536.84gag_pre-integrs domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46292contigH-paniculata_contig46292:223..789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.0
Seed ortholog evalue3.4e-07
Seed eggNOG ortholog3827.XP_004514121.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3G9AM@35493,4JTRP@91835,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size567
Cds size567
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930382.8616755-CDS-H-paniculata_contig46292:222..7891622930382.8616755-CDS-H-paniculata_contig46292:222..789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46292 223..789 -
1691481266.7177887-CDS-H-paniculata_contig46292:222..7891691481266.7177887-CDS-H-paniculata_contig46292:222..789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46292 223..789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46292.11564.1prot_H-paniculata_contig46292.11564.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46292 223..789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46292.11564.1

>prot_H-paniculata_contig46292.11564.1 ID=prot_H-paniculata_contig46292.11564.1|Name=mRNA_H-paniculata_contig46292.11564.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=189bp
MTREKEHWNSDTGATDHMTSDETAFEDYTPALPGTMCEIANGTFVPVEGW
GRLVILVSQAGRQSQVAMLNRVAHVPELGCNLISTRRATGTSGNSFIYSA
NKASLGLGEEESLIFNLSASSGLYEVEAVRSAAGTAKALTARRSSIRGVM
DMHHLLAHASEQVTRDTAETASVALTGEWGTCKGCSTAK
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mRNA from alignment at H-paniculata_contig46292:223..789-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46292.11564.1 ID=mRNA_H-paniculata_contig46292.11564.1|Name=mRNA_H-paniculata_contig46292.11564.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=567bp|location=Sequence derived from alignment at H-paniculata_contig46292:223..789- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCAGAGAAAAGGAACACTGGAACTCAGACACCGGCGCGACAGACCA
CATGACGTCGGATGAGACTGCGTTCGAGGACTACACTCCAGCGCTTCCGG
GGACCATGTGTGAAATCGCCAACGGGACATTCGTGCCGGTAGAGGGGTGG
GGACGCCTTGTGATTCTAGTAAGTCAAGCGGGGAGACAATCACAGGTAGC
AATGTTAAACAGGGTTGCCCACGTACCCGAGCTCGGATGCAATTTAATCT
CCACACGTCGAGCAACAGGTACATCCGGCAACTCGTTCATATACAGTGCC
AACAAAGCAAGCCTTGGGCTAGGGGAGGAGGAGAGCCTTATTTTCAACTT
GTCAGCATCTTCAGGACTGTATGAGGTGGAGGCCGTTCGGAGTGCTGCGG
GAACAGCAAAAGCTCTGACGGCGAGAAGATCCTCGATTCGCGGCGTCATG
GACATGCACCACCTGCTTGCGCATGCGAGCGAGCAGGTCACAAGGGATAC
GGCGGAAACGGCCAGCGTCGCGCTGACGGGTGAGTGGGGGACCTGCAAAG
GATGCTCCACTGCAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig46292:223..789-

>mRNA_H-paniculata_contig46292.11564.1 ID=mRNA_H-paniculata_contig46292.11564.1|Name=mRNA_H-paniculata_contig46292.11564.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1134bp|location=Sequence derived from alignment at H-paniculata_contig46292:223..789- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCAGAGAAAAGGAACACTGGAACTCAGACACCGGCGCGACAGACCA
CATGACGTCGGATGAGACTGCGTTCGAGGACTACACTCCAGCGCTTCCGG
GGACCATGTGTGAAATCGCCAACGGGACATTCGTGCCGGTAGAGGGGTGG
GGACGCCTTGTGATTCTAGTAAGTCAAGCGGGGAGACAATCACAGGTAGC
AATGTTAAACAGGGTTGCCCACGTACCCGAGCTCGGATGCAATTTAATCT
CCACACGTCGAGCAACAGGTACATCCGGCAACTCGTTCATATACAGTGCC
AACAAAGCAAGCCTTGGGCTAGGGGAGGAGGAGAGCCTTATTTTCAACTT
GTCAGCATCTTCAGGACTGTATGAGGTGGAGGCCGTTCGGAGTGCTGCGG
GAACAGCAAAAGCTCTGACGGCGAGAAGATCCTCGATTCGCGGCGTCATG
GACATGCACCACCTGCTTGCGCATGCGAGCGAGCAGGTCACAAGGGATAC
GGCGGAAACGGCCAGCGTCGCGCTGACGGGTGAGTGGGGGACCTGCAAAG
GATGCTCCACTGCAAAGATGACCAGAGAAAAGGAACACTGGAACTCAGAC
ACCGGCGCGACAGACCACATGACGTCGGATGAGACTGCGTTCGAGGACTA
CACTCCAGCGCTTCCGGGGACCATGTGTGAAATCGCCAACGGGACATTCG
TGCCGGTAGAGGGGTGGGGACGCCTTGTGATTCTAGTAAGTCAAGCGGGG
AGACAATCACAGGTAGCAATGTTAAACAGGGTTGCCCACGTACCCGAGCT
CGGATGCAATTTAATCTCCACACGTCGAGCAACAGGTACATCCGGCAACT
CGTTCATATACAGTGCCAACAAAGCAAGCCTTGGGCTAGGGGAGGAGGAG
AGCCTTATTTTCAACTTGTCAGCATCTTCAGGACTGTATGAGGTGGAGGC
CGTTCGGAGTGCTGCGGGAACAGCAAAAGCTCTGACGGCGAGAAGATCCT
CGATTCGCGGCGTCATGGACATGCACCACCTGCTTGCGCATGCGAGCGAG
CAGGTCACAAGGGATACGGCGGAAACGGCCAGCGTCGCGCTGACGGGTGA
GTGGGGGACCTGCAAAGGATGCTCCACTGCAAAG
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