mRNA_H-paniculata_contig46287.11561.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46287.11561.1
Unique NamemRNA_H-paniculata_contig46287.11561.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46287.11561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46287contigH-paniculata_contig46287:37..1034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size294
Cds size294
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46287.11561.1prot_H-paniculata_contig46287.11561.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46287 37..1034 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930382.4951358-CDS-H-paniculata_contig46287:36..1401622930382.4951358-CDS-H-paniculata_contig46287:36..140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46287 37..140 -
1691481266.5410159-CDS-H-paniculata_contig46287:36..1401691481266.5410159-CDS-H-paniculata_contig46287:36..140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46287 37..140 -
1622930382.5132356-CDS-H-paniculata_contig46287:644..7711622930382.5132356-CDS-H-paniculata_contig46287:644..771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46287 645..771 -
1691481266.5526686-CDS-H-paniculata_contig46287:644..7711691481266.5526686-CDS-H-paniculata_contig46287:644..771Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46287 645..771 -
1622930382.5266972-CDS-H-paniculata_contig46287:971..10341622930382.5266972-CDS-H-paniculata_contig46287:971..1034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46287 972..1034 -
1691481266.5679915-CDS-H-paniculata_contig46287:971..10341691481266.5679915-CDS-H-paniculata_contig46287:971..1034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46287 972..1034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46287.11561.1

>prot_H-paniculata_contig46287.11561.1 ID=prot_H-paniculata_contig46287.11561.1|Name=mRNA_H-paniculata_contig46287.11561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
MRWEASLGCPDHPKNVMGISEVQRRGDRLIDKRNICTTCRIAGKGAGILA
SELLEVDDIYDPIARPGQVLQRVVDRVSESQRARLNSCGNASSSDSQA
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mRNA from alignment at H-paniculata_contig46287:37..1034-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46287.11561.1 ID=mRNA_H-paniculata_contig46287.11561.1|Name=mRNA_H-paniculata_contig46287.11561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=998bp|location=Sequence derived from alignment at H-paniculata_contig46287:37..1034- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCTGGGAGGCGTCCTTGGGCTGCCCAGATCACCCGAAAAACGTCAT
GGGCATCTCTGAGGTGCGAGTTATTGTGTCCATGGGTCGACATGGTGTGT
ACTATTTGAACCGTCACTCTAGGTTCCACAACAAGTAACGAGATATTTTC
GTAGTGTTCTTCCTTATTCAATACCGGTAAACAGCGACCACGGGTTTTTT
CCCATGACAGCATTTTTTTAGTCTCCTATGGTTGGTAATTGTTGTTGCTC
GCCTCATGCGCAGGTCCAGAGAAGGGGTGACCGCTTGATAGACAAGAGAA
ATATCTGTACAACTTGCCGCATAGCGGGCAAGGGAGCTGGGATTCTTGCA
TCAGAGCTGCTTGAGGTGGACGACATCTACGACCCTATAGGTAACATTCT
GATAGGCAACATGTGTTCCAGCCAAAATCACAACAATTTCTTGTTAATTG
AGTGGAACAATAGCCATAATAACAGCGTTGACGTGGTTTTCATGTTGCTG
ACTCGTCCTTTGTAAAATCAGGTAGGACTAGTTGGATAACGTCCCGATTG
GAGAATTTTGGAACTGTACGATATGCGCTCTAGCCTACGACAGTACGTGT
TTCGCTGCCGGATGTGGGCAGGGGGCGTCGCATGAATTACACACTGGACA
TTCCCGGGCTGTTAGCCCTGTCAGCTGCCCTCTGATGAGCAGCATGAAGG
CGCAACCTACATATACTGTAGAACATTTCTTTTCGCCGGGGGTGTCGTTT
ATTTACCCGATCGATGAAACTTGTCTCAATGTAATACCAGCGAATGGTTC
CTACGTCAGTTGTAAACCACCCTCTTTCATACCACTTCGGTGTCCATACC
TTTCAGTCAACGCGAACACATGTCACGGATGTCTTCCATTTTAGCGCGTC
CAGGTCAAGTACTTCAGCGAGTGGTGGACCGTGTCTCCGAGTCTCAGAGA
GCCAGGCTCAACAGCTGCGGGAATGCCAGCAGCTCAGATTCTCAAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig46287:37..1034-

>mRNA_H-paniculata_contig46287.11561.1 ID=mRNA_H-paniculata_contig46287.11561.1|Name=mRNA_H-paniculata_contig46287.11561.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig46287:37..1034- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCTGGGAGGCGTCCTTGGGCTGCCCAGATCACCCGAAAAACGTCAT
GGGCATCTCTGAGATGCGCTGGGAGGCGTCCTTGGGCTGCCCAGATCACC
CGAAAAACGTCATGGGCATCTCTGAGGTCCAGAGAAGGGGTGACCGCTTG
ATAGACAAGAGAAATATCTGTACAACTTGCCGCATAGCGGGCAAGGGAGC
TGGGATTCTTGCATCAGAGCTGCTTGAGGTGGACGACATCTACGACCCTA
TAGGTCCAGAGAAGGGGTGACCGCTTGATAGACAAGAGAAATATCTGTAC
AACTTGCCGCATAGCGGGCAAGGGAGCTGGGATTCTTGCATCAGAGCTGC
TTGAGGTGGACGACATCTACGACCCTATAGCGCGTCCAGGTCAAGTACTT
CAGCGAGTGGTGGACCGTGTCTCCGAGTCTCAGAGAGCCAGGCTCAACAG
CTGCGGGAATGCCAGCAGCTCAGATTCTCAAGCGCGCGTCCAGGTCAAGT
ACTTCAGCGAGTGGTGGACCGTGTCTCCGAGTCTCAGAGAGCCAGGCTCA
ACAGCTGCGGGAATGCCAGCAGCTCAGATTCTCAAGCG
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