prot_H-paniculata_contig46270.11560.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig46270.11560.1
Unique Name	prot_H-paniculata_contig46270.11560.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	85

Homology

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BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5JSK5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK5_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.970e-9
Identity = 35/88 (39.77%), Postives = 50/88 (56.82%), Query Frame = 0

Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIAL-MQDQM---EGDS-KKVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 83
            E TP  +P+YN VA+R LGL+++  +A  +Q  +   E  S   +WAEA  +ACN  N + T+S     +PYE W+G   P E   PF
Sbjct:   28 EFTPAYSPEYNGVAERALGLIKDAALAARIQAPILYPEAPSYPSLWAEATAWACNALNCTSTTSNPDKKSPYEMWHGHPPPPEATYPF 115

[Close]

BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 6.920e-9
Identity = 31/88 (35.23%), Postives = 47/88 (53.41%), Query Frame = 0

Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQME-----GDSKKVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 83
            E TP  +P+YN VA+R LGL+++  IA             + + +WAEA+ ++CN  N + T+S     +PYE W+G   P     PF
Sbjct:  458 EFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF 545

[Close]

BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5JLP8_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP8_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.360e-8
Identity = 30/91 (32.97%), Postives = 50/91 (54.95%), Query Frame = 0

Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQMEGDSK--------KVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 83
            E TP  +P+YN VA+R LGL+++  +A    +++  ++         +WAEA+ ++CN  N + T+S     +PYE W+G   P     PF
Sbjct:   28 EFTPAHSPEYNGVAERALGLIKDAALAA---RIQAPTRYPGAPNYPSLWAEAIVWSCNALNCTSTTSNPEKKSPYEMWHGHPPPRGATYPF 115

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BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.420e-8
Identity = 31/88 (35.23%), Postives = 45/88 (51.14%), Query Frame = 0

Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQME-----GDSKKVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 83
            E TP  +P+YN VA+R LGL+++  +A             +    WAEA+ +ACN  N + T+S     +PYE W+G   P     PF
Sbjct:  686 EFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYPSFWAEAIAWACNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF 773

[Close]

BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5JLU0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU0_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.600e-8
Identity = 30/88 (34.09%), Postives = 46/88 (52.27%), Query Frame = 0

Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQME-----GDSKKVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 83
            E TP  +P+YN VA+R LGL+++  +A             +   +WAEA+ ++CN  N + T+S     +PYE W+G   P     PF
Sbjct:   28 EFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF 115

[Close]

BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.300e-8
Identity = 30/88 (34.09%), Postives = 46/88 (52.27%), Query Frame = 0

Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQME-----GDSKKVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 83
            E TP  +P+YN VA+R LGL+++  +A             +   +WAEA+ ++CN  N + T+S     +PYE W+G   P     PF
Sbjct:  307 EFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF 394

[Close]

BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.320e-8
Identity = 30/88 (34.09%), Postives = 46/88 (52.27%), Query Frame = 0

Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQME-----GDSKKVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 83
            E TP  +P+YN VA+R LGL+++  +A             +   +WAEA+ ++CN  N + T+S     +PYE W+G   P     PF
Sbjct:  825 EFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF 912

[Close]

BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.330e-8
Identity = 30/88 (34.09%), Postives = 46/88 (52.27%), Query Frame = 0

Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQME-----GDSKKVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 83
            E TP  +P+YN VA+R LGL+++  +A             +   +WAEA+ ++CN  N + T+S     +PYE W+G   P     PF
Sbjct:  660 EFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF 747

[Close]

BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.330e-8
Identity = 30/88 (34.09%), Postives = 46/88 (52.27%), Query Frame = 0

Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQME-----GDSKKVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 83
            E TP  +P+YN VA+R LGL+++  +A             +   +WAEA+ ++CN  N + T+S     +PYE W+G   P     PF
Sbjct:  673 EFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF 760

[Close]

BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.330e-8
Identity = 30/88 (34.09%), Postives = 46/88 (52.27%), Query Frame = 0

Query:    1 ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQME-----GDSKKVWAEAMNYACNITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPF 83
            E TP  +P+YN VA+R LGL+++  +A             +   +WAEA+ ++CN  N + T+S     +PYE W+G   P     PF
Sbjct:  816 EFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPF 903

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig46270.11560.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JSK5_9PHAE	1.970e-9	39.77	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K1N9_9PHAE	6.920e-9	35.23	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5JLP8_9PHAE	2.360e-8	32.97	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5JXF7_9PHAE	2.420e-8	35.23	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JLU0_9PHAE	2.600e-8	34.09	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5KSG8_9PHAE	3.300e-8	34.09	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JTI6_9PHAE	3.320e-8	34.09	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JZQ8_9PHAE	3.330e-8	34.09	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JN00_9PHAE	3.330e-8	34.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KF60_9PHAE	3.330e-8	34.09	Uncharacterized protein n=12 Tax=Ectocarpus sp. CC...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..83 e-value: 1.3E-5 score: 26.5
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..81

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig46270	contig	H-paniculata_contig46270:3..257 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig46270.11560.1	mRNA_H-paniculata_contig46270.11560.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig46270 3..257 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig46270.11560.1 ID=prot_H-paniculata_contig46270.11560.1|Name=mRNA_H-paniculata_contig46270.11560.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
ELTPPGTPQYNSVAQRRLGLLREKTIALMQDQMEGDSKKVWAEAMNYACN
ITNMSCTSSIEGNVTPYEKWYGTTAPLEHLQPFGT

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR012337	RNaseH-like_sf