mRNA_H-paniculata_contig4625.11558.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4625.11558.1
Unique NamemRNA_H-paniculata_contig4625.11558.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4625.11558.1 vs. uniprot
Match: D8LTM6_ECTSI (Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM6_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 2.120e-6
Identity = 32/54 (59.26%), Postives = 37/54 (68.52%), Query Frame = 3 
Query:    3 VRRAYNMEKAASGRSRRQSTAISVSQLMILPCAR----IRSNMSTVLVAVEERS 152
            V RAYNMEKAASGRSRRQS  I+VSQLM LP AR     +    ++L  V+E S
Sbjct:  181 VGRAYNMEKAASGRSRRQSANINVSQLMTLPGARSTGGAKPGAGSILYEVDESS 234
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4625.11558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTM6_ECTSI2.120e-659.26Phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4625contigH-paniculata_contig4625:5868..8219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size174
Cds size153
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4625.11558.1prot_H-paniculata_contig4625.11558.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4625 5888..8219 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930382.1580136-UTR-H-paniculata_contig4625:5867..58871622930382.1580136-UTR-H-paniculata_contig4625:5867..5887Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4625 5868..5887 +
1691481266.3947606-UTR-H-paniculata_contig4625:5867..58871691481266.3947606-UTR-H-paniculata_contig4625:5867..5887Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4625 5868..5887 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930382.1747046-CDS-H-paniculata_contig4625:5887..59621622930382.1747046-CDS-H-paniculata_contig4625:5887..5962Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4625 5888..5962 +
1691481266.4051623-CDS-H-paniculata_contig4625:5887..59621691481266.4051623-CDS-H-paniculata_contig4625:5887..5962Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4625 5888..5962 +
1622930382.1961026-CDS-H-paniculata_contig4625:8141..82191622930382.1961026-CDS-H-paniculata_contig4625:8141..8219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4625 8142..8219 +
1691481266.4128728-CDS-H-paniculata_contig4625:8141..82191691481266.4128728-CDS-H-paniculata_contig4625:8141..8219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4625 8142..8219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4625.11558.1

>prot_H-paniculata_contig4625.11558.1 ID=prot_H-paniculata_contig4625.11558.1|Name=mRNA_H-paniculata_contig4625.11558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
MEKAASGRSRRQSTAISVSQLMILPCARIRSNMSTVLVAVEERSVGESRQ
E
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mRNA from alignment at H-paniculata_contig4625:5868..8219+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4625.11558.1 ID=mRNA_H-paniculata_contig4625.11558.1|Name=mRNA_H-paniculata_contig4625.11558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2352bp|location=Sequence derived from alignment at H-paniculata_contig4625:5868..8219+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTCGAAGAGCTTACAACATGGAGAAAGCGGCTTCGGGGCGTTCAAGG
CGGCAATCAACAGCTATCAGCGTCAGCCAGCTCATGATTCTCCCGGTAAG
TATTGGGTGATGACGATGACGATGATTTATGATGATGCTGCCCTTGTTCG
TTCTACGATGATAGAGATCAACGGGGTGGGGAAGTGTAAGTTTCTTTGTT
GATTCGCAGTTGAGAACGTTAAAAGTTCTTCTATCATGGGAGCACTTGAA
AAATATTCGCCTGGGTTTAGGGGTGTGGAGGCAGATGGAAATAAGGTGCT
CACCCCCGGTTTATTCGTTTCAATCGTAGCATAGTAGTACCGTGAAGTCG
GAGGAGTCGCACCCCGCCGCGAATGTGTTTCAACTGCGACTATTATCTTG
AGAAACGGAGACAGATAATACGCGATCGAAAGAACAGGATAATTGACAGG
TTTCCTGAAGATCTTCCCAGTGGCGGACTATTCGTTTGCAGTAGCGCCGT
CGTTCTCAAGATAATCGCGTGCAAAACAATGCTCGCACCCCCGTGGTGCG
TTAGATATCCCCGATTGATACGGTTCTCGCCGCATTCGTTGATACGATCT
AGGGTGTACATCTAATACAGATGCTAGTGCTGGACATTCAGACAAGTACC
CCAAACTTTCGTCCGAGGCATTTGCAATGCTCTTCTTCGTCCGGAGGATG
GAATCTTTGGCGCGCTGTACGGAACATACCCTGTGTGTATTTCATATGGG
TTTCATCATCAGGCACAGCATCTCGCGCAAGACAGGACGCACCCTGAGGA
TGACTGCTTATGCGTCGATGTGCAGGTTGCACCCGCCTGATCAGTAGAGT
TTCTTGTGCAAAGGGGACTCTAGTTTGCAAATTTCGATTTGATGGTGTTA
AGCTAACAGTAAACCTCCTCGTCCCAGACCCCAGTCCATCCACACCAACG
GCTCCTTACGGAACGGGTTCTTTGTCGAAATCAGTGACCCTTCGTATCTC
TCACAGAATGCAGGATATGAATGATGAAAATGAACTATTTTCGCAAGGAG
AAGCCGGTCTGGGTAAGCGGTACTTTTCGAAACATTCGATTCGTGTTGAA
AGTCGGCAGTTTTTTTCGAGCGTTCCAGAGGCATCGGTGCCCAAAAGCAG
ATATGGATACCCAAAAACAGATCTGCGACGAGTTGCGTACCAATGTCTGA
TATAATCTATGTTGTAGTTTACGAAAAAACAAATATATCAGAAAGCACAT
CACAGAGCTGCGTCCCGAGAGGGTCCAGGTTAGTCGTAGAAACTCATTCA
AACGAGTTAAACACTCTTTGGACGTGTGACATGTTCCCTAGGGCATACTC
TCAAAAGCCCCAAGCTCGGCATGATCATAACGGGATCAGCCCTCGAGACG
AGCGCCCAGTACCATGCGTCGATCAGGTATCATCGCGTGAGAAGATCAAG
GACTTCAGCAAAGGCATGGAGTTACCATAGCGTACATGATACGTGCGAGG
CCTTCAGCCAGTGACTACAAGTAAATTTTCATGTACACAATTCCTACGTT
ACCGCAAACCATGAGAGATATCCTGTGGACCGTTCCAGGATTAATATAAT
ATAGCCGGCCCTATGGTGTTCAAGTAGTTTGTTAGTGCGATCATGCCCAA
TGGACGCTCTCCCACATGGCATCACTCAGCAAACACGCCACTAGCTAGAA
TACGACGAAAATTAAAGCTGTCGAAGAATAAACATTGGAGTCCACACTCA
GCTGTCGAATCAAACGTGGAGTCACCTTGGCACCGAATCTTTCCAAACGA
GAATCATATTCCGCCAGCAGAAAAACAAAACATGGGTGTCCCACCACACG
TGGGGCAATTCAAAACGATGGTCATTTTTGCCCCCGATATTTTCTCTATT
GTTTTCCCTTCGTTTTCTCGATAATGTGATGATACCATTTTTTTATCCAA
GGAACCGGAAAAACGTAAAAATAGAGCTGAGGAACACTATCACAATAGTA
TAAAACAGCAGGCAACGCACACATACACACACATACAAACGTTTTTATCC
TGAAATTTCGAGAAATAAAAAAAAGTCGAAGAGCAAAAAAGAGAAGGCGA
GAAAACAAAAAATAGAGGGGGTGGGAATAGAAGAAAACCCCCATCAATAA
TAACAACAACAACGCTTAGAACTACCCCTTCTACATGAGCAGCAGCAACA
CATGGAATATCAAACGTTAGTTCGCCCTATCACAATGAACAACCTTCCCA
CTCCTGCTTCTACTACTGCCGCAGTGTGCACGTATACGGTCTAACATGTC
AACAGTGTTGGTAGCGGTAGAAGAACGGAGCGTTGGCGAGAGCAGACAGG
AG
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Coding sequence (CDS) from alignment at H-paniculata_contig4625:5868..8219+

>mRNA_H-paniculata_contig4625.11558.1 ID=mRNA_H-paniculata_contig4625.11558.1|Name=mRNA_H-paniculata_contig4625.11558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig4625:5868..8219+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGAAAGCGGCTTCGGGGCGTTCAAGGCGGCAATCAACAGCTATCAG
CGTCAGCCAGCTCATGATTCTCCCGATGGAGAAAGCGGCTTCGGGGCGTT
CAAGGCGGCAATCAACAGCTATCAGCGTCAGCCAGCTCATGATTCTCCCG
TGTGCACGTATACGGTCTAACATGTCAACAGTGTTGGTAGCGGTAGAAGA
ACGGAGCGTTGGCGAGAGCAGACAGGAGTGTGCACGTATACGGTCTAACA
TGTCAACAGTGTTGGTAGCGGTAGAAGAACGGAGCGTTGGCGAGAGCAGA
CAGGAG
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