mRNA_H-paniculata_contig4624.11555.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4624.11555.1
Unique NamemRNA_H-paniculata_contig4624.11555.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4624.11555.1 vs. uniprot
Match: A0A6H5KZC7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZC7_9PHAE)

HSP 1 Score: 288 bits (738), Expect = 2.940e-85
Identity = 161/275 (58.55%), Postives = 184/275 (66.91%), Query Frame = 1 
Query:  127 RRPKIKWGAMRRA-KTLSVLALTVGTKAADQASTAAGASGNTNETNAAGGLLESRE------TQPFFIQDPADGLCLSGSTFKRCAVDTLWRVEGEPGHLSVRHMAVQEDGEEDAKQPCLDRKSCDSPTSPLRTSSCEHCGAKGWNLLGDADAGYTLSVGPGQP--AAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGLLCIIREGEVAKMGGCGEQATLTLQFASEDDMAAMGAPGVRLITAASDGDKKGVKRWLDQGVDVDSRDWDNLTPL 924
            RR  I W  + R   +LSVLA+T              A GN NE +A   L   RE       +PFFIQDP DGLCLSG TFKRCAVDTLW+VEGE G  S+R +AV EDGEE+AKQ CLDRKSCDS TS LRT+SC+HCGAKGW+++GD D+ YTLSVG  QP  AA A                           +   +CI+R+GE A+MGGC EQ  LTLQFASE DMAAMGAPGVRLITAASDG+KKGV++WLDQGVDVDSRDWDNLTPL
Sbjct:   14 RRRAITWWRLHRVVASLSVLAITF-----------TSARGNENEASATSHLENGREGNNSNNNKPFFIQDPTDGLCLSGGTFKRCAVDTLWKVEGEAGRHSIRRVAVLEDGEEEAKQLCLDRKSCDSATSVLRTASCDHCGAKGWDIVGDVDSSYTLSVGRVQPVVAAAAAAASDGMALSTVFEQAAAGVGVGGGVAAVAQMCIVRDGETARMGGCEEQTRLTLQFASEHDMAAMGAPGVRLITAASDGNKKGVRKWLDQGVDVDSRDWDNLTPL 277
[Close]
BLAST of mRNA_H-paniculata_contig4624.11555.1 vs. uniprot
Match: A0A6U4F0Y7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4F0Y7_9STRA)

HSP 1 Score: 184 bits (468), Expect = 8.960e-48
Identity = 98/209 (46.89%), Postives = 125/209 (59.81%), Query Frame = 1 
Query:  301 FFIQDPADGLCLSGSTFKRCAVDTLWRVEGEPGHLSVRHMAVQEDGEEDAKQPCLDRKSCDSPTSPLRTSSCEHCGAKGWNLLGDADAGYTLSVGPGQPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGLLCIIREGEVAKMGGCGE-QATLTLQFASEDDMAAMGAPGVRLITAASDGDKKGVKRWLDQGVDVDSRDWDNLTPL 924
            FF+Q   DGLCL+G+ FKRCA+DTLW V G+PG   + H AV E G+ D    CLDRK+C    SPLR  SC HCGAK WN+LGD+D GY LS                                      GG  C+ R+G  AK+  C +  A LTLQF ++DD+ AM +PG R+ITAASDG+++ VK++L +GVDV++RDWDNLT L
Sbjct:   33 FFLQSSEDGLCLAGAEFKRCAIDTLWYVTGKPGAYQLHHRAVDE-GDSDV---CLDRKNCKGSDSPLRLGSCNHCGAKAWNILGDSDTGYVLS------------------------------------EDGGKNCLQRDGSKAKVVSCDDGYALLTLQFTTQDDLEAMSSPGARMITAASDGEERAVKKYLKEGVDVNARDWDNLTAL 201
[Close]
BLAST of mRNA_H-paniculata_contig4624.11555.1 vs. uniprot
Match: A0A7S2SDH4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SDH4_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.670e-45
Identity = 95/209 (45.45%), Postives = 122/209 (58.37%), Query Frame = 1 
Query:  301 FFIQDPADGLCLSGSTFKRCAVDTLWRVEGEPGHLSVRHMAVQEDGEEDAKQPCLDRKSCDSPTSPLRTSSCEHCGAKGWNLLGDADAGYTLSVGPGQPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGLLCIIREGEVAKMGGCGEQAT-LTLQFASEDDMAAMGAPGVRLITAASDGDKKGVKRWLDQGVDVDSRDWDNLTPL 924
            FF+QDP DGLCL G+ FKRCA+DTLW V G PG+  + H  V+E  +E     CLD+ +C  P S  R  SC+HCGAK WN+LGD ++GY LS                                      GG  C+ R+G  AKM  C +  T +TLQFA+ DD+  M + G RLIT+ASDG+KK VK +LD+G+DV+SRDWDNLT +
Sbjct:   51 FFLQDPNDGLCLGGAEFKRCAIDTLWYVTGRPGNYQLHHRKVEEVEDE----LCLDKVNCHLPESATRLGSCKHCGAKKWNILGDQESGYVLS------------------------------------EDGGKNCLSRDGTKAKMNKCDDGYTAMTLQFATRDDIKVMESQGARLITSASDGEKKVVKEFLDEGIDVNSRDWDNLTAI 219
[Close]
BLAST of mRNA_H-paniculata_contig4624.11555.1 vs. uniprot
Match: A0A7R9U5G3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5G3_9STRA)

HSP 1 Score: 174 bits (440), Expect = 5.670e-44
Identity = 93/209 (44.50%), Postives = 120/209 (57.42%), Query Frame = 1 
Query:  301 FFIQDPADGLCLSGSTFKRCAVDTLWRVEGEPGHLSVRHMAVQEDGEEDAKQPCLDRKSCDSPTSPLRTSSCEHCGAKGWNLLGDADAGYTLSVGPGQPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGLLCIIREGEVAKMGGCGE-QATLTLQFASEDDMAAMGAPGVRLITAASDGDKKGVKRWLDQGVDVDSRDWDNLTPL 924
            FF+Q   DGLCL+G  FKRCA+DTLW V G+PG   + H  V    +E+  + CLDRK C    SPLR  SC HCGAK WN+LGDA+ GY LS                                      GG  C+ R+G  A +  C +  A L LQF ++DD+ +M +PG R+ITAASDGD++ VK++L +GVDV++RDWDNLT L
Sbjct:   32 FFLQSSEDGLCLAGPEFKRCALDTLWYVTGKPGAYQLHHRPV----DEEENELCLDRKVCKGSESPLRLGSCNHCGAKAWNILGDAETGYVLS------------------------------------EDGGKNCLQRDGTKAMVTSCDDGYALLFLQFTTQDDLESMSSPGARMITAASDGDERMVKKYLKEGVDVNARDWDNLTAL 200
[Close]
BLAST of mRNA_H-paniculata_contig4624.11555.1 vs. uniprot
Match: W7T4W4_9STRA (Ankyrin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4W4_9STRA)

HSP 1 Score: 174 bits (440), Expect = 6.170e-44
Identity = 96/212 (45.28%), Postives = 123/212 (58.02%), Query Frame = 1 
Query:  301 FFIQDPADGLCLSGSTFKRCAVDTLWRVEGEPGHLSVRHMAVQEDGEEDAKQPCLDRKSCDSPTSPLRTSSCEHCGAKGWNLLGDADAGYTLSVGPGQPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGLLCIIRE--GEVAKMGGCGEQA--TLTLQFASEDDMAAMGAPGVRLITAASDGDKKGVKRWLDQGVDVDSRDWDNLTPL 924
            FF+QDP+DG CL+G  FKRCA+DTLW V+G+PGH  + H  V+E  EE     CLD+KSC++  S +R +SC+HCGA  WN+LGD+D GY LS G G+                                     C++RE   +  KM  C +     L LQFA+ DD+ AM + G RLITAASDGDKK +K +L   VDV+SRDWD LT L
Sbjct:   47 FFLQDPSDGSCLAGGEFKRCAIDTLWYVQGKPGHYQIHHRPVEETDEE----LCLDKKSCNADKSDVRLASCKHCGATNWNILGDSDTGYVLSEGDGK------------------------------------YCLMREKGSKKTKMVLCEKDGYTALHLQFANRDDIKAMSSVGARLITAASDGDKKLIKNYLKNKVDVNSRDWDQLTAL 218
[Close]
BLAST of mRNA_H-paniculata_contig4624.11555.1 vs. uniprot
Match: A0A6H5KMP7_9PHAE (Ricin B-type lectin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMP7_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 1.110e-39
Identity = 95/217 (43.78%), Postives = 122/217 (56.22%), Query Frame = 1 
Query:  280 ESRETQP-FFIQDPADGLCLSGSTFKRCAVDTLWRVEGEPGHLSVRHMAVQEDGEEDAKQPCLDRKSCDSPTSPLRTSSCEHCGAKGWNLLGDADAGYTLSVGPGQPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGLLCIIREGEVAKMGGCGE-QATLTLQFASEDDMAAMGAPGVRLITAASDGDKKGVKRWLDQGVDVDSRDWDNLTPL 924
            +S  +QP FF+QDP+DG CL G TFKRC VDTLW V G      + H  + EDGE+D    CLDR SC    S L+  +C+ C AK WN+LGDA++GY L+ G G                                      C+ R+GE AK+  C    A+L+LQFAS++D+A M +PG R ITAASDGD   VK +L  G+DV+S+DWD LT L
Sbjct:   27 QSTTSQPSFFLQDPSDGQCLEGGTFKRCGVDTLWYVTGTNTQYQLHHRPL-EDGEDDT---CLDRVSCAGEGSELKLGACKKCCAKAWNILGDAESGYILTEGDGNRN-----------------------------------CLQRDGESAKVAPCDSGYASLSLQFASKEDIALMMSPGARFITAASDGDLNAVKTFLKDGLDVNSQDWDKLTAL 204
[Close]
BLAST of mRNA_H-paniculata_contig4624.11555.1 vs. uniprot
Match: A0A7S1FPA0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FPA0_9STRA)

HSP 1 Score: 155 bits (393), Expect = 4.800e-39
Identity = 91/222 (40.99%), Postives = 115/222 (51.80%), Query Frame = 1 
Query:  307 IQDPADGLCLSGSTFKRCAVDTLWRVEGEPGHLSVRHMAVQED---GEEDAKQPCLDRKSCDSP---------TSPLRTSSCEHCGAKGWNLLGDADAGYTLSVGPGQPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGLLCIIREGEVAKMGGCGEQ----ATLTLQFASEDDMAAMGAPGVRLITAASDGDKKGVKRWLDQGVDVDSRDWDNLTPL 924
            + D +DG+C+SG+ ++RCA+DTLW V G PG  SV      ED   G +D +  CL RKSCD           +  L+  SC HC A  WN+LGDA  GY LS                                     SGG LC+ R+G+   +  C         + LQF ++DD+AAM +PG RLITAASDGDKK V+R L  GVDV+S DWD LTPL
Sbjct:   47 LTDSSDGMCMSGAIYRRCAIDTLWYVTGSPGSYSVHLRPSDEDAYEGGKDVEDLCLVRKSCDEVKKGETKDFGSEDLKVGSCGHCSAPKWNILGDATTGYVLST------------------------------------SGGALCVHRDGDKVTVAACDNADLPYTAMQLQFTNKDDIAAMSSPGARLITAASDGDKKLVQRMLKDGVDVNSADWDKLTPL 232
[Close]
BLAST of mRNA_H-paniculata_contig4624.11555.1 vs. uniprot
Match: A0A835YJG8_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJG8_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.740e-38
Identity = 91/222 (40.99%), Postives = 117/222 (52.70%), Query Frame = 1 
Query:  286 RETQPFFIQDPADGLCLSGSTFKRCAVDTLWRVEGEPGHLSVRHMAVQEDGEEDAKQPCLDRKSCDSPTSPLRTSSCEHCGAKGWNLLGDADAGYTLSVGPGQPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGLLCIIRE---GEVAKMGGC------GEQATLTLQFASEDDMAAMGAPGVRLITAASDGDKKGVKRWLDQGVDVDSRDWDNLTPL 924
            R+      QD  DGLCLSG TFKRCA+DTLW   G      + H  V+EDGEE+    CL RKSCD+  + L+  +C  CG+  W++ G A+ GY LS   G+                                     C++R    G+ A M  C      G +A L LQ+ S++D+  M + GVRLITAASDGDKK VK+WLD GVDVD++DWD LT L
Sbjct:   67 RKESAVLAQDAVDGLCLSGDTFKRCAIDTLWYATGTKADYQIHHRPVEEDGEEEGL--CLGRKSCDTVHTALKRVACGGCGSVSWDVSGSAEDGYYLSALQGKS------------------------------------CLVRHKDRGDAAMMVDCKQADKEGGRARLKLQYTSQEDLKTMSSGGVRLITAASDGDKKAVKKWLDSGVDVDAQDWDQLTAL 250
[Close]
BLAST of mRNA_H-paniculata_contig4624.11555.1 vs. uniprot
Match: A0A7S1FMU5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMU5_9STRA)

HSP 1 Score: 155 bits (393), Expect = 3.810e-38
Identity = 91/222 (40.99%), Postives = 115/222 (51.80%), Query Frame = 1 
Query:  307 IQDPADGLCLSGSTFKRCAVDTLWRVEGEPGHLSVRHMAVQED---GEEDAKQPCLDRKSCDSP---------TSPLRTSSCEHCGAKGWNLLGDADAGYTLSVGPGQPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGLLCIIREGEVAKMGGCGEQ----ATLTLQFASEDDMAAMGAPGVRLITAASDGDKKGVKRWLDQGVDVDSRDWDNLTPL 924
            + D +DG+C+SG+ ++RCA+DTLW V G PG  SV      ED   G +D +  CL RKSCD           +  L+  SC HC A  WN+LGDA  GY LS                                     SGG LC+ R+G+   +  C         + LQF ++DD+AAM +PG RLITAASDGDKK V+R L  GVDV+S DWD LTPL
Sbjct:   47 LTDSSDGMCMSGAIYRRCAIDTLWYVTGSPGSYSVHLRPSDEDAYEGGKDVEDLCLVRKSCDEVKKGETKDFGSEDLKVGSCGHCSAPKWNILGDATTGYVLST------------------------------------SGGALCVHRDGDKVTVAACDNADLPYTAMQLQFTNKDDIAAMSSPGARLITAASDGDKKLVQRMLKDGVDVNSADWDKLTPL 232
[Close]
BLAST of mRNA_H-paniculata_contig4624.11555.1 vs. uniprot
Match: A0A7S1FMT5_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMT5_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.160e-37
Identity = 91/222 (40.99%), Postives = 115/222 (51.80%), Query Frame = 1 
Query:  307 IQDPADGLCLSGSTFKRCAVDTLWRVEGEPGHLSVRHMAVQED---GEEDAKQPCLDRKSCDSP---------TSPLRTSSCEHCGAKGWNLLGDADAGYTLSVGPGQPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGLLCIIREGEVAKMGGCGEQ----ATLTLQFASEDDMAAMGAPGVRLITAASDGDKKGVKRWLDQGVDVDSRDWDNLTPL 924
            + D +DG+C+SG+ ++RCA+DTLW V G PG  SV      ED   G +D +  CL RKSCD           +  L+  SC HC A  WN+LGDA  GY LS                                     SGG LC+ R+G+   +  C         + LQF ++DD+AAM +PG RLITAASDGDKK V+R L  GVDV+S DWD LTPL
Sbjct:   47 LTDSSDGMCMSGAIYRRCAIDTLWYVTGSPGSYSVHLRPSDEDAYEGGKDVEDLCLVRKSCDEVKKGETKDFGSEDLKVGSCGHCSAPKWNILGDATTGYVLST------------------------------------SGGALCVHRDGDKVTVAACDNADLPYTAMQLQFTNKDDIAAMSSPGARLITAASDGDKKLVQRMLKDGVDVNSADWDKLTPL 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4624.11555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5KZC7_9PHAE2.940e-8558.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U4F0Y7_9STRA8.960e-4846.89Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2SDH4_9STRA1.670e-4545.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9U5G3_9STRA5.670e-4444.50Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7T4W4_9STRA6.170e-4445.28Ankyrin n=2 Tax=Monodopsidaceae TaxID=425072 RepID... [more]
A0A6H5KMP7_9PHAE1.110e-3943.78Ricin B-type lectin domain-containing protein n=2 ... [more]
A0A7S1FPA0_9STRA4.800e-3940.99Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A835YJG8_9STRA2.740e-3840.99Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A7S1FMU5_9STRA3.810e-3840.99Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1FMT5_9STRA1.160e-3740.99Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4624contigH-paniculata_contig4624:339..7945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.9
Seed ortholog evalue7.3e-50
Seed eggNOG ortholog2880.D7FRY0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1254
Cds size1254
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4624.11555.1prot_H-paniculata_contig4624.11555.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4624 339..7945 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930381.9222734-CDS-H-paniculata_contig4624:338..5181622930381.9222734-CDS-H-paniculata_contig4624:338..518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4624 339..518 -
1691481266.2953513-CDS-H-paniculata_contig4624:338..5181691481266.2953513-CDS-H-paniculata_contig4624:338..518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4624 339..518 -
1622930381.937268-CDS-H-paniculata_contig4624:984..11071622930381.937268-CDS-H-paniculata_contig4624:984..1107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4624 985..1107 -
1691481266.3063664-CDS-H-paniculata_contig4624:984..11071691481266.3063664-CDS-H-paniculata_contig4624:984..1107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4624 985..1107 -
1622930381.949652-CDS-H-paniculata_contig4624:1598..17751622930381.949652-CDS-H-paniculata_contig4624:1598..1775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4624 1599..1775 -
1691481266.3154736-CDS-H-paniculata_contig4624:1598..17751691481266.3154736-CDS-H-paniculata_contig4624:1598..1775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4624 1599..1775 -
1622930381.9723601-CDS-H-paniculata_contig4624:2203..24261622930381.9723601-CDS-H-paniculata_contig4624:2203..2426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4624 2204..2426 -
1691481266.3253846-CDS-H-paniculata_contig4624:2203..24261691481266.3253846-CDS-H-paniculata_contig4624:2203..2426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4624 2204..2426 -
1622930381.9923096-CDS-H-paniculata_contig4624:2969..30841622930381.9923096-CDS-H-paniculata_contig4624:2969..3084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4624 2970..3084 -
1691481266.3385015-CDS-H-paniculata_contig4624:2969..30841691481266.3385015-CDS-H-paniculata_contig4624:2969..3084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4624 2970..3084 -
1622930382.0093248-CDS-H-paniculata_contig4624:7509..79451622930382.0093248-CDS-H-paniculata_contig4624:7509..7945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4624 7510..7945 -
1691481266.352044-CDS-H-paniculata_contig4624:7509..79451691481266.352044-CDS-H-paniculata_contig4624:7509..7945Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4624 7510..7945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4624.11555.1

>prot_H-paniculata_contig4624.11555.1 ID=prot_H-paniculata_contig4624.11555.1|Name=mRNA_H-paniculata_contig4624.11555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=418bp
FHTTLLYNLTPQVPSVTPCSYLVRDLAPVKPVDSPLRMQNTQRRPKIKWG
AMRRAKTLSVLALTVGTKAADQASTAAGASGNTNETNAAGGLLESRETQP
FFIQDPADGLCLSGSTFKRCAVDTLWRVEGEPGHLSVRHMAVQEDGEEDA
KQPCLDRKSCDSPTSPLRTSSCEHCGAKGWNLLGDADAGYTLSVGPGQPA
AVAAAAAASGGMALPAAFEAAAAAGAGAGGSGGLLCIIREGEVAKMGGCG
EQATLTLQFASEDDMAAMGAPGVRLITAASDGDKKGVKRWLDQGVDVDSR
DWDNLTPLIAASSQGHLDVVKILLQRGAGVNSKDKDNITALMEASIMDHR
DVVKYLLKESAEVDAKTTTGVTALWLAAGEGRKEVAASLLARGADVNNRR
TDGITAVMAAAVGGHKV*
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mRNA from alignment at H-paniculata_contig4624:339..7945-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4624.11555.1 ID=mRNA_H-paniculata_contig4624.11555.1|Name=mRNA_H-paniculata_contig4624.11555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7607bp|location=Sequence derived from alignment at H-paniculata_contig4624:339..7945- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCACACCACATTGCTGTACAACCTCACTCCACAGGTTCCCTCGGTGAC
ACCTTGTAGTTATCTAGTACGGGATCTAGCACCGGTTAAGCCGGTCGATT
CTCCGCTTCGAATGCAAAATACCCAGCGGCGACCCAAGATCAAGTGGGGA
GCGATGCGACGAGCGAAAACCCTGTCTGTTCTAGCCCTTACCGTAGGTAC
CAAGGCGGCTGACCAAGCTTCCACAGCGGCAGGAGCCAGTGGGAATACAA
ACGAGACTAACGCTGCAGGTGGCTTGTTGGAGAGTCGAGAAACACAGCCA
TTCTTCATACAGGACCCCGCCGATGGCCTTTGTCTCAGCGGAAGTACATT
CAAGCGCTGCGCAGTAGATACACTTTGGCGCGTGGAGGGGGAACCGGGGC
ACCTCTCCGTGCGACACATGGCTGTTCAAGAAGATGGTGAGACAAGTGCT
ATATATTTTTACCGTCTGTAAGGAGTAAGTATGTTGACTGTCTGTATTGA
AGAACTCCTTTGGTGCATGTCGGGTGCTTGCCTTTACGTCCTCCTGCCCG
CCAAAGAAGAGCAGTGATGACATTGTCAATTTATGGGTCGTTGTCGTGTG
TAGGTAGAAAAGCGAGTCCTAAGCACGTATCATATCGGAGTCTAATACTT
TTGCAGAGTAGTGACGGTTAAGTCTAGTGTGCTTGCAACACTTGAACACC
TGGCAGCCTTACGCGTGGCTACGTGGCCCGTTTCTATTTTAGTCATAACA
GGGATCACAACTTGAATTTACTACGGTTATACGTACTCCACTGCACCGTA
CTGTTTTGTATGTATAGAGTTATTAATGGTATAACCTTATGGAGGCATTG
TCTGTCGGCACTGTACGTGTGTCTCGACCTTTTGTGCACTGACAGGCATC
TACAGGTATTTACTGAAGCTCATGCTCTCTTGTTCCCTCTCCGTCAGCGT
TGCTACTGTACTGTGTTGTCTGGTTCTGTCGGGGCTATGATCGATGACTT
CAAGTTCGTACGTCATGCAGTGGATAACTTTTACTTATAGTATTAATAGT
ATAAGACTGTAAAAACGTAACAGACGTAACAGACGTAACAGACGAGTACA
AATACACCGTCCTCCCCGCTCTAAGGACACCACTAACTGTTGGCTGCACG
TCTGCACCCAGGAAAAAGTTCTCTTAGATCTAGGGATGGTGACTCTCGAT
CGCGAGTCTAGCCAACTTTCCCTGCCGCAGTCTACAAGCTACCTGTTTGG
AATGACCGTGTGACTGAGAACGAACACGCACGACATCTACTCTTGCCGAG
ACACAGGCTGTTCTCAGCAAGACCTGTTACAATTGGTCGTCACCCTGTTT
TTGGCTAAGTTGTGCGGGTTTGACGCTGAAATTTCGCCAAGATTTTGTAA
TTGGCAATAAAAGCAAAGTCGCATTTGCTCCTTTTTGATATCGATCGTAG
CTGTCGAGAAATTCAGGGAAACCCATTTTTTGGAAGAAAACAAAAAAGGT
GACACTCCAGTACCAGATTATCGTTGATATCTCGATAACTAAGACCGATA
GTGAAAAGGGAAAGTGAAAGTTCGTCCGTTGCCAATTACAGAATCTGCCT
CAAATTTTGGCATTCAATGTGAAAAATTGAGCTTGAAAAAGCAGAAAAAT
TGAAATTGGATTGTGGAGGAGTATGACCTGAACAATTAATTACAAAGCAA
CTTTTTGGCGAATTCTTCGACAGCTACGACCGATGTCAAAAAGGGGCAAG
TTCAGCTTTTTCGTATGGGCATTTACAAGATCCCTACAATTTTTCAGCTT
CTAATTGGTAACAGTCAGCTCAAACATTATATGATGACCTGCGCAGCTGT
CATTTGTAGGCTGGAAATTGAAGAACTTTGACCAGAGTGATTGTGAGCCT
AATTTCATGAATTAGGAGATAATTTTTTTGCAGAAATGTTGTAAACGCCA
GCAGAAGAACAGTTATACTTGGCCCCTTTTTTTGTATTGGTCATGATTGT
CGAAAAATTCGGTAGAAACAGATTTTGGCCCCGAATAGGTCACATACTCC
AAGGATACGTTTCCAGCGGATTTCTCGAGAAGTAACACCGATATTCTTGG
ATTCAACATCCGTGCCAAAATTCCAGCGCTTTGTTGATGAAATTCACCTA
ATAATAGCTAAAAAACTGAGGAACGGATTTTGGACTATGACCAGTACGCG
TGTAACAGCAGTTTTTCTTGATTTTCTCGACAGCTACGACCGGTATAGAA
AACGGGAAGTTTACATTTTTTTTGGTGTTGGTAGTCCCGACATTTTCGAA
AGATTTTGGCGTCCAATTCGGCATATTCTAGTATACACATGCGGTTATGT
CCGGTTTTATCGAGATCCATGGCTCATAGCATCAAATGCGCCACGAGCTG
TCTTTGTTTTGGTTTATGGTTTATGGTTTGTGGTGCATGAGTTCGTGCAT
CAGCTCAAAAAAGCGAGACGACGAAATCTGACAGGTCTTGTGGAAACTAC
AGTACCCACGGGTCAAACTATTCTCTGGGCATTATTATTATTATTATTAT
ATATATATTTTTTTTCGGGCATCGCGAGCTATCAGGGTTGACCGTTGATC
CCACAAAAAATGTGGGAATCGATAGATATTAGTGCGCTACACGTAATGCG
GATTTTGTTTTTGTTTCCACGATGAAATTTGAACGAGTTTCGGGCTTACC
GGTCTTCGGGGGTCCTAACCTATATCTTACGCAGATTTTGGCTCTTCGTT
TCTAGTTTTTGATTGAACCTATCCCTAAATCTCTGGTGGAAAGGGTGACC
GCTTCAGTTGTCGAAGTTTCAAGAAGTTAATGGCGCTAAGCTCAAATTAC
CGTGTTTCCGACAAAAATACGGTGAACAACACCCCCCTCCCATCCCCCCC
CAACACACGTTTTTCTCCCGTATTGTTCAGATAGTACAAAATTGGAACAA
ATTTCTCATGCCAATATCTACCGATCCTAAATGTTTTGAGTAAAATTGAC
GAATATTCGGCGAAAAAGCGGAAAACACACACACACACAATAGTTTAACC
CGTGGGTACTGTAGCTCGTATGGGATTATTGATAAATAGTGCCTTCTCTG
GCACCATCATGGTTAGATCAGCATCACCCAGAATGACAGCTCGTGCTGGA
CAGCAGATGCATGATACACTGTAAGACAGTAACTACAACGCAGTAAATAT
ACCACTCAGGTAATGCGACCCGTGGGATACACCTCGAAAATTTTTGGATG
CACAGCATGGTGTACACCCAACCCCTAACGTGAGTAAAATTTGAAGTTAT
ATATTATATTGCTGTTGTACGACGCTGTTCGTGATACATCCCCGTGATAC
GAGTTTGTGTATTCCATCTATTGAAGAGGGGAGAGGATGCGTGGCTTCTT
TTCAGTATTCAGTATTCGATATTTGATATTCTCTTAATGAAAGTCTTGGG
CCCTTGAGACGACTCAGTATTGTACAGGGTAACAATTTGTCATAATATCG
TCCAACACAAGACAAAACAATGCAGGAGTAACGAGAGGGATTTACAACGA
ACATCAGCCAATCAACGCCACCACCCACAACGCGAACGAAAGCCGACAAC
TAAGGCCAAGGATTAATTATTTATGATTTATGTCACACACAATGTGTCGA
GTCATTGGGTGAGATAAAAAGACATAGAGCGGCGTGTTAATTTTTTTAGT
ATGTACCTTGATACAAGCACCTTCCGTACACCATCTCGCCACCATGGTAG
TGTGTGGGAGGACACGAGAGAGAGCGAGCTCTGCGGCAGTGTAGACCTTC
ACGCAGGTTTATCTAAACTATGATAATGTCGAAGACATGAAAAAAAATAC
AGCAGTCAAATTACGATGAATTTTAGAATTACGCGGTAAATTCGCATTGC
AGATTGCGACGCTGGGTGCGAAAAGGGTATCCACTTCTCAAAACATCATC
CACGTCAAGGCCTAGGCCTTGCAGCTGAAAAATGAATAGATAATAGCGGT
CCCATTTTATTTTGTTATTTTCTTCGGTTGAGTCCATCCGTTCCGGGTAC
AAACTTCAACGGGGTTGCGTGAGAGGTAGCCATCTTTCCTACAAATTTTA
TACGGTGTTCACGCGAGTGCAAAATATAGCAAAATGCCCGTTTTTATTTT
TCTGACTTGATTTCGTTTAAAATTGATGTTCAATCGCTCGTGTATTGCGT
CATTATGATCTCTTTTTAGTCGTTGGGGTACGTGCACACAAGTACAGACT
GACTGCAAATAGATAAAACATAGCCTACAGCACCGTCATAAGGAGGAACG
TAGAACCTTTTTCTTTGGTGAACGTAGAAGAACAGAGGGTGAACATCGAT
ACTTTGTGGAAGCAGCGGAAAGGGTTTTGCCTTGGCCTTCCGGGGGTTAA
AAAAAACCCAGAAAAAAACATCGATACTTTGGGCGTCTTCGGAACCGCGC
ACAATGCCCAAACTTGGGTTAGAGTAGCTCGTTCGACTGCTAGGTGGGGA
CGAAGCAGGACCCGCAAAAAAGTGTTGTATTGGCTGCATAGCCCGAAAAC
TCTTCACTTGAAGAAAACACCGTTGAATCACTTTTTCCCTCCTGTGGTAA
GCAGGCTTGACAGCAATCCCACGGTCCGATTTACGCACAAAGTCTGACCT
TACGTGTGCTCGCTAGTCTCTACAACCTGCCCAGAGTACCTACCCACTAC
TGTACTCTAGTACGCCTAGGCTACACTAGACAGTATTTATTAACATTTGT
GTGTGTTCTCATGACATGACGTTACAATTGACGTACTTGTGCATATGTTG
AATCAAATATTGAAGCGATTTGGACTGCTTGACCACGGAAATGACTATAT
ATTCACGACAGGGGAGGAAGACGCCAAACAGCCGTGTTTGGATCGCAAGA
GCTGCGACTCGCCCACATCTCCGCTACGTACGTCCAGCTGTGAACACTGC
GGGGCTAAGGGATGGAATCTTCTAGGGTGAGTGATCATGGCTTGGTGTGA
AGTACGTGTGATGGGTGATATTAGTATCCCCTATGCTTCTGATTTTTTTT
TTCAAGTAGATTCGGAGATTGCTTCTCAAACATCGAGATCTACGTATCCC
CTCAACAGTTTTGCCAAGATGTTGTGAAGTTTATGGTGCGATGGGATTAC
ACTTGTCATAGATTAGGAGGAGAACCACCTGGGGGAATAGGAGAGGTGAT
CACGGTCTTCCTTTCAGTACGTGCGATCAGGCGTGGCGACTTTCTGTTAA
CGTGTAACATTTGTTTTTTTAGTCGGTTAGTCAGTTACATCATTATTTTC
AACTTGCCAGCCATCTGTTTGTCATAATCTTGATATTTCGTTGCATATCT
TATGCTCCACAGTATCTAGCTCGGTCACTAGTGTTATTAATAGGAGACTG
GAATTTTTTATTATTTATTATTTTCAGTTTTCCTTGATTCCTAAAGACTC
CTGAAGACTCCTAAAGACTCATTAGGTAAGTTGTTTTTTGTTTCCCTCGC
CTTGTCGGATTTCTTTCAGGGATGCGGATGCAGGATACACCTTATCAGTA
GGGCCAGGCCAGCCAGCAGCCGTAGCAGCGGCAGCGGCAGCGTCTGGGGG
TATGGCGTTACCCGCGGCCTTTGAGGCGGCTGCAGCGGCTGGGGCCGGTG
CTGGCGGGTCGGGTGGTCTATTGTGTATTATACGGGAAGGGGAAGTGGCG
AAAATGGGAGGTTGTGGCGAGCAGGCGACGTTGACGTTACAGGTGCATAA
TGAATGAATGATTAATTAATTAATTAATTAATGCTATTGGAAAAAAACAC
ATGGTGTTTCAATCGTTGACTGTCAAAGGTTTGTGTTAAAAAGTCTTGAT
ATGCATCACATCCCATGACCGCGAAAGGCATGGTCAAAGCGTGGTCAAAG
TGGGGGGATAGATGTATGGTGTATGTCCAGCAGTTGGGCTCGTGTGCCTG
GTTTGATTATTGATCATGTAGCCCAGGAGTTAGTTTTTCACACGTGGTAC
TGAGTGGGGTGTCCTGTAGGCACGAGCCCGTAGTTTGTCGTTGCAACTGC
ATTGCTTCCCTTGAGGAATGGCTGGTTTGCAGGCCCTGTAGACGTGAGCT
TTACTGCGAGTGAAGTCAGGTATTGGTGGTTGATGATACCCCCCCCATCT
GTGCTGTTGGCTATTTCCAGTTTGCGAGTGAAGACGACATGGCGGCGATG
GGAGCGCCAGGGGTACGACTGATCACAGCCGCGAGCGATGGGGACAAGAA
GGGGGTTAAGAGATGGCTGGATCAAGGGGTGGACGTGGACTCGAGGGATT
GGGACAATTTAACACCTCTGATTGCGGCATCTAGCCAAGGACATTTGGTG
AGGGGAAGGAGTGTATTTCTAACGTGCTTCGGGCGTTGACAACATGCAGG
GGTGGGCGTGTTGGCTGTAGTTGAGAATATGAATTGCTTATTTGTTACTG
TGCGCTTTATCCCATGCTCTCTCTCTCTCTCTCTGCCTGTTACTCCCGCG
CTATTTGTTCGTTGCTGGCTGTACAGCCTGTATTTTGCTGTGCGGCATGG
TTTTATTGAGTTTTGATTAAATGACCACATGCATACTGATACTGATACTG
ATATTGATATTGTTTATGGCCGCGGTTAACGTTCGGTAGTATCGTGATCG
TTCGTTCCTTGGTGTGCTAGAAATGGAAAGTGTTGTCACGAGATGATCAT
GCGCACCACAGAGTGTATAAACGTATGCTTTGGTCCTCTATCGTGCGTAA
GACAGGATGACTGCATGTACCATGTGACACTAGTTGGACTTGCATTGATG
TTGTTTTTGTCTTGGTATGGCATGACACGGTACGGCAGGATGTCGTGAAA
ATTCTTCTGCAACGGGGGGCGGGAGTGAATTCGAAGGACAAGGACAACAT
CACTGCTCTCATGGAGGCGTCTATCATGGACCACAGGGATGTCGTTAAAT
ACCTCTTGAAGGTGACTGAGATGTGGTCCTTTGGATGGCCATGGTAAAGA
GTTGTGGACATGTGCTCTAGTTGCCAACTAGCTGAGCCCTTGTGGACAAT
GTCCAGTGCTCCGTCTACTGCTGGAGATTCTGTTCTGTTCAATGTGTTAC
ACAATATGAGGGGGGTGCTGTAAGTTACGGAACTTGGTCCGTGTAGTCCA
CCGACGCCTATGTGGCTTGCGCTGTTGTTTAGATTTTCGTTCCAATTGAG
TACGACGGAGTACCCGTTAGTGTATTTTTGGAACGCGGCGTTCTGCGGAA
TCAAGTTGACAGCGCCGCTGTTCGGTTGCCTACCTACGGCTTGGAGTTAT
TTTCCAGAACCCATTCTCTACTCTCGGGTAAATTTGATGGACTTGATGTA
CTCTAGTTTTGGACGTACCCTTTCGTATAGTACACCGTAGTAATCAGTAA
TACTATGATACATACCATCATACACAGGAGAGTGCTGAGGTGGACGCGAA
AACGACTACGGGGGTGACCGCGCTGTGGCTAGCGGCAGGGGAGGGGAGGA
AGGAAGTTGCTGCGAGTCTCCTCGCACGGGGCGCTGACGTGAACAACCGA
CGAACAGACGGGATAACCGCCGTGATGGCAGCTGCTGTTGGAGGACACAA
GGTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4624:339..7945-

>mRNA_H-paniculata_contig4624.11555.1 ID=mRNA_H-paniculata_contig4624.11555.1|Name=mRNA_H-paniculata_contig4624.11555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2508bp|location=Sequence derived from alignment at H-paniculata_contig4624:339..7945- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCACACCACATTGCTGTACAACCTCACTCCACAGGTTCCCTCGGTGAC
ACCTTGTAGTTATCTAGTACGGGATCTAGCACCGGTTAAGCCGGTCGATT
CTCCGCTTCGAATGCAAAATACCCAGCGGCGACCCAAGATCAAGTGGGGA
GCGATGCGACGAGCGAAAACCCTGTCTGTTCTAGCCCTTACCGTAGGTAC
CAAGGCGGCTGACCAAGCTTCCACAGCGGCAGGAGCCAGTGGGAATACAA
ACGAGACTAACGCTGCAGGTGGCTTGTTGGAGAGTCGAGAAACACAGCCA
TTCTTCATACAGGACCCCGCCGATGGCCTTTGTCTCAGCGGAAGTACATT
CAAGCGCTGCGCAGTAGATACACTTTGGCGCGTGGAGGGGGAACCGGGGC
ACCTCTCCGTGCGACACATGGCTGTTCAAGAAGATGTTCCACACCACATT
GCTGTACAACCTCACTCCACAGGTTCCCTCGGTGACACCTTGTAGTTATC
TAGTACGGGATCTAGCACCGGTTAAGCCGGTCGATTCTCCGCTTCGAATG
CAAAATACCCAGCGGCGACCCAAGATCAAGTGGGGAGCGATGCGACGAGC
GAAAACCCTGTCTGTTCTAGCCCTTACCGTAGGTACCAAGGCGGCTGACC
AAGCTTCCACAGCGGCAGGAGCCAGTGGGAATACAAACGAGACTAACGCT
GCAGGTGGCTTGTTGGAGAGTCGAGAAACACAGCCATTCTTCATACAGGA
CCCCGCCGATGGCCTTTGTCTCAGCGGAAGTACATTCAAGCGCTGCGCAG
TAGATACACTTTGGCGCGTGGAGGGGGAACCGGGGCACCTCTCCGTGCGA
CACATGGCTGTTCAAGAAGATGGGGAGGAAGACGCCAAACAGCCGTGTTT
GGATCGCAAGAGCTGCGACTCGCCCACATCTCCGCTACGTACGTCCAGCT
GTGAACACTGCGGGGCTAAGGGATGGAATCTTCTAGGGGGAGGAAGACGC
CAAACAGCCGTGTTTGGATCGCAAGAGCTGCGACTCGCCCACATCTCCGC
TACGTACGTCCAGCTGTGAACACTGCGGGGCTAAGGGATGGAATCTTCTA
GGGGATGCGGATGCAGGATACACCTTATCAGTAGGGCCAGGCCAGCCAGC
AGCCGTAGCAGCGGCAGCGGCAGCGTCTGGGGGTATGGCGTTACCCGCGG
CCTTTGAGGCGGCTGCAGCGGCTGGGGCCGGTGCTGGCGGGTCGGGTGGT
CTATTGTGTATTATACGGGAAGGGGAAGTGGCGAAAATGGGAGGTTGTGG
CGAGCAGGCGACGTTGACGTTACAGGGATGCGGATGCAGGATACACCTTA
TCAGTAGGGCCAGGCCAGCCAGCAGCCGTAGCAGCGGCAGCGGCAGCGTC
TGGGGGTATGGCGTTACCCGCGGCCTTTGAGGCGGCTGCAGCGGCTGGGG
CCGGTGCTGGCGGGTCGGGTGGTCTATTGTGTATTATACGGGAAGGGGAA
GTGGCGAAAATGGGAGGTTGTGGCGAGCAGGCGACGTTGACGTTACAGTT
TGCGAGTGAAGACGACATGGCGGCGATGGGAGCGCCAGGGGTACGACTGA
TCACAGCCGCGAGCGATGGGGACAAGAAGGGGGTTAAGAGATGGCTGGAT
CAAGGGGTGGACGTGGACTCGAGGGATTGGGACAATTTAACACCTCTGAT
TGCGGCATCTAGCCAAGGACATTTGTTTGCGAGTGAAGACGACATGGCGG
CGATGGGAGCGCCAGGGGTACGACTGATCACAGCCGCGAGCGATGGGGAC
AAGAAGGGGGTTAAGAGATGGCTGGATCAAGGGGTGGACGTGGACTCGAG
GGATTGGGACAATTTAACACCTCTGATTGCGGCATCTAGCCAAGGACATT
TGGATGTCGTGAAAATTCTTCTGCAACGGGGGGCGGGAGTGAATTCGAAG
GACAAGGACAACATCACTGCTCTCATGGAGGCGTCTATCATGGACCACAG
GGATGTCGTTAAATACCTCTTGAAGGATGTCGTGAAAATTCTTCTGCAAC
GGGGGGCGGGAGTGAATTCGAAGGACAAGGACAACATCACTGCTCTCATG
GAGGCGTCTATCATGGACCACAGGGATGTCGTTAAATACCTCTTGAAGGA
GAGTGCTGAGGTGGACGCGAAAACGACTACGGGGGTGACCGCGCTGTGGC
TAGCGGCAGGGGAGGGGAGGAAGGAAGTTGCTGCGAGTCTCCTCGCACGG
GGCGCTGACGTGAACAACCGACGAACAGACGGGATAACCGCCGTGATGGC
AGCTGCTGTTGGAGGACACAAGGTGTAGGAGAGTGCTGAGGTGGACGCGA
AAACGACTACGGGGGTGACCGCGCTGTGGCTAGCGGCAGGGGAGGGGAGG
AAGGAAGTTGCTGCGAGTCTCCTCGCACGGGGCGCTGACGTGAACAACCG
ACGAACAGACGGGATAACCGCCGTGATGGCAGCTGCTGTTGGAGGACACA
AGGTGTAG
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