mRNA_H-paniculata_contig46229.11551.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46229.11551.1
Unique NamemRNA_H-paniculata_contig46229.11551.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig46229.11551.1 vs. uniprot
Match: D8LI29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI29_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 5.010e-28
Identity = 57/72 (79.17%), Postives = 64/72 (88.89%), Query Frame = 1 
Query:    4 EAELSLAEELRSFLRGHATALDRPTTMALLSSHGRGEEALFYATLVEDYERVLAHHASNGPDHTAALQVLRK 219
            EAE SLAEEL+SFLR +++ALD  TTM LLS HGRGEEALFYATLVEDY+RVLAHH S+GPDH AAL+VLRK
Sbjct:  396 EAENSLAEELKSFLREYSSALDPATTMNLLSKHGRGEEALFYATLVEDYDRVLAHHTSHGPDHKAALEVLRK 467
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BLAST of mRNA_H-paniculata_contig46229.11551.1 vs. uniprot
Match: A0A6H5KQH0_9PHAE (Pep3_Vps18 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH0_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.280e-27
Identity = 56/72 (77.78%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    4 EAELSLAEELRSFLRGHATALDRPTTMALLSSHGRGEEALFYATLVEDYERVLAHHASNGPDHTAALQVLRK 219
            EAE  LAEEL+SFLR +++ALD  TTM LLS HGRGEEALFYATLVEDY+RVLAHH S+GPDH AAL+VLRK
Sbjct:  786 EAENCLAEELKSFLRDYSSALDPATTMNLLSKHGRGEEALFYATLVEDYDRVLAHHTSHGPDHNAALEVLRK 857
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BLAST of mRNA_H-paniculata_contig46229.11551.1 vs. uniprot
Match: A0A3M6V9P5_9STRA (Pep3_Vps18 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V9P5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.320e-12
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    1 VEAELSLAEELRSFLRGHATALDRPTTMALLSSHGRGEEALFYATLVEDYERVLAHHASNGPDHTAALQVLRKV 222
            V+A  +L  E + FL+   + LD  TT  L+SSHGR +E +FYATL+EDYE+V+ +H   G ++ AA+++LR V
Sbjct:  571 VDAHANLLFEFKQFLQDQKSHLDPATTFNLISSHGRPDELMFYATLIEDYEKVITYHVDRG-EYGAAIELLRSV 643
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BLAST of mRNA_H-paniculata_contig46229.11551.1 vs. uniprot
Match: W2PDC3_PHYPN (Pep3_Vps18 domain-containing protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PDC3_PHYPN)

HSP 1 Score: 70.5 bits (171), Expect = 1.810e-12
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    1 VEAELSLAEELRSFLRGHATALDRPTTMALLSSHGRGEEALFYATLVEDYERVLAHHASNGPDHTAALQVLRKV 222
            V+A  +L  E + FL+   + LD  TT  L+SSHGR +E +FYATL+EDYE+V+ +H   G ++ AA+++LR V
Sbjct:  686 VDAHANLLFEFKQFLQDQKSHLDPATTFNLISSHGRPDELVFYATLIEDYEKVITYHVDRG-EYGAAIELLRSV 758
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BLAST of mRNA_H-paniculata_contig46229.11551.1 vs. uniprot
Match: A0A484DZP8_BRELC (Pep3_Vps18 domain-containing protein n=13 Tax=Peronosporaceae TaxID=4777 RepID=A0A484DZP8_BRELC)

HSP 1 Score: 70.5 bits (171), Expect = 1.810e-12
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    1 VEAELSLAEELRSFLRGHATALDRPTTMALLSSHGRGEEALFYATLVEDYERVLAHHASNGPDHTAALQVLRKV 222
            V+A  +L  E + FL+   + LD  TT  L+SSHGR +E +FYATL+EDYE+V+ +H   G ++ AA+++LR V
Sbjct:  555 VDAHANLLFEFKQFLQDQKSHLDPATTFNLISSHGRPDELVFYATLIEDYEKVITYHVDRG-EYGAAIELLRSV 627
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BLAST of mRNA_H-paniculata_contig46229.11551.1 vs. uniprot
Match: H3GBZ0_PHYRM (Pep3_Vps18 domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=H3GBZ0_PHYRM)

HSP 1 Score: 70.5 bits (171), Expect = 1.810e-12
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    1 VEAELSLAEELRSFLRGHATALDRPTTMALLSSHGRGEEALFYATLVEDYERVLAHHASNGPDHTAALQVLRKV 222
            V+A  +L  E + FL+   + LD  TT  L+SSHGR +E +FYATL+EDYE+V+ +H   G ++ AA+++LR V
Sbjct:  562 VDAHANLLFEFKQFLQDQKSHLDPATTFNLISSHGRPDELVFYATLIEDYEKVITYHVDRG-EYGAAIELLRSV 634
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BLAST of mRNA_H-paniculata_contig46229.11551.1 vs. uniprot
Match: M4BA01_HYAAE (Pep3_Vps18 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BA01_HYAAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.810e-12
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    1 VEAELSLAEELRSFLRGHATALDRPTTMALLSSHGRGEEALFYATLVEDYERVLAHHASNGPDHTAALQVLRKV 222
            V+A  +L  E + FL+   + LD  TT  L+SSHGR +E +FYATL+EDYE+V+ +H   G ++ AA+++LR V
Sbjct:  444 VDAHANLMFEFKQFLQDQKSHLDPATTFNLISSHGRPDELVFYATLIEDYEKVITYHVDRG-EYGAAIELLRSV 516
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BLAST of mRNA_H-paniculata_contig46229.11551.1 vs. uniprot
Match: M4BGV5_HYAAE (Pep3_Vps18 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BGV5_HYAAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.810e-12
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    1 VEAELSLAEELRSFLRGHATALDRPTTMALLSSHGRGEEALFYATLVEDYERVLAHHASNGPDHTAALQVLRKV 222
            V+A  +L  E + FL+   + LD  TT  L+SSHGR +E +FYATL+EDYE+V+ +H   G ++ AA+++LR V
Sbjct:  564 VDAHANLLFEFKQFLQDQKSHLDPATTFNLISSHGRPDELVFYATLIEDYEKVITYHVDRG-EYGAAIELLRSV 636
[Close]
BLAST of mRNA_H-paniculata_contig46229.11551.1 vs. uniprot
Match: A0A2D4BLX9_PYTIN (Pep3_Vps18 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLX9_PYTIN)

HSP 1 Score: 69.7 bits (169), Expect = 3.370e-12
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    1 VEAELSLAEELRSFLRGHATALDRPTTMALLSSHGRGEEALFYATLVEDYERVLAHHASNGPDHTAALQVLRKV 222
            V+A  +L  E + FL+   T LD  TT  L+SSHGR +E +F+ATL+EDYE+V+ +H   G ++ AA+++LR V
Sbjct:  452 VDAHANLLFEFKQFLQDQKTHLDPATTFNLISSHGRTDELVFFATLIEDYEKVVTYHVHRG-EYGAAIELLRSV 524
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BLAST of mRNA_H-paniculata_contig46229.11551.1 vs. uniprot
Match: F0W1U5_9STRA (Vacuolar protein sortingassociated protein 18 putat n=2 Tax=Albugo TaxID=65356 RepID=F0W1U5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.380e-12
Identity = 33/74 (44.59%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:    1 VEAELSLAEELRSFLRGHATALDRPTTMALLSSHGRGEEALFYATLVEDYERVLAHHASNGPDHTAALQVLRKV 222
            V+A  +L  E + FL+     LD  TT  L++SHGR +E +FYATL+EDYE+V+ +H   G D++ A+++LR V
Sbjct:  569 VDAHANLLFEFKQFLQDQKQHLDPATTFQLIASHGRPDELVFYATLIEDYEKVVTYHIHRG-DYSGAIEILRSV 641
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46229.11551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI29_ECTSI5.010e-2879.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQH0_9PHAE1.280e-2777.78Pep3_Vps18 domain-containing protein n=1 Tax=Ectoc... [more]
A0A3M6V9P5_9STRA1.320e-1245.95Pep3_Vps18 domain-containing protein n=1 Tax=Peron... [more]
W2PDC3_PHYPN1.810e-1245.95Pep3_Vps18 domain-containing protein n=1 Tax=Phyto... [more]
A0A484DZP8_BRELC1.810e-1245.95Pep3_Vps18 domain-containing protein n=13 Tax=Pero... [more]
H3GBZ0_PHYRM1.810e-1245.95Pep3_Vps18 domain-containing protein n=14 Tax=Phyt... [more]
M4BA01_HYAAE1.810e-1245.95Pep3_Vps18 domain-containing protein n=1 Tax=Hyalo... [more]
M4BGV5_HYAAE1.810e-1245.95Pep3_Vps18 domain-containing protein n=1 Tax=Hyalo... [more]
A0A2D4BLX9_PYTIN3.370e-1245.95Pep3_Vps18 domain-containing protein n=1 Tax=Pythi... [more]
F0W1U5_9STRA3.380e-1244.59Vacuolar protein sortingassociated protein 18 puta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46229contigH-paniculata_contig46229:385..606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.4
Seed ortholog evalue2.3e-23
Seed eggNOG ortholog2880.D8LI29
Preferred nameVPS18
KEGG koko:K20181
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000149,GO:0000323,GO:0001667,GO:0002064,GO:0002065,GO:0002066,GO:0002791,GO:0002793,GO:0003006,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005856,GO:0005884,GO:0006605,GO:0006622,GO:0006623,GO:0006725,GO:0006726,GO:0006727,GO:0006728,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006887,GO:0006897,GO:0006904,GO:0006914,GO:0006928,GO:0006950,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007154,GO:0007220,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007568,GO:0007610,GO:0007632,GO:0007634,GO:0008055,GO:0008057,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008333,GO:0008340,GO:0008593,GO:0009056,GO:0009058,GO:0009267,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009790,GO:0009888,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010256,GO:0010259,GO:0010631,GO:0010646,GO:0010647,GO:0010648,GO:0010876,GO:0012505,GO:0015031,GO:0015629,GO:0015711,GO:0015718,GO:0015721,GO:0015833,GO:0015849,GO:0015850,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016477,GO:0016482,GO:0018130,GO:0019058,GO:0019438,GO:0019538,GO:0019748,GO:0019889,GO:0019905,GO:0019953,GO:0021700,GO:0022406,GO:0022411,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0023057,GO:0030154,GO:0030260,GO:0030674,GO:0030707,GO:0030855,GO:0030897,GO:0030903,GO:0031338,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033059,GO:0033060,GO:0033263,GO:0033365,GO:0033554,GO:0034613,GO:0034641,GO:0035542,GO:0040011,GO:0042440,GO:0042441,GO:0042558,GO:0042559,GO:0042594,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043324,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043933,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044409,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044703,GO:0045022,GO:0045176,GO:0045184,GO:0045202,GO:0045746,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046718,GO:0046872,GO:0046903,GO:0046907,GO:0046914,GO:0046942,GO:0048066,GO:0048069,GO:0048072,GO:0048278,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048583,GO:0048585,GO:0048609,GO:0048731,GO:0048753,GO:0048757,GO:0048856,GO:0048869,GO:0048870,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050896,GO:0050931,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051128,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051301,GO:0051640,GO:0051641,GO:0051649,GO:0051674,GO:0051701,GO:0051704,GO:0051716,GO:0051806,GO:0051828,GO:0060034,GO:0060035,GO:0060036,GO:0060090,GO:0060429,GO:0060627,GO:0061356,GO:0061357,GO:0061462,GO:0061919,GO:0065007,GO:0070201,GO:0070727,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0090087,GO:0090130,GO:0090132,GO:0097352,GO:0097708,GO:0098657,GO:0098796,GO:0098927,GO:0099023,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140029,GO:0140056,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1903530,GO:1903532,GO:1904951
EggNOG free text desc.notochord cell vacuolation
EggNOG OGsKOG2034@1,KOG2034@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930381.5515945-CDS-H-paniculata_contig46229:384..6061622930381.5515945-CDS-H-paniculata_contig46229:384..606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46229 385..606 +
1691481266.1631641-CDS-H-paniculata_contig46229:384..6061691481266.1631641-CDS-H-paniculata_contig46229:384..606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46229 385..606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46229.11551.1prot_H-paniculata_contig46229.11551.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46229 385..606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46229.11551.1

>prot_H-paniculata_contig46229.11551.1 ID=prot_H-paniculata_contig46229.11551.1|Name=mRNA_H-paniculata_contig46229.11551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
VEAELSLAEELRSFLRGHATALDRPTTMALLSSHGRGEEALFYATLVEDY
ERVLAHHASNGPDHTAALQVLRKV
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mRNA from alignment at H-paniculata_contig46229:385..606+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46229.11551.1 ID=mRNA_H-paniculata_contig46229.11551.1|Name=mRNA_H-paniculata_contig46229.11551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig46229:385..606+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGAGGCGGAGCTCTCCCTGGCGGAGGAACTGCGGTCGTTTTTGCGCGG
GCACGCCACGGCGCTAGACCGCCCCACGACGATGGCGTTGCTCTCGTCAC
ACGGCCGTGGGGAGGAAGCGTTATTCTACGCAACCCTTGTAGAGGACTAC
GAACGAGTCCTGGCGCACCATGCCAGTAACGGTCCGGATCACACGGCGGC
TCTTCAAGTTTTAAGGAAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig46229:385..606+

>mRNA_H-paniculata_contig46229.11551.1 ID=mRNA_H-paniculata_contig46229.11551.1|Name=mRNA_H-paniculata_contig46229.11551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig46229:385..606+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGAGGCGGAGCTCTCCCTGGCGGAGGAACTGCGGTCGTTTTTGCGCGG
GCACGCCACGGCGCTAGACCGCCCCACGACGATGGCGTTGCTCTCGTCAC
ACGGCCGTGGGGAGGAAGCGTTATTCTACGCAACCCTTGTAGAGGACTAC
GAACGAGTCCTGGCGCACCATGCCAGTAACGGTCCGGATCACACGGCGGC
TCTTCAAGTTTTAAGGAAGGTGGTAGAGGCGGAGCTCTCCCTGGCGGAGG
AACTGCGGTCGTTTTTGCGCGGGCACGCCACGGCGCTAGACCGCCCCACG
ACGATGGCGTTGCTCTCGTCACACGGCCGTGGGGAGGAAGCGTTATTCTA
CGCAACCCTTGTAGAGGACTACGAACGAGTCCTGGCGCACCATGCCAGTA
ACGGTCCGGATCACACGGCGGCTCTTCAAGTTTTAAGGAAGGTG
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