prot_H-paniculata_contig46224.11550.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig46224.11550.1
Unique Nameprot_H-paniculata_contig46224.11550.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length277
Homology
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 229 bits (584), Expect = 4.870e-65
Identity = 103/162 (63.58%), Postives = 132/162 (81.48%), Query Frame = 0
Query:    1 VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGST 162
            VIGTRWV++VK DG+FKAR+VVQGW+Q+HGIDC +TFAPVC + +QRLLL +A A+GW V A+DVQ  FL+GKL E V+  QAP F+K +SSTG+P V   K+ +YG RQSP+VWN TID +LR  GFTPT SDPCVY+KGS ++YIM +LF+DD+L+T +T
Sbjct:  690 VIGTRWVYRVKTDGRFKARVVVQGWAQQHGIDCFTTFAPVCKIGSQRLLLAIAAAQGWPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLYGLRQSPSVWNLTIDKDLRGKGFTPTASDPCVYTKGSGNSYIMLTLFVDDILLTVAT 851          
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 5.410e-64
Identity = 112/286 (39.16%), Postives = 170/286 (59.44%), Query Frame = 0
Query:    2 IGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIE---------VSQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQRHL 275
            IG+RW++K+KA G  KARL+VQGW Q+HGIDCG T+APV    +Q +L+ +A  +G+ V  +DV   FL   ++E V+ +QA  ++ TD  TG P VM  K+ +YG +QSP  + +     ++ +GFT  +SDPCVY  G+  TY +  +++DD  + G T  ++ D++ QL   F +TD G   L+LG+E         VSQHKY ++ILD++ M    P  TPG   +      +   L     K YQ +V S +FLT  TR++I ++V+   R M+ PT +H+
Sbjct:  937 IGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTYAILCVYVDDCTLAGKTPSVVQDLKKQLSDKFKMTDGGPAELLLGMEISQSDGEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHM 1222          
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 1.030e-58
Identity = 108/289 (37.37%), Postives = 167/289 (57.79%), Query Frame = 0
Query:    1 VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQRHL 275
            ++GT++VFK K DG+FKA LVV G  Q+ G D GS++APVC + + R+   +     W +Y LDV V FL+      V+ + AP     +S+TG+P V   +R +YG  QSP +WN T++  L+  G+  T  DPCVY   S +  ++ ++++DD+L+TG  D+ L+D + +L   F +TD+GEV  ILGI+V           SQ  Y  ++L+RF M  ANP  T G   + +       +L     K YQ++  S ++L QCTRFD+ ++ +Q ++  S P Q +L
Sbjct:  125 ILGTKFVFKKKLDGRFKAHLVVGGHRQEPGQDYGSSYAPVCRIGSIRMTCTIGCHNNWPIYQLDVVVAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITGG-DQQLVDQKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNL 412          
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 2.420e-58
Identity = 111/288 (38.54%), Postives = 165/288 (57.29%), Query Frame = 0
Query:    2 IGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQRHL 275
            I ++WVFK KA G FK RLV QGW+Q  G+DCG+T+APVC  ++ R+L  +A      +  +DV   FL   + E+VF +Q P F+  D   G   VM  ++ +YG  QSP+ W HTID  L  +GF P  SD CVY    +D  +  +L++DDLL+ G+  + +  ++ +L   F +TD+GEV L+LG+E+           SQ  Y+ SIL+RF MS   PT TPG  ++ +       LL    T+ YQ +V   I++ Q  R+DI ++  Q  R M+ P++ H+
Sbjct:  506 IKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGD-LVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLSEEETRRYQGIVGCLIYIAQVLRYDIMYATGQLTRPMAKPSKIHM 792          
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 5.180e-58
Identity = 107/286 (37.41%), Postives = 163/286 (56.99%), Query Frame = 0
Query:    1 VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQ 272
            ++GT++VFK K DG+FKARLVV G  Q+ G D G ++APVC + + R+   +     W +Y LDV   FL+      V+ + AP     +S+TG+P V   +R +YG  QSP +WN T+D  L   G+  T SDPCVY   S +  ++ ++++DD+L+TG   +L+   + +L   F +TD+GEV  ILGI+V           SQ  Y  ++L+RF M  ANP  TPG   + +       +L     K YQ++  S ++L QCTRFD+ ++ +Q ++  S P Q
Sbjct:  388 ILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQ 673          
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.200e-57
Identity = 113/288 (39.24%), Postives = 165/288 (57.29%), Query Frame = 0
Query:    2 IGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQRHL 275
            I ++WVFK KADG FK R+V QGW+Q  G+DCGST+APVC +++ R++  +          +DV   FL   ++E VF +Q P F+  D   G   VM   + +YG  QSP  W +TID  L  +GF    SDPCVY    N   I  +L++DDLL+ G+    +  V+ +L   F +TDLGE SL+LG+E+           SQ  Y  SIL+RF +S + PT TPG  ++ +       LLD   T++YQ +V S +++ Q  R+DI ++  Q AR M+ P++ H+
Sbjct: 1198 IKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGD-MVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHM 1484          
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 2.540e-57
Identity = 105/286 (36.71%), Postives = 161/286 (56.29%), Query Frame = 0
Query:    1 VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQ 272
            ++GT++VFK K DG+FKARLVV G  Q+ G D G ++APVC + + R+   +     W +Y LDV   FL+      V+ + AP     +S+TG+P V   +R +YG  QSP +WN T+D  L   G+  T SDPCVY   S +  ++ ++++DD+L+TG   +L+   + +L   F +TD+GEV  ILGI+V           SQ  Y  + L+RF M  ANP  T G   + +       +L     K YQ++  S ++L QCT+FD+ ++ +Q ++  S P Q
Sbjct:   24 ILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQ 309          
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 2.650e-57
Identity = 116/288 (40.28%), Postives = 164/288 (56.94%), Query Frame = 0
Query:    1 VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQRH 274
            V+GTR+VFK KAD +FK RLVVQG  Q+ GID G  +A VC + + R+   +A  +GW V+ +DV V FL   + + V+ K AP     D +TG   V   +R +YG  QSP +W  TID  L  +GF PT SDPCVY  GS DT ++ +L+++D+L++G    L+ D++ +L   F ITD+GEV LILG++V           SQ  Y  SIL+   M + NP               +  LL AA +K YQ++  S ++L QC R+D  ++V Q  R  S P + H
Sbjct:  426 VLGTRFVFKQKADERFKVRLVVQGHVQESGIDDGRRYARVCRIGSVRIFFAIACERGWPVWQMDVAVAFLQPTIDKDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCNPP--------------ADELLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRACSKPARAH 699          
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KG29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG29_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 2.180e-56
Identity = 105/296 (35.47%), Postives = 161/296 (54.39%), Query Frame = 0
Query:    1 VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPS----------FKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEV-----------SQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQ 272
            ++GT++VFK K +G+FKARLVV G  Q+ G D G ++APVC + + R+         W +Y LDV   FL+      V+ + AP               +S+TG+P V   +R +YG  QSP + N T+D  L   G+  T SDPCVY   S +  ++ ++++DD+L+TG   +L+   + +L   F +TD+GEV  ILGI+V           SQ  Y  ++L+RF M  ANP  TPG   + +       +L     K YQ++  S ++L QCTRFD+ ++ +Q ++  S P Q
Sbjct:   24 ILGTKFVFKKKLEGRFKARLVVGGHRQEPGQDYGHSYAPVCRIGSIRMTCATGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTXXXXXXXXXXSAKNSATGEPMVYKLERSLYGLSQSPALLNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDNKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQ 319          
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 6.920e-56
Identity = 106/277 (38.27%), Postives = 158/277 (57.04%), Query Frame = 0
Query:    2 IGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLLVLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMSSKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPSLFIDDLLVTGSTDKLLMDVRNQL---FTITDLGEVSLILGIEVSQHKYALSILDRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQCTRFDICFSVIQAARFMSAPTQRHL 275
            I ++WVFK KADG FK RLVVQGW+Q  G+D GSTFAPVC L++ R+L   A      +  +DV   FL   + E+VF +Q P F+  +   G   VM  ++ +YG  QSP+ W HTID  L  +GF P  SD C+Y    +D  +  +L++DDLL+ G     +  ++ +L   F +TD+G V L+LG+E+ + +      +RF MS   PT TPG  ++ +       LL    T  YQ +V   +++ Q  R+DI ++  Q AR M+ P++ H+
Sbjct:   97 IKSKWVFKRKADGSFKGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKNKDGGD-LVMQLQKSLYGLAQSPSNWFHTIDPLLVEIGFVPLKSDTCIYLYDHDDVQVYLTLYVDDLLLAGDNSNAISTIKKKLKQRFNMTDMGGVKLVLGMEIKRDRNQ----ERFGMSECKPTSTPGYGSELSKKQPEDTLLGEEETGRYQDIVGCLMYIAQVLRYDIMYATGQLARPMAKPSKIHM 368          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46224.11550.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAG6_9PHAE4.870e-6563.58Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KY84_9PHAE5.410e-6439.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JDU8_9PHAE1.030e-5837.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE2.420e-5838.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KE92_9PHAE5.180e-5837.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE1.200e-5739.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQD0_9PHAE2.540e-5736.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9R3_9PHAE2.650e-5740.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KG29_9PHAE2.180e-5635.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KWT4_9PHAE6.920e-5638.27Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..214
e-value: 3.6E-50
score: 170.9
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..143
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 1..143
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 17..196

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46224contigH-paniculata_contig46224:47..1157 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46224.11550.1mRNA_H-paniculata_contig46224.11550.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig46224 47..1157 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig46224.11550.1 ID=prot_H-paniculata_contig46224.11550.1|Name=mRNA_H-paniculata_contig46224.11550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp
VIGTRWVFKVKADGKFKARLVVQGWSQKHGIDCGSTFAPVCTLENQRLLL
VLATAKGWTVYALDVQVTFLDGKLKESVFCKQAPSFKKTDSSTGQPYVMS
SKRLIYGFRQSPNVWNHTIDNELRSMGFTPTISDPCVYSKGSNDTYIMPS
LFIDDLLVTGSTDKLLMDVRNQLFTITDLGEVSLILGIEVSQHKYALSIL
DRFNMSSANPTKTPGIKTDPNAAGNSGNLLDAAATKEYQTLVASFIFLTQ
CTRFDICFSVIQAARFMSAPTQRHLC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like