mRNA_H-paniculata_contig4622.11547.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4622.11547.1 vs. uniprot
Match: A0A6H5L4A4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A4_9PHAE) HSP 1 Score: 135 bits (339), Expect = 2.100e-33 Identity = 76/232 (32.76%), Postives = 123/232 (53.02%), Query Frame = 2
Query: 2 DGKVMLGTKRLYSREIEEHGEVGKYKCRSVAQGFRQIKRLHYEGSSFPTPAAASIRMALATGAMMDMGIRHFDFNQAYLLADIDTEMYVDLPEEYREFPGAVGWLNNAIYRPVQAGRCWNVKLTEDLKTLGSE*SNADPCMFRKFFTGELVTILVVHVDDLLALTTTKEAMEVFVGDLCSK*KIKDLGKASYYMGCHITRNREKKELKLDEHLYAQTITDHFEINLTAMTPA 697
+G+ +G+K ++S + E G + +K R +A+GF QI + + S P+AASI+ +A M + H+D QAY+ A + E + PE Y G V + A+Y Q+GR W + L G E DPC+FRK GE+V+++V++VDD+L + E E+F L K ++ LG+ ++Y GC I + E KL + Y +++ F++ TA T A
Sbjct: 22 EGRKAIGSKWVFSWKTNEKGLIVDFKSRMIARGFSQIPGIDFHHSFSACPSAASIKTVIAVATEMGKKLAHWDVKQAYIHAKLKEETCLRFPEGYGNMSGKVVKVERALYGLKQSGREWGFEAAGALIENGYEQCRVDPCVFRKVVDGEVVSLIVIYVDDILVVADEGEREELFAS-LNKKFPVESLGEYTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTLA 252
BLAST of mRNA_H-paniculata_contig4622.11547.1 vs. uniprot
Match: O23588_ARATH (Retrotransposon like protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=O23588_ARATH) HSP 1 Score: 126 bits (317), Expect = 1.120e-29 Identity = 70/207 (33.82%), Postives = 116/207 (56.04%), Query Frame = 2
Query: 8 KVMLGTKRLYSREIEEHGEVGKYKCRSVAQGFRQIKRLHYEGSSFPTPAAASIRMALATGAMMDMGIRHFDFNQAYLLADIDTEMYVDLPEEYREF------PGAVGWLNNAIYRPVQAGRCWNVKLTEDLKTLGSE*SNADPCMFRKFFTGELVTILVVHVDDLLALTTTKEAMEVFVGDLCSK*KIKDLGKASYYMGCHITRNRE 610
K +G K +++ + G + +YK R VA+G+ Q + L YE + P S+RM L A M + D + A+L D+D E+Y+ +P Y + P A+ L+ +IY QA R W +KL+ LK +G + SNAD +F K+ G L+ +L V+VDD++ ++ + +A+ F +L S K++DLG A Y++G I R+ +
Sbjct: 955 KKAIGCKWVFTIKHNADGSIERYKARLVAKGYTQEEGLDYEETFSPVAKLTSVRMMLLLAAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPGYADLVGEALPPHAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANGVLMGVL-VYVDDIMIVSNSDDAVAQFTAELKSYFKLRDLGAAKYFLGIEIARSEK 1160
BLAST of mRNA_H-paniculata_contig4622.11547.1 vs. uniprot
Match: A0A5N6LS40_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LS40_9ASTR) HSP 1 Score: 123 bits (308), Expect = 1.700e-28 Identity = 70/223 (31.39%), Postives = 118/223 (52.91%), Query Frame = 2
Query: 5 GKVMLGTKRLYSREIEEHGEVGKYKCRSVAQGFRQIKRLHYEGSSFPTPAAASIRMALATGAMMDMGIRHFDFNQAYLLADIDTEMYVDLPEEYRE--FPGAVGWLNNAIYRPVQAGRCWNVKLTEDLKTLGSE*SNADPCMFRKFFTGELVTILVVHVDDLLALTTTKEAMEVFVGDLCSK*KIKDLGKASYYMGCHITRNREKKELKLDEHLYAQTITDHF 667
G +G+K ++ R+ + HG V YK R VA+GF Q + + Y+ + P SIR+ LA A D I D A+L + ++Y+ P+ + + +P V LN +IY QA RCWN++ + +K G + +PC++RK +G ++ L+++VDD+L + + L + +KDLG+A+Y +G I R+R K+ L L + Y + F
Sbjct: 786 GSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPSKVYKLNKSIYGLKQASRCWNLRFDQKIKEFGFIKNEDEPCVYRKA-SGSTISFLILYVDDILIIGNNIPMLNEVKNWLGTCFAMKDLGEAAYILGIKIHRDRSKRLLGLSQSTYIDKMMTRF 1007
BLAST of mRNA_H-paniculata_contig4622.11547.1 vs. uniprot
Match: Q9MAJ8_ARATH (F27F5.19 n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9MAJ8_ARATH) HSP 1 Score: 123 bits (308), Expect = 1.760e-28 Identity = 71/205 (34.63%), Postives = 113/205 (55.12%), Query Frame = 2
Query: 8 KVMLGTKRLYSREIEEHGEVGKYKCRSVAQGFRQIKRLHYEGSSFPTPAAASIRMALATGAMMDMGIRHFDFNQAYLLADIDTEMYVDLPEEYREF------PGAVGWLNNAIYRPVQAGRCWNVKLTEDLKTLGSE*SNADPCMFRKFFTGELVTILVVHVDDLLALTTTKEAMEVFVGDLCSK*KIKDLGKASYYMGCHITRN 604
K +G K +++ + G + +YK R VA+G+ Q + L YE + P S+RM L A M + D + A+L D+D E+Y+ +P Y + P AV L+ +IY QA R W +KL+ LK +G + SNAD +F KF +G L+ +L V+VDD++ ++ + A+ F +L S K++DL A Y+ G I R+
Sbjct: 908 KKAIGCKWVFTIKHNADGSIERYKARLVAKGYTQEESLDYEETFSPVAKLTSVRMMLLLAAKMKWSVLQLDISNAFLNGDLDEEIYMKIPPGYADLIGESLPPHAVCRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKFASGVLMGVL-VYVDDIMIVSNSDNAVTQFTTELKSYFKLRDLSAAKYFFGIEIARS 1111
BLAST of mRNA_H-paniculata_contig4622.11547.1 vs. uniprot
Match: A0A5N6LW24_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LW24_9ASTR) HSP 1 Score: 122 bits (307), Expect = 2.280e-28 Identity = 70/223 (31.39%), Postives = 118/223 (52.91%), Query Frame = 2
Query: 5 GKVMLGTKRLYSREIEEHGEVGKYKCRSVAQGFRQIKRLHYEGSSFPTPAAASIRMALATGAMMDMGIRHFDFNQAYLLADIDTEMYVDLPEEYRE--FPGAVGWLNNAIYRPVQAGRCWNVKLTEDLKTLGSE*SNADPCMFRKFFTGELVTILVVHVDDLLALTTTKEAMEVFVGDLCSK*KIKDLGKASYYMGCHITRNREKKELKLDEHLYAQTITDHF 667
G +G+K ++ R+ + HG V YK R VA+GF Q + + Y+ + P SIR+ LA A D I D A+L + ++Y+ PE + + +P V LN +IY QA RCWN++ + +K G + +PC++RK +G ++ L+++VDD+L + + L + +KDLG+A+Y +G I R+R K+ L + + Y + F
Sbjct: 506 GSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPEGFVDPKYPNKVCKLNKSIYGLKQASRCWNLRFDQKIKEFGFIKNEDEPCVYRKA-SGRTISFLILYVDDILIIGNNIPMLNEVKHWLGNCFAMKDLGEAAYILGIKIHRDRSKRLLGMSQSAYIDKMMTRF 727
BLAST of mRNA_H-paniculata_contig4622.11547.1 vs. uniprot
Match: A0A5N6MMD4_9ASTR (Uncharacterized protein n=6 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MMD4_9ASTR) HSP 1 Score: 122 bits (306), Expect = 3.260e-28 Identity = 70/223 (31.39%), Postives = 118/223 (52.91%), Query Frame = 2
Query: 5 GKVMLGTKRLYSREIEEHGEVGKYKCRSVAQGFRQIKRLHYEGSSFPTPAAASIRMALATGAMMDMGIRHFDFNQAYLLADIDTEMYVDLPEEYRE--FPGAVGWLNNAIYRPVQAGRCWNVKLTEDLKTLGSE*SNADPCMFRKFFTGELVTILVVHVDDLLALTTTKEAMEVFVGDLCSK*KIKDLGKASYYMGCHITRNREKKELKLDEHLYAQTITDHF 667
G +G+K ++ R+ + HG V YK R VA+GF Q + + Y+ + P SIR+ LA A D I D A+L + ++Y+ P+ + + +P V LN +IY QA RCWN++ + +K G + +PC++RK +G ++ L+++VDD+L + + L + +KDLG+A+Y +G I R+R K+ L L + Y + F
Sbjct: 839 GSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRVLLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPSKVCKLNKSIYGLKQASRCWNLRFDQKIKEFGFIKNEDEPCVYRKA-SGSTISFLILYVDDILIIGNNIPMLNEVKHWLGTCFAMKDLGEAAYILGIKIHRDRSKRLLGLSQSTYIDKMMTRF 1060
BLAST of mRNA_H-paniculata_contig4622.11547.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE) HSP 1 Score: 121 bits (304), Expect = 4.080e-28 Identity = 70/217 (32.26%), Postives = 117/217 (53.92%), Query Frame = 2
Query: 17 LGTKRLYSREIEEHGEVGKYKCRSVAQGFRQIKRLHYEGSSFPTPAAASIRMALATGAMMDMGIRHFDFNQAYLLADIDTEMYVDLPEEYREFPGAVGWLNNAIYRPVQAGRCWNVKLTEDLKTLGSE*SNADPCMFRKFFTGELVTILVVHVDDLLALTTTKEAMEVFVGDLCSK*KIKDLGKASYYMGCHITRNREKKELKLDEHLYAQTITDHF 667
+ +K L+ +++ G K K R VA+G Q + + + PT A++S+RM A +D+ + HFD +QA++ A ++ +++ +PE G + LN ++Y QA R W L + L LG E AD C+FR GE+V +LVVHVDD+ A+ T KE + F DL +K LG+ +Y GC+ +RE + + + Y + + + +
Sbjct: 151 IKSKLLFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCLFRFVEGGEVVLLLVVHVDDIFAVGT-KERCDQFGKDLGEYVPVKSLGELKWYSGCYYEGDREAGRMTISQQTYTEELGERY 366
BLAST of mRNA_H-paniculata_contig4622.11547.1 vs. uniprot
Match: A0A251T958_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T958_HELAN) HSP 1 Score: 119 bits (298), Expect = 3.810e-27 Identity = 68/221 (30.77%), Postives = 119/221 (53.85%), Query Frame = 2
Query: 17 LGTKRLYSREIEEHGEVGKYKCRSVAQGFRQIKRLHYEGSSFPTPAAASIRMALATGAMMDMGIRHFDFNQAYLLADIDTEMYVDLPEEYRE--FPGAVGWLNNAIYRPVQAGRCWNVKLTEDLKTLGSE*SNADPCMFRKFFTGELVTILVVHVDDLLALTTTKEAMEVFVGDLCSK*KIKDLGKASYYMGCHITRNREKKELKLDEHLYAQTITDHFEI 673
+G+K ++ R+ + HG + YK R VA+GF Q + + Y+ + P SIR+ LA A D I D A+L + ++Y+ P+ + + +P V LN +IY QA R WN++ + +K G + +PC++RK +G ++ L+++VDD+L + ++ L S ++DLG+A+Y +G I RNR K+ L L + Y + F++
Sbjct: 844 VGSKWVFKRKTDMHGNIQTYKARLVAKGFTQTQGIDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPDGFIDPKYPNRVCKLNKSIYGLKQASRSWNLRFDQKVKEFGFVKNEDEPCVYRKA-SGSAISFLILYVDDILIIGNNIPMLKEIKHWLGSCFAMQDLGEAAYILGIKIYRNRSKRLLGLTQSTYIDQVMRRFKM 1063
BLAST of mRNA_H-paniculata_contig4622.11547.1 vs. uniprot
Match: A0A6H5KL18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL18_9PHAE) HSP 1 Score: 119 bits (297), Expect = 4.400e-27 Identity = 70/217 (32.26%), Postives = 113/217 (52.07%), Query Frame = 2
Query: 17 LGTKRLYSREIEEHGEVGKYKCRSVAQGFRQIKRLHYEGSSFPTPAAASIRMALATGAMMDMGIRHFDFNQAYLLADIDTEMYVDLPEEYREFPGAVGWLNNAIYRPVQAGRCWNVKLTEDLKTLGSE*SNADPCMFRKFFTGELVTILVVHVDDLLALTTTKEAMEVFVGDLCSK*KIKDLGKASYYMGCHITRNREKKELKLDEHLYAQTITDHF 667
+ +K ++ + G K K R VA+G Q + + + PT A+ S+RM A +D+ + HFD +QA++ A + + ++ LP+ G + LN ++Y QA R W L + L LG E AD C+FR G++V +LVVHVDD+ A+ T KE + F DL +K LG+ Y GC+ R+RE L + + Y + + + +
Sbjct: 328 IKSKLIFDWNVNAFGFPSKAKARLVARGDMQKEYIDFGDLYAPTVASYSVRMLAALACELDLELCHFDIDQAFVRAPLKEDNFMRLPDGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFRLVEGGDVVLLLVVHVDDIFAVGT-KERCDQFGKDLGEYVPVKSLGELKLYSGCYYERDREAGRLTISQQTYTEELGERY 543
BLAST of mRNA_H-paniculata_contig4622.11547.1 vs. uniprot
Match: A0A5N6LHI8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LHI8_9ASTR) HSP 1 Score: 119 bits (297), Expect = 4.480e-27 Identity = 69/223 (30.94%), Postives = 117/223 (52.47%), Query Frame = 2
Query: 5 GKVMLGTKRLYSREIEEHGEVGKYKCRSVAQGFRQIKRLHYEGSSFPTPAAASIRMALATGAMMDMGIRHFDFNQAYLLADIDTEMYVDLPEEYRE--FPGAVGWLNNAIYRPVQAGRCWNVKLTEDLKTLGSE*SNADPCMFRKFFTGELVTILVVHVDDLLALTTTKEAMEVFVGDLCSK*KIKDLGKASYYMGCHITRNREKKELKLDEHLYAQTITDHF 667
G +G+K ++ R+ + HG V YK R VA+GF Q + + Y+ + P SIR+ LA A D I D A+L + ++Y+ PE + + +P LN +I+ QA RCWN++ + +K G + +PC++RK +G ++ LV++VDD+L + + L + +KDLG+A+Y +G I R+R K+ L + + Y + F
Sbjct: 246 GSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDENFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPEGFVDPKYPSKACKLNKSIHGLKQASRCWNLRFDQKIKEFGFIKNEDEPCVYRKA-SGRTISFLVLYVDDILIIGNNILMLNEVKHWLGNCFAMKDLGEAAYILGIKIHRDRSKRLLGMSQSAYIDKMMTRF 467 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4622.11547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4622.11547.1 >prot_H-paniculata_contig4622.11547.1 ID=prot_H-paniculata_contig4622.11547.1|Name=mRNA_H-paniculata_contig4622.11547.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp MLGTKRLYSREIEEHGEVGKYKCRSVAQGFRQIKRLHYEGSSFPTPAAASback to top mRNA from alignment at H-paniculata_contig4622:6788..7486+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4622.11547.1 ID=mRNA_H-paniculata_contig4622.11547.1|Name=mRNA_H-paniculata_contig4622.11547.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=699bp|location=Sequence derived from alignment at H-paniculata_contig4622:6788..7486+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4622:6788..7486+ >mRNA_H-paniculata_contig4622.11547.1 ID=mRNA_H-paniculata_contig4622.11547.1|Name=mRNA_H-paniculata_contig4622.11547.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig4622:6788..7486+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |