mRNA_H-paniculata_contig4622.11545.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4622.11545.1
Unique NamemRNA_H-paniculata_contig4622.11545.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4622.11545.1 vs. uniprot
Match: A0A6H5L4A0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4A0_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 5.590e-57
Identity = 108/212 (50.94%), Postives = 142/212 (66.98%), Query Frame = 1 
Query:   55 KTNVLLVFFCLNYVVEGFISGSVPMVSRLSRTGTTSTTSVVMQAEHETSCTFRSKLQSLAVVCALSSSIAL--AAPTAPALAESLPEGTNPFSSICMGFGCGEFHGLEYPGAPAPADEDSITFKSFLESLDKKMVAKVEFQSNGNKAYAWVKSSDKVEDEGMRIRIGEGYPDEQGDGWSSPLWVVRALNDRNIPYKFSYDLGTQGKSKVISK 684
            +   LL+ F L +  E F+  + P+ +  S   T +T S+            RS+++  AV  A+++S+A+   A    A AE LP GTNPF+SICMGFGCGEF GL+YPGAPAP DEDSITFKSFL+SLDK +  KV+F + G+KAYA+VK       E  RIR+GEGYP+EQG+ WSSPLWVVRALNDRN+PY F Y+LG    ++ ++K
Sbjct:    4 RIRALLLGFVLCFS-EAFVP-TTPLATTCSHPATRATMSMKQGTP------LRSRIERAAVAAAVATSVAILSTASVPAAFAEELPPGTNPFTSICMGFGCGEFQGLDYPGAPAPTDEDSITFKSFLQSLDKGLDTKVDFLAGGDKAYAFVKPD--AAGEATRIRVGEGYPNEQGNSWSSPLWVVRALNDRNVPYHFEYNLGKGRATQTVAK 205
[Close]
BLAST of mRNA_H-paniculata_contig4622.11545.1 vs. uniprot
Match: A0A7S2G0Q6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G0Q6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 8.820e-28
Identity = 65/138 (47.10%), Postives = 90/138 (65.22%), Query Frame = 1 
Query:  265 LAAPTAPALAESL--PE--------GTNPFSSICMGFGCGEFHGLEYPGAPAPADEDSITFKSFLESLDKKMVAKVEF-QSNGNKAYAWVKSSDKVEDEGMRIRIGEGYPDEQGDGWSSPLWVVRALNDRNIPYKFSY 645
            LA   APA A+ L  PE        G NPF+S CMGFGC +  GL Y GA AP   +S+ + SFL+ ++ K VA VEF   +G+ AYA +K  +K      RIRIGEG P+E+G+GWSSP++V+R L+++ +PYKF++
Sbjct:   36 LAGAAAPAFADELSTPEANQQLLKTGVNPFNSACMGFGCSDAKGLRYGGAEAPEGIESLPYSSFLKMVESKEVASVEFIPPSGDVAYAILKEDNK------RIRIGEGMPEEKGNGWSSPMYVMRILDNKGVPYKFAF 167
[Close]
BLAST of mRNA_H-paniculata_contig4622.11545.1 vs. uniprot
Match: A0A7S2WW10_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW10_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.060e-24
Identity = 59/131 (45.04%), Postives = 81/131 (61.83%), Query Frame = 1 
Query:  301 LPEGTNPFSSICMGFGCGEFHGLEYPGAPAPADEDSITFKSFLESLDKKMVAKVEF-QSNGNKAYAWVKSSDKVEDEGMRIRIGEGYPDEQGDGWSSPLWVVRALNDRNIPYKFSYDL----GTQGKSKVI 678
            L +  NPF+S CMGFGC +  GLEY GA  P  E+SI F  FLE L+ K VA VEF   +G+ AYA ++ +        RIRIGEG+P+E    WSSPL+V+R L ++ +PY F++      G+QG  + +
Sbjct:   89 LSDSVNPFNSACMGFGCSDARGLEYGGAAKPDSENSIPFSRFLELLEAKKVASVEFLPPSGDVAYATLEDN-------SRIRIGEGFPEELPGAWSSPLYVMRILQNKGVPYTFAFKKVPYRGSQGGKQPL 212
[Close]
BLAST of mRNA_H-paniculata_contig4622.11545.1 vs. uniprot
Match: W7TQH3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQH3_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.600e-21
Identity = 56/127 (44.09%), Postives = 74/127 (58.27%), Query Frame = 1 
Query:  322 FSSICMGFGCGEFHGLEYPGAPA-PADEDSITFKSFLESLDKKMVAKVEFQSNGNKAYAWV--KSSDKV------EDEGMRIRIGEGYPDEQGDGWSSPLWVVRALNDRNIPYKFSYDLGTQGKSKV 675
            + S C+GFGCG ++G +Y GAP     E +I   SFL+ +++K + KVE    GN AYA+V  +  DK       E    R+RIGEG+P E G  WSSPLW+VR L D+ IPY   +D    G  KV
Sbjct:  115 WESTCLGFGCGSYNGPDYGGAPKLETGEKNIDMPSFLKLVEEKRIEKVELLEGGNVAYAYVAPRRGDKEGAGEGKEAGAERVRIGEGFPVENGKTWSSPLWMVRILKDKQIPYTLGFDFS--GSDKV 239
[Close]
BLAST of mRNA_H-paniculata_contig4622.11545.1 vs. uniprot
Match: A0A7S4AY04_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AY04_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.500e-15
Identity = 55/140 (39.29%), Postives = 78/140 (55.71%), Query Frame = 1 
Query:  238 VCALSSSIALAAPTAPALAESLPEG-----TNPFSSICMGFGCGEFHGLEYPGAPAPADEDSITFKSFLESLDKKMVAKVEFQS-NGNKAYAWVKSSDKVEDEGMRIRIGEGYPDEQGDGWSSPLWVVRALNDRNIPYKF 639
            V A+  S+A    ++PA+AE  PE         F+ +   +  GEF GL+     +  DE S+++K F E L    VA VEF + +G+ AY   K  DK      +IRIGEGYP EQ DG+SSP++ +R + +  IPYKF
Sbjct:   42 VVAIGGSVAAFGISSPAMAEQAPETRQGNEVTAFNGLAFNYKGGEFGGLD----ASTLDEPSVSYKDFNEKLKAGEVAFVEFLAPDGDVAYVTFKDEDK------KIRIGEGYPIEQHDGYSSPMFCIRTVKNAGIPYKF 171
[Close]
BLAST of mRNA_H-paniculata_contig4622.11545.1 vs. uniprot
Match: A0A8J5X1D7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X1D7_DIALT)

HSP 1 Score: 83.6 bits (205), Expect = 3.940e-15
Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 1 
Query:  322 FSSICMGFGCGEFHGLEYPGAPAPADEDSITFKSFLESL----DKKMVAKVE-FQSNGNKAYAWVKSSDKVEDEGMRIRIGEGYPDEQGDGWSSPLWVVRALNDRNIPYKFSYDLG 654
            F S C+GFGC  ++G  + G  AP DE ++ F  F   L     +  VAKV+ + + G+K Y  V  +D     G + R+GEG P +  +GWSSPLW+VR L++ N+P+ + +  G
Sbjct:   63 FDSTCLGFGCNNYNGQGFGGMAAPTDEATMPFAQFAAQLKDPEQRARVAKVDIYGAGGDKVY--VSFAD-----GTKARLGEGLPIDDSNGWSSPLWLVRILDNVNVPHAYHFRPG 171
[Close]
BLAST of mRNA_H-paniculata_contig4622.11545.1 vs. uniprot
Match: A0A7S0F0T9_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0F0T9_9EUKA)

HSP 1 Score: 84.0 bits (206), Expect = 8.080e-15
Identity = 58/167 (34.73%), Postives = 87/167 (52.10%), Query Frame = 1 
Query:  265 LAAPTAPALAES--LPEGTNPFSSICMGFGCGEFHGLEYPG-APAPADEDSITFKSFLESLDKKMVAKVEFQS-NGNKAYAWVKSSDKVEDEGMRIRIGEGYPDEQGDGWSSPLWVVRALNDRNIPYKFSYDLGTQGKSKVISK*ACRSKKYNF*WCKTLHPREPLV 753
            LAAP A A A+S  LP      ++ CMGFGC  +   ++ G     A   S+ +  FL++L +K V  V FQ  +G+ A+A +        +G  +RIGEG+P E  + WSSP WVVR L +  +PY +++DL  +G  +   +    + KY     +   P EP V
Sbjct:   41 LAAPLA-AHADSGVLPREGGALAATCMGFGCNPYSNTDFNGLTKEDAPTGSLPYPDFLKALKEKKVEGVVFQPPSGDVAFALI--------DGKSVRIGEGWPVEISNSWSSPTWVVRILKNEGVPYVWNFDLDKKGFDESSGR-QFDTAKYQK---QDSRPYEPYV 194
[Close]
BLAST of mRNA_H-paniculata_contig4622.11545.1 vs. uniprot
Match: A0A7S2L286_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L286_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 5.900e-14
Identity = 59/146 (40.41%), Postives = 79/146 (54.11%), Query Frame = 1 
Query:  235 VVCALSSSIALAA-------PTAPALAESLPEG---TNPFSSICMGFGCGEFHGLEYPGAPAPADEDSITFKSFLESLDKKMVAKVEFQS-NGNKAYAWVKSSDKVEDEGMRIRIGEGYPDEQGDGWSSPLWVVRALNDRNIPYKF 639
            VV  L+SSI  AA         A A AE++  G     PF+S+   +  GE   ++    P+  +E S+++  FLE L    V  VEF + NG+KAYA  KS D    +   IRIGEGYP E   GWSSP +VV+A+    +PYKF
Sbjct:   64 VVSLLTSSIVTAAGGAVLFPAAARAEAETMERGGVPLTPFNSLAFNYRGGESPTVD----PSELNEPSVSYAEFLEKLSANQVTFVEFLAPNGDKAYATFKSEDSSNSK--PIRIGEGYPIEDPQGWSSPAFVVKAVAKAKVPYKF 203
[Close]
BLAST of mRNA_H-paniculata_contig4622.11545.1 vs. uniprot
Match: A0A7S2XT96_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XT96_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 6.590e-14
Identity = 46/110 (41.82%), Postives = 68/110 (61.82%), Query Frame = 1 
Query:  316 NPFSSICMGFGCGEFHGLEYPGAPAPADEDSITFKSFLESLDKKMVAKVEFQS-NGNKAYAWVKSSDKVEDEGMRIRIGEGYPDEQGDGWSSPLWVVRALNDRNIPYKFS 642
            N F+++  G+   EF GL+     +   E S+ +K FLE L  + VA VEF + +G+ AYA  K+ D    E   IRIGEGYP EQ +G+SSP + VR++ ++ +PYKF+
Sbjct:   13 NAFNTLTFGYRGSEFGGLD----ASTLTEPSVPYKEFLEKLTNEEVAFVEFLAPDGDVAYATFKTKDGTGTE-TPIRIGEGYPIEQHNGYSSPAFAVRSVANKKVPYKFT 117
[Close]
BLAST of mRNA_H-paniculata_contig4622.11545.1 vs. uniprot
Match: A0A7S0YV26_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YV26_9CRYP)

HSP 1 Score: 77.0 bits (188), Expect = 1.310e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:  391 PADEDSITFKSFLESLDKKMVAKVEFQS-NGNKAYAWVKSSDKVEDEGMRIRIGEGYPDEQGDGWSSPLWVVRALNDRNIPYKFSY 645
            P DE+S++FK F + L+   V +V+F   +G+KAYA  K       +G +IRIGEG+P E G+  SSPL+VV+ L D+ +PYKF +
Sbjct:   11 PTDEESVSFKEFFDGLNAGRVERVDFYGYSGDKAYATFK-------DGKKIRIGEGFPVEIGNEASSPLFVVKLLGDKGVPYKFHF 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4622.11545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5L4A0_9PHAE5.590e-5750.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2G0Q6_9STRA8.820e-2847.10Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2WW10_9STRA1.060e-2445.04Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7TQH3_9STRA2.600e-2144.09Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S4AY04_9STRA2.500e-1539.29Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A8J5X1D7_DIALT3.940e-1537.93Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S0F0T9_9EUKA8.080e-1534.73Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S2L286_9STRA5.900e-1440.41Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2XT96_9STRA6.590e-1441.82Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S0YV26_9CRYP1.310e-1345.35Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4622contigH-paniculata_contig4622:1305..5298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.9
Seed ortholog evalue3.7e-50
Seed eggNOG ortholog2880.D7FVV2
Hectar predicted targeting categorychloroplast
EggNOG OGs2CE5E@1,2SD0Y@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_002260.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1486
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4622.11545.1prot_H-paniculata_contig4622.11545.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4622 1356..4499 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930380.6763287-UTR-H-paniculata_contig4622:1304..13551622930380.6763287-UTR-H-paniculata_contig4622:1304..1355Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4622 1305..1355 +
1691481265.9066837-UTR-H-paniculata_contig4622:1304..13551691481265.9066837-UTR-H-paniculata_contig4622:1304..1355Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4622 1305..1355 +
1622930380.7559266-UTR-H-paniculata_contig4622:4499..52981622930380.7559266-UTR-H-paniculata_contig4622:4499..5298Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4622 4500..5298 +
1691481265.9710371-UTR-H-paniculata_contig4622:4499..52981691481265.9710371-UTR-H-paniculata_contig4622:4499..5298Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4622 4500..5298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930380.6926804-CDS-H-paniculata_contig4622:1355..16141622930380.6926804-CDS-H-paniculata_contig4622:1355..1614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4622 1356..1614 +
1691481265.918172-CDS-H-paniculata_contig4622:1355..16141691481265.918172-CDS-H-paniculata_contig4622:1355..1614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4622 1356..1614 +
1622930380.7067044-CDS-H-paniculata_contig4622:1861..19201622930380.7067044-CDS-H-paniculata_contig4622:1861..1920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4622 1862..1920 +
1691481265.9323218-CDS-H-paniculata_contig4622:1861..19201691481265.9323218-CDS-H-paniculata_contig4622:1861..1920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4622 1862..1920 +
1622930380.7217138-CDS-H-paniculata_contig4622:3512..37671622930380.7217138-CDS-H-paniculata_contig4622:3512..3767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4622 3513..3767 +
1691481265.9414628-CDS-H-paniculata_contig4622:3512..37671691481265.9414628-CDS-H-paniculata_contig4622:3512..3767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4622 3513..3767 +
1622930380.7391407-CDS-H-paniculata_contig4622:4436..44991622930380.7391407-CDS-H-paniculata_contig4622:4436..4499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4622 4437..4499 +
1691481265.9585903-CDS-H-paniculata_contig4622:4436..44991691481265.9585903-CDS-H-paniculata_contig4622:4436..4499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4622 4437..4499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4622.11545.1

>prot_H-paniculata_contig4622.11545.1 ID=prot_H-paniculata_contig4622.11545.1|Name=mRNA_H-paniculata_contig4622.11545.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=212bp
MKTNVLLVFFCLNYVVEGFISGSVPMVSRLSRTGTTSTTSVVMQAEHETS
CTFRSKLQSLAVVCALSSSIALAAPTAPALAESLPEGTNPFSSICMGFGC
GEFHGLEYPGAPAPADEDSITFKSFLESLDKKMVAKVEFQSNGNKAYAWV
KSSDKVEDEGMRIRIGEGYPDEQGDGWSSPLWVVRALNDRNIPYKFSYDL
GTQGKSKVISK*
back to top

mRNA from alignment at H-paniculata_contig4622:1305..5298+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4622.11545.1 ID=mRNA_H-paniculata_contig4622.11545.1|Name=mRNA_H-paniculata_contig4622.11545.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3994bp|location=Sequence derived from alignment at H-paniculata_contig4622:1305..5298+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAAAAGGTCTCTCGTGCCCTTGCTCCCTACCCTCTCCTTATCACGCTGC
AATGAAGACTAACGTGCTTTTAGTGTTCTTCTGTTTGAACTATGTGGTCG
AAGGGTTTATCTCCGGATCAGTCCCTATGGTCAGTAGGCTATCACGAACA
GGAACGACATCAACAACATCAGTAGTCATGCAGGCGGAACATGAAACATC
ATGCACCTTCAGGTCGAAGCTGCAAAGCCTGGCCGTGGTCTGTGCCCTGT
CTAGTTCTATCGCCCTCGCGGCACCCACCGCTCCCGCCTTGGCAGAAAGC
CTCCCGGAAGGCAAGAACTTGTCAACACTGGGGTTCGAGTGCATGCGCAT
CCCGTACATTTTCTTTGTCTGAGATACGTGAGGGGGGTGAGGGGAGTTTC
AGGATACTATCTGTCGTACTAGCCAGTTATCGGGGTAACTGTGTTACAGC
TTTCACGAGTTCATTTGTTGCGTCAATTGCAAACAGCTAACCTTGAAGGT
AACTGCACCCCTCCCCCCTGCCTGCGCCTTTTCCCTTTGCCTGGCGTTAT
TTATCAGGGACGAATCCGTTCTCATCAATATGTATGGGCTTCGGTTGTGG
GGAGTTTCATGGGCTGGTAAGCACGATTCAATTGGCTGGAGTCCAGCGTC
GTGTTCGTTCTAAAGAGAAGTACAGAAACGTGCTTACGCATGTGGATTCA
AGGATCACATTTGCTCCCTTTCGATTGTAAATGCAGTCACATCTCTGTCC
CATAAGTTGCCCGCTCCCGTTGCATTGTGTTCTTTGTGGACAGCGCAACC
TGTAGTTTCTACGCCGGTTGTACTTTCGTTGCAAGGAGAATTATGTCGTA
TGTGTTTCCGAAGAACCTGTGGAATTATCATGTATTTCGTACCTTGGGTC
TGTTGTGAGTCACGACAGGCAGTTGGATACTGATATTGACATCGCTTCGC
ATTCACATTTTATTTTCGTTGTGTCAGCTGTTGCTCGAAATGGTGTGTTC
AACGTATCATGATCAATCGGTTTTGAATATCATCTGTTCGGTGGAATTTC
TTGGCGTTTTAGACCGATGGTACTCGGGAATGTTCCGTACGCGGAATAGC
TACACTGTTGTGGATTAAAATTTCAGTGTTCTTCTGTTGGTTATCTTCAA
ATATATGCGAAGACAGAATAGTGATATCATAGCGAACCTACGTTCTTCAC
CGCACGACACCCCCGTCATTTTTTGTCCAAAATTGGCCCTATAGATTTTG
ACAGATTTGGCAAGGTTACTGGGCAAAGCGTGCAAGGTGGACTCCGCACG
AGAGACCAAAAACAGTCAACGGGCCAACGAGCACGAATCAATGCGTTCCG
CAATGCAATTATGGTTCCCTACAACCGTATAAGCACCCCGGAGTTCAAGA
AATAAGTTTCAGTTCTCTGTTCTCCTTGCGATGTTGTGGGTATGTTACTA
TTTTTCAACTATTCTGCACATTGTTTAGACCGAATTGCCCTTAGGGTCTA
ATTTCCATGCGAATTTTGGGAGTTGAAATGAAATTTTGAGGAGATGGGCG
CATCGTAAATACTAAGATCTCCACTGATCGTGGGTTTTTTCTTCTTCTTT
TTTTTCTAAAATACAGACGTATCTTTTAACCAAAAATTATGGAAACAGAC
TCAAAATTGAAGAAGAAAGAAAACGAAGGCATCAACAGTGAAAACCTTTT
TGTTCTTACGATGCGCTCATCTCATGTTTTTGAAGTGAAAGCTTCTACAA
TTCACATGGGAATTTCCCGGCCAAGGTGTTTTGCCTGTCTTACTGGGTTC
GGCCTGCATGACCTCTTTGCAATGTTGGAGAACGATAAAAATGATTACTG
GGTATCCACTGAACGGAAATTGTTATGCTGTGAAGCGTAGATACGGTTGG
GCTCACAATCTGACCCTTCGCAATGATTGACGATGGTCGTCATAAGGATA
GCGTGGAATCATAGGCAGAAAGACACTGAAGTCCACACTTTCATTAACGG
CCTCTTAGAAGTTTAGAGTAAACGATCTGTTCATGTTCACCACATGGGCT
GTGAGCTGAAGGTGCCGCAAACTGTCGGCTCCGATTTGATCAAATTTTGC
TGACAATGATATATGCCAGATACACAACTGAGATCTGAGGTTAGCTGCGT
AACCTCAACAGAGTCCGCCTCCCCCAATCTCACTCGCGCCTAAATTTTTC
GGTAACAGGAGTATCCTGGCGCACCCGCTCCGGCGGACGAGGATTCTATA
ACCTTCAAGTCGTTTCTTGAATCGCTGGACAAAAAAATGGTGGCGAAAGT
CGAGTTTCAATCCAATGGCAATAAGGCCTACGCATGGGTGAAGAGCTCGG
ACAAGGTCGAGGATGAGGGTATGAGGATCAGGATAGGGGAGGGGTATCCG
GACGAGCAGGGAGATGGGTGGAGCTCGCCGCTGTGGGTCGTGCGCGCTTT
GAACGATCGCAACGTGAGTTTTTTTTGGAAGGGGATGGGAGGGTGATTCG
TGTAAAGACAGACAGGTAAGACTGGTAGAACACGATTGTTGGAGAAAATC
TGTCGAGGTATGTAAGGGGGGATTATACATTGGTTTATTTATGTGGCTGG
TAAATGGCATCCTGTCAAATCTGCCAGAGTCACTGTACCTCAGCAGATAT
CGCGCAAGCGCAGCACGTCAAGCCCGGTTTCGTTCGATATTGATCCTCAA
GTGGTGGCAGTTCATTCTCCAAACTTCGATACGTGACTCGCTAAATACTG
ACCATGTGATGCGTAATGAGTGGTTTTCTAGACCCAGCGAAAATGGCCAA
AAGCTGCAAACGAGCGCAGAGCTGGTTTGTAGTAGATAGTTCAGAAAGAA
TGGATTTATCCAAGGAGACCTTTACAATCAAGATAGGAACAGCGTAGATT
TTATGTTTTTATCATGCCGAGGTTTGCCACAGTAGTAGCGTTACAAGGCG
GGTCCTTAGGGGAAATTATGTACATATTTGCCAGGTGGCAACTACGCTGG
CTCGGATCAGATATACTTATTTTGTATGGCTTCTAATGTTTGTATCATCA
TAATTTGACAGTTGTTAGCATGGCTATTTCCTTCCCTGCACCGTTGGGTT
TCCGTCCGTACATATTGCTCCTTCCCGCCCAGATACCGTACAAATTTTCG
TACGACCTGGGAACGCAGGGCAAATCCAAGGTCATCTCGAAGTGAGCCTG
TCGCTCCAAAAAATACAATTTTTGATGGTGCAAAACCTTGCACCCTCGAG
AGCCTCTTGTTGCTGCTGCTACCGTCGGCTGACTGGAGGGAAGCGCTTGG
TTAGGCTGGTCGCTCCGCTGCGTCCTGGTTATGTCCTGGGGCTTGATGCC
CGGTGGGAAGCCCTTGCTATTGCAGGAGTAACACGCGTGGGGGACGAGTT
GAACCTAAATATTGAAAGACTACTATTGCAGATGTGGCCAATACCAGATA
CAAAGAGATAGTTGTGAGACGAATCTGTTGAGGACAGTGCCTTCTTTTTC
ACGCAGTTTTTTTTTTTTTTCTTAAATAAGTGTACATGGATACATGTTTT
CTGGACGAGACGGGGGGACGGAACGGGGGTGTTGGATGAGTGAGCCCGAC
TTTCCATATTTGATGGAGTGGCACGACACTTGTGTTTCCTGGTGAACCTA
TGGCGGCAGCGGATCGATTTAGCCTCGCATAGGTTTCAAGGGCCCAATTG
AGATAGCAATGGGGGTTGTGAATTTCGACATTATTTGTGGTGCGCACGTG
ATCGCGCCCTGTAGCGATAGAGGTTAAGTACGCACATTGCAGTATTTTGG
TATCATTTGCAGTGCCTTAATAATGCAGTTAGCTCTGTCTCTTGTGACTC
ACAACACGTATGGGAATCTTCACGGCAGGAGGAATTACACACGAATATTC
ACTAAATTTGAAAATCTCTTGTACGGGATGTACATATAGACCCTATAATA
TCAAATGAAAAAACGTCATTCAACAATGCACCAACTACCTTTTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4622:1305..5298+

>mRNA_H-paniculata_contig4622.11545.1 ID=mRNA_H-paniculata_contig4622.11545.1|Name=mRNA_H-paniculata_contig4622.11545.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at H-paniculata_contig4622:1305..5298+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGACTAACGTGCTTTTAGTGTTCTTCTGTTTGAACTATGTGGTCGA
AGGGTTTATCTCCGGATCAGTCCCTATGGTCAGTAGGCTATCACGAACAG
GAACGACATCAACAACATCAGTAGTCATGCAGGCGGAACATGAAACATCA
TGCACCTTCAGGTCGAAGCTGCAAAGCCTGGCCGTGGTCTGTGCCCTGTC
TAGTTCTATCGCCCTCGCGGCACCCACCGCTCCCGCCTTGGCAGAAAGCC
TCCCGGAAGATGAAGACTAACGTGCTTTTAGTGTTCTTCTGTTTGAACTA
TGTGGTCGAAGGGTTTATCTCCGGATCAGTCCCTATGGTCAGTAGGCTAT
CACGAACAGGAACGACATCAACAACATCAGTAGTCATGCAGGCGGAACAT
GAAACATCATGCACCTTCAGGTCGAAGCTGCAAAGCCTGGCCGTGGTCTG
TGCCCTGTCTAGTTCTATCGCCCTCGCGGCACCCACCGCTCCCGCCTTGG
CAGAAAGCCTCCCGGAAGGGACGAATCCGTTCTCATCAATATGTATGGGC
TTCGGTTGTGGGGAGTTTCATGGGCTGGGACGAATCCGTTCTCATCAATA
TGTATGGGCTTCGGTTGTGGGGAGTTTCATGGGCTGGAGTATCCTGGCGC
ACCCGCTCCGGCGGACGAGGATTCTATAACCTTCAAGTCGTTTCTTGAAT
CGCTGGACAAAAAAATGGTGGCGAAAGTCGAGTTTCAATCCAATGGCAAT
AAGGCCTACGCATGGGTGAAGAGCTCGGACAAGGTCGAGGATGAGGGTAT
GAGGATCAGGATAGGGGAGGGGTATCCGGACGAGCAGGGAGATGGGTGGA
GCTCGCCGCTGTGGGTCGTGCGCGCTTTGAACGATCGCAACGAGTATCCT
GGCGCACCCGCTCCGGCGGACGAGGATTCTATAACCTTCAAGTCGTTTCT
TGAATCGCTGGACAAAAAAATGGTGGCGAAAGTCGAGTTTCAATCCAATG
GCAATAAGGCCTACGCATGGGTGAAGAGCTCGGACAAGGTCGAGGATGAG
GGTATGAGGATCAGGATAGGGGAGGGGTATCCGGACGAGCAGGGAGATGG
GTGGAGCTCGCCGCTGTGGGTCGTGCGCGCTTTGAACGATCGCAACATAC
CGTACAAATTTTCGTACGACCTGGGAACGCAGGGCAAATCCAAGGTCATC
TCGAAGTGAATACCGTACAAATTTTCGTACGACCTGGGAACGCAGGGCAA
ATCCAAGGTCATCTCGAAGTGA
back to top