mRNA_H-paniculata_contig4622.11546.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4622.11546.1
Unique NamemRNA_H-paniculata_contig4622.11546.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4622.11546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4622contigH-paniculata_contig4622:5964..6466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size504
Cds size438
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930380.612699-UTR-H-paniculata_contig4622:5963..60281622930380.612699-UTR-H-paniculata_contig4622:5963..6028Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4622 5964..6028 +
1691481265.8680937-UTR-H-paniculata_contig4622:5963..60281691481265.8680937-UTR-H-paniculata_contig4622:5963..6028Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4622 5964..6028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930380.6281936-CDS-H-paniculata_contig4622:6028..64661622930380.6281936-CDS-H-paniculata_contig4622:6028..6466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4622 6029..6466 +
1691481265.8945897-CDS-H-paniculata_contig4622:6028..64661691481265.8945897-CDS-H-paniculata_contig4622:6028..6466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4622 6029..6466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4622.11546.1prot_H-paniculata_contig4622.11546.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4622 6029..6466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4622.11546.1

>prot_H-paniculata_contig4622.11546.1 ID=prot_H-paniculata_contig4622.11546.1|Name=mRNA_H-paniculata_contig4622.11546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=146bp
MMGIAHNHPDGTLQILNADTGEIVIRQNVSWHPETPEIRGGGDQAAASGG
GDGAGGDQTPQPVHGEKMEVTTAPPPTQQLDAAVEPQELGDGKILPELGG
GKPNQQHWNSEPEQQPESGELLVSGEQPPQSAPLRKLANHWTGSQP
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mRNA from alignment at H-paniculata_contig4622:5964..6466+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4622.11546.1 ID=mRNA_H-paniculata_contig4622.11546.1|Name=mRNA_H-paniculata_contig4622.11546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=503bp|location=Sequence derived from alignment at H-paniculata_contig4622:5964..6466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGTGGGATTTATATGAAAGATCACCAAGAAACACAGGCTGGCGGTGGCC
GGGGAGAAGTGCCTCATGATGGGGATCGCCCACAACCACCCGGACGGCAC
CCTACAGATACTCAATGCTGACACTGGCGAAATCGTCATCCGCCAGAACG
TGTCATGGCACCCCGAGACGCCCGAGATCCGAGGGGGTGGTGATCAGGCC
GCGGCATCTGGGGGGGGCGATGGCGCCGGCGGCGACCAGACGCCCCAACC
CGTTCATGGAGAGAAGATGGAGGTGACGACGGCGCCGCCACCGACGCAGC
AGCTGGATGCGGCGGTGGAGCCACAGGAGTTGGGGGACGGCAAAATACTG
CCGGAGCTGGGCGGCGGCAAGCCGAACCAACAGCATTGGAACAGTGAACC
GGAGCAGCAGCCTGAAAGCGGCGAACTGCTAGTCAGCGGTGAGCAGCCGC
CACAGTCAGCCCCACTCCGCAAACTAGCCAACCACTGGACGGGAAGCCAA
CCG
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Coding sequence (CDS) from alignment at H-paniculata_contig4622:5964..6466+

>mRNA_H-paniculata_contig4622.11546.1 ID=mRNA_H-paniculata_contig4622.11546.1|Name=mRNA_H-paniculata_contig4622.11546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at H-paniculata_contig4622:5964..6466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGGGATCGCCCACAACCACCCGGACGGCACCCTACAGATACTCAA
TGCTGACACTGGCGAAATCGTCATCCGCCAGAACGTGTCATGGCACCCCG
AGACGCCCGAGATCCGAGGGGGTGGTGATCAGGCCGCGGCATCTGGGGGG
GGCGATGGCGCCGGCGGCGACCAGACGCCCCAACCCGTTCATGGAGAGAA
GATGGAGGTGACGACGGCGCCGCCACCGACGCAGCAGCTGGATGCGGCGG
TGGAGCCACAGGAGTTGGGGGACGGCAAAATACTGCCGGAGCTGGGCGGC
GGCAAGCCGAACCAACAGCATTGGAACAGTGAACCGGAGCAGCAGCCTGA
AAGCGGCGAACTGCTAGTCAGCGGTGAGCAGCCGCCACAGTCAGCCCCAC
TCCGCAAACTAGCCAACCACTGGACGGGAAGCCAACCGATGATGGGGATC
GCCCACAACCACCCGGACGGCACCCTACAGATACTCAATGCTGACACTGG
CGAAATCGTCATCCGCCAGAACGTGTCATGGCACCCCGAGACGCCCGAGA
TCCGAGGGGGTGGTGATCAGGCCGCGGCATCTGGGGGGGGCGATGGCGCC
GGCGGCGACCAGACGCCCCAACCCGTTCATGGAGAGAAGATGGAGGTGAC
GACGGCGCCGCCACCGACGCAGCAGCTGGATGCGGCGGTGGAGCCACAGG
AGTTGGGGGACGGCAAAATACTGCCGGAGCTGGGCGGCGGCAAGCCGAAC
CAACAGCATTGGAACAGTGAACCGGAGCAGCAGCCTGAAAGCGGCGAACT
GCTAGTCAGCGGTGAGCAGCCGCCACAGTCAGCCCCACTCCGCAAACTAG
CCAACCACTGGACGGGAAGCCAACCG
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