prot_H-paniculata_contig4621.11544.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4621.11544.1
Unique Nameprot_H-paniculata_contig4621.11544.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length113
Homology
BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5L6K5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K5_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 5.500e-29
Identity = 52/111 (46.85%), Postives = 77/111 (69.37%), Query Frame = 0
Query:    3 LYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAWHA 113
            L+ WK D  G    AKARLVARGD Q    ++ + +APT A S++R    +A EL+L++C  D+ QAF+++ L + I +R+ EGCG  +GK+V+LN+S+YG +QASR W+A
Sbjct:   57 LFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYA 167          
BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5K7Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y0_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 6.380e-27
Identity = 53/111 (47.75%), Postives = 78/111 (70.27%), Query Frame = 0
Query:    3 LYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAWHA 113
            ++ WK D  G    AKARLVARGD Q    ++ + +APT A S++R    +A EL+L++C  D+ QAF+++ LK+ I +RL EGCG  +GK+V+LN+S+YG +QASR W+A
Sbjct: 1466 IFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLKEDIFMRLPEGCGALSGKIVQLNKSLYGLRQASREWYA 1576          
BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5KMK9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK9_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 6.950e-27
Identity = 52/110 (47.27%), Postives = 74/110 (67.27%), Query Frame = 0
Query:    3 LYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAWH 112
            ++ WK+D  G  + AKARLVARG  Q  G ++  TF+P  +++++R    +A  L+ D+C  D  QAF+QSEL + + +RL  GCG  +GKVV+L RS+YG KQASR WH
Sbjct:  154 VFSWKRDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWH 263          
BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.610e-26
Identity = 53/110 (48.18%), Postives = 73/110 (66.36%), Query Frame = 0
Query:    3 LYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAWH 112
            +Y WK D  G  + AKARLVARG  Q  G ++  TF+P  +++++R    +A  L+ D+C  D  QAF+QSEL + + +RL  GCG  +GKVV+L RS+YG KQASR WH
Sbjct: 1296 VYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCPFDAQQAFVQSELDEIVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWH 1405          
BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5JLU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU1_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.620e-26
Identity = 53/111 (47.75%), Postives = 77/111 (69.37%), Query Frame = 0
Query:    3 LYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAWHA 113
            ++ WK D  G    AKARLVARGD Q    ++ + +APT A S++R    +A EL+L++C  DV QAF+++ LK+ I +RL EGCG  +GK+V+LN+S+YG +QA R W+A
Sbjct: 1216 IFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCQFDVDQAFVRAPLKEDIFMRLPEGCGALSGKIVQLNKSLYGLRQAPREWYA 1326          
BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.870e-26
Identity = 52/111 (46.85%), Postives = 77/111 (69.37%), Query Frame = 0
Query:    3 LYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAWHA 113
            L+ WK D  G    AKARLVARGD Q    ++ + +APT A S++R    +A EL+L++C  D+ QAF+++ L + I +R+ EGCG  +GK+V+LN+S+YG +QASR W+A
Sbjct:  156 LFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYA 266          
BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5K827_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K827_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.130e-26
Identity = 52/111 (46.85%), Postives = 77/111 (69.37%), Query Frame = 0
Query:    3 LYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAWHA 113
            L+ WK D  G    AKARLVARGD Q    ++ + +APT A S++R    +A EL+L++C  D+ QAF+++ L + I +R+ EGCG  +GK+V+LN+S+YG +QASR W+A
Sbjct:  472 LFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYA 582          
BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5JA99_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA99_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.130e-26
Identity = 52/111 (46.85%), Postives = 78/111 (70.27%), Query Frame = 0
Query:    3 LYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAWHA 113
            ++ WK D  G    AKARLVARGD Q    ++ +++APT   S++R    +A EL+L++C  D+ QAF+++ LK+ I +RL EGCG  +GK+V+LN+S+YG +QASR W+A
Sbjct:  658 IFDWKVDAFGFPTKAKARLVARGDMQKECIDFGDSYAPTVTSSSVRMLAALACELDLELCHFDIDQAFVRALLKEDIFMRLPEGCGALSGKIVQLNKSLYGLRQASREWYA 768          
BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5K592_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K592_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.960e-26
Identity = 53/109 (48.62%), Postives = 76/109 (69.72%), Query Frame = 0
Query:    3 LYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAW 111
            ++ WK D  G    AKARLVARGD +    N+ + +APT A S++R    +A EL+L++C  D+ QAF+++ LK+ I +RL EGCG  +GKVV+LN+S+YG +QASR W
Sbjct:  889 IFDWKVDAFGFPTKAKARLVARGDMKKEYINFGDLYAPTVASSSVRMLAALACELDLELCHSDIDQAFVRAPLKEDIFMRLPEGCGALSGKVVQLNKSVYGLRQASREW 997          
BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5KHQ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ3_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.700e-26
Identity = 49/111 (44.14%), Postives = 74/111 (66.67%), Query Frame = 0
Query:    3 LYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAWHA 113
            ++ WK D  G     K+RLVARGD Q    ++   +APT ++S +R    +A EL LD+C  D+ QAF++SEL++ +++RL + CG  +G +VKL +S+YG +QASR WHA
Sbjct:   21 VFDWKADEFGWPTKVKSRLVARGDMQREYIDFGELYAPTGSVSCVRMLAALACELNLDLCHFDIEQAFVRSELEEDVYMRLPQACGALSGMIVKLGKSLYGLRQASRQWHA 131          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6K5_9PHAE5.500e-2946.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K7Y0_9PHAE6.380e-2747.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KMK9_9PHAE6.950e-2747.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBJ6_9PHAE1.610e-2648.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLU1_9PHAE1.620e-2647.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K307_9PHAE1.870e-2646.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K827_9PHAE2.130e-2646.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JA99_9PHAE2.130e-2646.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K592_9PHAE2.960e-2648.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KHQ3_9PHAE3.700e-2644.14Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 4..112
e-value: 1.1E-18
score: 67.8
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..112
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 3..112

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4621contigH-paniculata_contig4621:12632..12970 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4621.11544.1mRNA_H-paniculata_contig4621.11544.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4621 12632..12994 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4621.11544.1 ID=prot_H-paniculata_contig4621.11544.1|Name=mRNA_H-paniculata_contig4621.11544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MCLYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTR
IVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRS
IYGPKQASRAWHA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like