mRNA_H-paniculata_contig4621.11544.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4621.11544.1
Unique NamemRNA_H-paniculata_contig4621.11544.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5L6K5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K5_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 9.230e-30
Identity = 54/116 (46.55%), Postives = 79/116 (68.10%), Query Frame = 1 
Query:   16 IDSMCLYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAWHA 363
            I S  L+ WK D  G    AKARLVARGD Q    ++ + +APT A S++R    +A EL+L++C  D+ QAF+++ L + I +R+ EGCG  +GK+V+LN+S+YG +QASR W+A
Sbjct:   52 IKSKLLFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYA 167
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BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5KMK9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK9_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 5.010e-28
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 1 
Query:    4 GKKLIDSMCLYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAWH 360
            G  +I +  ++ WK+D  G  + AKARLVARG  Q  G ++  TF+P  +++++R    +A  L+ D+C  D  QAF+QSEL + + +RL  GCG  +GKVV+L RS+YG KQASR WH
Sbjct:  145 GTNVISAKWVFSWKRDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWH 263
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BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 7.020e-28
Identity = 53/120 (44.17%), Postives = 84/120 (70.00%), Query Frame = 1 
Query:    1 EGKKLIDSMCLYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAWH 360
            EG  +ID+  ++KWK D  G ++ AKARLVA+G KQ HG +Y  TF+PT+  +++R  + +A +  L++  LD+ QAF+QS+L   + ++L  GC   +GK+V+LN+S+YG KQASR ++
Sbjct:  458 EGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFY 577
[Close]
BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 7.060e-28
Identity = 53/120 (44.17%), Postives = 84/120 (70.00%), Query Frame = 1 
Query:    1 EGKKLIDSMCLYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAWH 360
            EG  +ID+  ++KWK D  G ++ AKARLVA+G KQ HG +Y  TF+PT+  +++R  + +A +  L++  LD+ QAF+QS+L   + ++L  GC   +GK+V+LN+S+YG KQASR ++
Sbjct:  522 EGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFY 641
[Close]
BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 7.060e-28
Identity = 53/120 (44.17%), Postives = 84/120 (70.00%), Query Frame = 1 
Query:    1 EGKKLIDSMCLYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAWH 360
            EG  +ID+  ++KWK D  G ++ AKARLVA+G KQ HG +Y  TF+PT+  +++R  + +A +  L++  LD+ QAF+QS+L   + ++L  GC   +GK+V+LN+S+YG KQASR ++
Sbjct:  666 EGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFY 785
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BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.210e-27
Identity = 53/119 (44.54%), Postives = 84/119 (70.59%), Query Frame = 1 
Query:    4 GKKLIDSMCLYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAWH 360
            G  +ID+  ++KWK D  G ++ AKARLVA+G KQ HG +Y  TF+PT+  +++R  + +A +  L++  LD+ QAF+Q++L   + ++L  GCG  +GKVV+LN+S+YG KQASR ++
Sbjct:  208 GCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFY 326
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BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.350e-27
Identity = 55/119 (46.22%), Postives = 77/119 (64.71%), Query Frame = 1 
Query:    4 GKKLIDSMCLYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAWH 360
            G  +I +  +Y WK D  G  + AKARLVARG  Q  G ++  TF+P  +++++R    +A  L+ D+C  D  QAF+QSEL + + +RL  GCG  +GKVV+L RS+YG KQASR WH
Sbjct: 1287 GTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCPFDAQQAFVQSELDEIVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWH 1405
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BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5K7Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y0_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.350e-27
Identity = 55/116 (47.41%), Postives = 80/116 (68.97%), Query Frame = 1 
Query:   16 IDSMCLYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAWHA 363
            I S  ++ WK D  G    AKARLVARGD Q    ++ + +APT A S++R    +A EL+L++C  D+ QAF+++ LK+ I +RL EGCG  +GK+V+LN+S+YG +QASR W+A
Sbjct: 1461 IKSKLIFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLKEDIFMRLPEGCGALSGKIVQLNKSLYGLRQASREWYA 1576
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BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.180e-27
Identity = 53/120 (44.17%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:    1 EGKKLIDSMCLYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAWH 360
            EG  +ID+  ++KWK D  G ++ AKARLVA+G KQ HG +Y  TF+PT+  +++R  + +A +  L++  LD+ QAF QS+L   + ++L  GC   +GK+V+LN+S+YG KQASR ++
Sbjct:  253 EGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFY 372
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BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.310e-27
Identity = 53/120 (44.17%), Postives = 83/120 (69.17%), Query Frame = 1 
Query:    1 EGKKLIDSMCLYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTRIVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRSIYGPKQASRAWH 360
            EG  +ID+  ++KWK D  G ++ AKARLVA+G KQ HG +Y  TF+PT+  +++R  + +A +  L++  LD+ QAF+QS+L   + ++L  GC   +GK+V+LN+S YG KQASR ++
Sbjct:  186 EGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSWYGLKQASRTFY 305
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4621.11544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6K5_9PHAE9.230e-3046.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMK9_9PHAE5.010e-2845.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LDZ0_9PHAE7.020e-2844.17CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE7.060e-2844.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE7.060e-2844.17CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KPV1_9PHAE1.210e-2744.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBJ6_9PHAE1.350e-2746.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Y0_9PHAE1.350e-2747.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV80_9PHAE3.180e-2744.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JP36_9PHAE3.310e-2744.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4621contigH-paniculata_contig4621:12632..12994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score89.7
Seed ortholog evalue9.2e-16
Seed eggNOG ortholog37682.EMT29944
KEGG koko:K11718
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0003674,GO:0003824,GO:0003980,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006011,GO:0006139,GO:0006457,GO:0006458,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006515,GO:0006725,GO:0006793,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008194,GO:0008219,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009626,GO:0009719,GO:0009725,GO:0009751,GO:0009812,GO:0009987,GO:0010033,GO:0010204,GO:0010243,GO:0010498,GO:0012501,GO:0012505,GO:0014070,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0023052,GO:0030163,GO:0030968,GO:0031347,GO:0031349,GO:0033554,GO:0034050,GO:0034620,GO:0034641,GO:0034645,GO:0034976,GO:0035251,GO:0035966,GO:0035967,GO:0036211,GO:0036503,GO:0042221,GO:0042440,GO:0042493,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045087,GO:0045088,GO:0045089,GO:0046283,GO:0046483,GO:0046527,GO:0046677,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051603,GO:0051716,GO:0051788,GO:0055086,GO:0065007,GO:0070085,GO:0070887,GO:0071218,GO:0071310,GO:0071704,GO:0071712,GO:0080134,GO:0097359,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901700
EggNOG free text desc.UDP-glucose:Glycoprotein Glucosyltransferase
EggNOG OGs37KVS@33090,3G8N2@35493,3I8HX@38820,3KV3N@4447,COG2801@1,KOG0017@2759,KOG1879@1,KOG1879@2759
COG Functional cat.G
CAZyGT24
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons1
Model size363
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930380.5434425-CDS-H-paniculata_contig4621:12631..129701622930380.5434425-CDS-H-paniculata_contig4621:12631..12970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4621 12632..12970 -
1691481265.841092-CDS-H-paniculata_contig4621:12631..129701691481265.841092-CDS-H-paniculata_contig4621:12631..12970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4621 12632..12970 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930380.56441-UTR-H-paniculata_contig4621:12970..129941622930380.56441-UTR-H-paniculata_contig4621:12970..12994Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4621 12971..12994 -
1691481265.853881-UTR-H-paniculata_contig4621:12970..129941691481265.853881-UTR-H-paniculata_contig4621:12970..12994Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4621 12971..12994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4621.11544.1prot_H-paniculata_contig4621.11544.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4621 12632..12970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4621.11544.1

>prot_H-paniculata_contig4621.11544.1 ID=prot_H-paniculata_contig4621.11544.1|Name=mRNA_H-paniculata_contig4621.11544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MCLYKWKQDPDGMVIGAKARLVARGDKQVHGQNYDNTFAPTSAMSTLRTR
IVVATELELDMCLLDVAQAFIQSELKDGIHLRLTEGCGKAAGKVVKLNRS
IYGPKQASRAWHA
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mRNA from alignment at H-paniculata_contig4621:12632..12994-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4621.11544.1 ID=mRNA_H-paniculata_contig4621.11544.1|Name=mRNA_H-paniculata_contig4621.11544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=363bp|location=Sequence derived from alignment at H-paniculata_contig4621:12632..12994- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGGGAAGAAACTAATTGACTCTATGTGTTTGTACAAGTGGAAACAGGA
CCCAGATGGCATGGTAATTGGGGCTAAAGCTAGACTTGTAGCTCGAGGAG
ACAAGCAGGTCCATGGACAAAATTACGACAATACATTTGCCCCTACATCA
GCTATGTCAACTCTCAGAACAAGAATTGTAGTGGCGACTGAACTAGAATT
AGACATGTGTCTTCTCGACGTAGCCCAAGCCTTTATACAGAGCGAGTTGA
AAGATGGCATTCACCTGAGATTGACTGAGGGGTGCGGTAAAGCTGCGGGT
AAAGTGGTAAAATTAAATCGTTCAATCTACGGTCCCAAACAGGCCTCGAG
GGCTTGGCATGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig4621:12632..12994-

>mRNA_H-paniculata_contig4621.11544.1 ID=mRNA_H-paniculata_contig4621.11544.1|Name=mRNA_H-paniculata_contig4621.11544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig4621:12632..12994- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTTTGTACAAGTGGAAACAGGACCCAGATGGCATGGTAATTGGGGC
TAAAGCTAGACTTGTAGCTCGAGGAGACAAGCAGGTCCATGGACAAAATT
ACGACAATACATTTGCCCCTACATCAGCTATGTCAACTCTCAGAACAAGA
ATTGTAGTGGCGACTGAACTAGAATTAGACATGTGTCTTCTCGACGTAGC
CCAAGCCTTTATACAGAGCGAGTTGAAAGATGGCATTCACCTGAGATTGA
CTGAGGGGTGCGGTAAAGCTGCGGGTAAAGTGGTAAAATTAAATCGTTCA
ATCTACGGTCCCAAACAGGCCTCGAGGGCTTGGCATGCTATGTGTTTGTA
CAAGTGGAAACAGGACCCAGATGGCATGGTAATTGGGGCTAAAGCTAGAC
TTGTAGCTCGAGGAGACAAGCAGGTCCATGGACAAAATTACGACAATACA
TTTGCCCCTACATCAGCTATGTCAACTCTCAGAACAAGAATTGTAGTGGC
GACTGAACTAGAATTAGACATGTGTCTTCTCGACGTAGCCCAAGCCTTTA
TACAGAGCGAGTTGAAAGATGGCATTCACCTGAGATTGACTGAGGGGTGC
GGTAAAGCTGCGGGTAAAGTGGTAAAATTAAATCGTTCAATCTACGGTCC
CAAACAGGCCTCGAGGGCTTGGCATGCT
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