mRNA_H-paniculata_contig4620.11542.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4620.11542.1
Unique NamemRNA_H-paniculata_contig4620.11542.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4620.11542.1 vs. uniprot
Match: A0A6H5K591_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K591_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.400e-26
Identity = 84/175 (48.00%), Postives = 105/175 (60.00%), Query Frame = 1 
Query:   22 QEASAVQRAKRALKEQLNLRGEAARKAQKLRDEQALALAEAADSGVGDDGGGEGRGDGRRREFATR-ELAELEERIGTGSMVIQNLQAFLVSAGRNRTATGS----------------GTARWSRLRTAWDNKTALSILLAEAVKAKVIGMDFAENSSVKDMELRSLAREVSTLR 495
            +E +AVQRAKRALK QL LRGEAA +AQ+LR+          D+   ++G   G G     E   + EL  LE RI T S      + FLVS  R  TA  S                G ARW+R+RTAWD+KTALS+L +EAVK KV+GMDFAE+S++KDME+R L RE S+LR
Sbjct:  103 EEDTAVQRAKRALKAQLKLRGEAAGRAQELRE----------DAARDEEGVAAGAGAEMESEHCRQGELEALEGRIATAS------KTFLVSTDRKNTAPASRLAAGVSTTAATGGAAGAARWARVRTAWDSKTALSLLFSEAVKFKVLGMDFAESSALKDMEVRRLLRENSSLR 261
[Close]
BLAST of mRNA_H-paniculata_contig4620.11542.1 vs. uniprot
Match: D8LMX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX1_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.920e-20
Identity = 71/152 (46.71%), Postives = 90/152 (59.21%), Query Frame = 1 
Query:   22 QEASAVQRAKRALKEQLNLRGEAARKAQKLRDEQAL---ALAEAADSGVGDDGGGEGRGDGRRREFATRELAELEERIGTGSMVIQNLQAFLVSAGRNRTATGS----------------GTARWSRLRTAWDNKTALSILLAEAVKAKVIG 420
            +E +AVQRAKRALK QL LRGEAA +AQ+LR++ A     +A  A++    +G  +G            EL  LEERI T S  I++LQ FLVS  R  TA  S                GT RW+R+RTAWD+KTALS+L +EAVK KV+G
Sbjct:  959 EEDTAVQRAKRALKAQLKLRGEAAGRAQELREDAARDEEGVARGAEAETESEGCPQG------------ELEALEERIATASKAIKSLQTFLVSTDRKNTAPASRLAAGVSTTAAAGGAAGTTRWARVRTAWDSKTALSLLFSEAVKFKVLG 1098
[Close]
BLAST of mRNA_H-paniculata_contig4620.11542.1 vs. uniprot
Match: A0A835YYL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYL2_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.340e-9
Identity = 58/168 (34.52%), Postives = 85/168 (50.60%), Query Frame = 1 
Query:   16 VTQEASAVQRAKRALKEQLNLRGEAARKAQKLRDEQALALAEAADSGVGDDGGGEGRGDGRRREFAT-------RELAELEERIGTGSMVIQNLQAFLVSAGRNRTATGSGTA--RWSRLRTAWDNKTALSILLAEAVKAKVIGMDFAENSSVKDMELRSLAREVSTL 492
            + +EA+A+QRA+RAL  QL LR EAA K              A D+G G    G                    R   E+EER    S VI++LQ ++V+  R     G G A  RW+RLR++W+ K  ++ LL+ AV A+V G++ AE ++++D E      EV+ L
Sbjct:  872 LVEEAAALQRARRALGAQLELRAEAAAKLH------------AVDNGAGRSTAGXXXXXXXXXXXXXXXXXXXXRLRTEVEER----SAVIKSLQEYVVAGQREEGGEGGGKASSRWARLRSSWEMKVVMTHLLSRAVCARVTGLEAAEGAAMRDHEAAQARSEVARL 1023
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4620.11542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K591_9PHAE1.400e-2648.00SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMX1_ECTSI2.920e-2046.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YYL2_9STRA2.340e-934.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4620contigH-paniculata_contig4620:6079..7750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue1.4e-19
Seed eggNOG ortholog2880.D8LMX1
KEGG koko:K10395
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0244@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons3
Model size593
Cds size591
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4620.11542.1prot_H-paniculata_contig4620.11542.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4620 6079..7750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930380.4646058-CDS-H-paniculata_contig4620:6078..62501622930380.4646058-CDS-H-paniculata_contig4620:6078..6250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4620 6079..6250 -
1691481265.8072538-CDS-H-paniculata_contig4620:6078..62501691481265.8072538-CDS-H-paniculata_contig4620:6078..6250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4620 6079..6250 -
1622930380.4839056-CDS-H-paniculata_contig4620:6692..68501622930380.4839056-CDS-H-paniculata_contig4620:6692..6850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4620 6693..6850 -
1691481265.8202415-CDS-H-paniculata_contig4620:6692..68501691481265.8202415-CDS-H-paniculata_contig4620:6692..6850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4620 6693..6850 -
1622930380.4986863-CDS-H-paniculata_contig4620:7489..77501622930380.4986863-CDS-H-paniculata_contig4620:7489..7750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4620 7490..7750 -
1691481265.8304696-CDS-H-paniculata_contig4620:7489..77501691481265.8304696-CDS-H-paniculata_contig4620:7489..7750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4620 7490..7750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4620.11542.1

>prot_H-paniculata_contig4620.11542.1 ID=prot_H-paniculata_contig4620.11542.1|Name=mRNA_H-paniculata_contig4620.11542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp
MVVFFVTQEASAVQRAKRALKEQLNLRGEAARKAQKLRDEQALALAEAAD
SGVGDDGGGEGRGDGRRREFATRELAELEERIGTGSMVIQNLQAFLVSAG
RNRTATGSGTARWSRLRTAWDNKTALSILLAEAVKAKVIGMDFAENSSVK
DMELRSLAREVSTLRLAATRRPAGLGGAREAMAAAVAAATEAVEAVG
back to top

mRNA from alignment at H-paniculata_contig4620:6079..7750-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4620.11542.1 ID=mRNA_H-paniculata_contig4620.11542.1|Name=mRNA_H-paniculata_contig4620.11542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1672bp|location=Sequence derived from alignment at H-paniculata_contig4620:6079..7750- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGTGTTTTTCGTCACGCAGGAAGCATCGGCAGTGCAGCGAGCGAA
GCGCGCTCTCAAGGAGCAGCTGAATCTCCGGGGAGAGGCCGCGCGTAAGG
CACAGAAACTGCGCGACGAACAAGCCCTAGCTCTAGCGGAAGCAGCCGAC
AGTGGTGTTGGTGATGATGGTGGCGGCGAGGGGCGAGGGGACGGTAGAAG
GAGAGAGTTCGCCACGAGGGAGCTCGCCGAATTGGAGGAGAGAATTGGCA
CTGGTTCGATGGTGTGTGCTAGGGATGGGCTGATTTTGTGACTGATTCGT
TTGTATCTGGTGGACTGGAGTGCAGCGGAGTATCGCTGACGCGCGTATTA
TTGCTCCCTTCCGGGGTTATGCGTTTGAGGAAGTCACTTATCCTCGTTTA
TCTAAAGGGGGCTTTGTTCTGTGGGTTGGTTGATCAGTACGTGGGTGTTG
ACAGGGAGTGTTGCCTCTTGGGGACAAGGTGTTTCTATTTGTTTGAGAGT
TGATGGCAAAGGATATCTGACTTGGAGAATCGGGACCCGCGAACAGATGA
GAATGCGGTGAAGTGTTGGAAAAGTCAAGTTACCTTCTCTCATTGTCGCT
GTCGCCGTGTGTCTTCATTGTTTATTGTGAGTTGGTGGCATGCACTGCGC
GTTCATTCCGCCCCCGAAGCTATTAGTTGTAAGTACATACGACGATGGAA
CCAGTATGTTAGCGTTTGCTTCGCCCGCGTTGAAAGAGAACATTTACCTG
TACCGCACGAGGAATGAAGTTAAATTACTTGCTGGAACCCACGTCTATTT
ATTTCACGCCTTCCCTATTCAGTCCACACCCCCCGCTTGCTCACCGACCG
TAGCGTATGCATGCATGTGTGCGTCCCCCCCCTCAATCCTGGTCCTACAG
GTGATCCAGAATCTGCAGGCGTTCTTGGTTTCAGCCGGCAGGAATCGCAC
TGCCACCGGGTCCGGGACTGCGCGGTGGTCACGCCTGCGAACCGCGTGGG
ACAACAAAACAGCCCTGTCGATCCTCCTGGCCGAGGCCGTCAAGGCCAAG
GTTATCGGGTGAGGGCAGAGTGCCGATCAGAAAACGGCGCGGAATGTGTT
GATTTGGTATACTCTGAAAAGTGTATATATATGCCGCGTATATTTTATTC
ATTTATTGCGCGTTTCGAGGAGCAAGCGGAGCTCGCAGCGGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGTCTTACTATCGAGACGGCGCAATCCGTTT
TTTCTTTTCCTGTTTTAATCCATCACTCAAGACCAGCGATCAGATTTTTT
TGGTGTGCTTTTAGGCGAGATGACACCCCCCCCCGGATGTACACAGTATG
ACGCAATGGGAAGCACTTCTCTTACCTGAACAACAACAAACACGCCCTCT
GATTTTCTTGTGGCACTCAAGCGACGTCCGATATCTCACAGAAAACCCTC
TCATGCCCACTCAACGATAACCCGGACCCCTCGTCGGCCCCCCGCTGCAG
GATGGATTTCGCCGAAAATTCGTCGGTCAAGGACATGGAACTGCGCAGTC
TTGCGCGCGAAGTCTCCACTTTGCGATTGGCAGCGACCAGGCGGCCTGCG
GGGCTGGGCGGCGCGCGCGAAGCGATGGCCGCTGCGGTCGCAGCTGCCAC
CGAAGCTGTGGAAGCCGTGGGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4620:6079..7750-

>mRNA_H-paniculata_contig4620.11542.1 ID=mRNA_H-paniculata_contig4620.11542.1|Name=mRNA_H-paniculata_contig4620.11542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at H-paniculata_contig4620:6079..7750- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGTGTTTTTCGTCACGCAGGAAGCATCGGCAGTGCAGCGAGCGAA
GCGCGCTCTCAAGGAGCAGCTGAATCTCCGGGGAGAGGCCGCGCGTAAGG
CACAGAAACTGCGCGACGAACAAGCCCTAGCTCTAGCGGAAGCAGCCGAC
AGTGGTGTTGGTGATGATGGTGGCGGCGAGGGGCGAGGGGACGGTAGAAG
GAGAGAGTTCGCCACGAGGGAGCTCGCCGAATTGGAGGAGAGAATTGGCA
CTGGTTCGATGATGGTGGTGTTTTTCGTCACGCAGGAAGCATCGGCAGTG
CAGCGAGCGAAGCGCGCTCTCAAGGAGCAGCTGAATCTCCGGGGAGAGGC
CGCGCGTAAGGCACAGAAACTGCGCGACGAACAAGCCCTAGCTCTAGCGG
AAGCAGCCGACAGTGGTGTTGGTGATGATGGTGGCGGCGAGGGGCGAGGG
GACGGTAGAAGGAGAGAGTTCGCCACGAGGGAGCTCGCCGAATTGGAGGA
GAGAATTGGCACTGGTTCGATGGTGATCCAGAATCTGCAGGCGTTCTTGG
TTTCAGCCGGCAGGAATCGCACTGCCACCGGGTCCGGGACTGCGCGGTGG
TCACGCCTGCGAACCGCGTGGGACAACAAAACAGCCCTGTCGATCCTCCT
GGCCGAGGCCGTCAAGGCCAAGGTTATCGGGTGATCCAGAATCTGCAGGC
GTTCTTGGTTTCAGCCGGCAGGAATCGCACTGCCACCGGGTCCGGGACTG
CGCGGTGGTCACGCCTGCGAACCGCGTGGGACAACAAAACAGCCCTGTCG
ATCCTCCTGGCCGAGGCCGTCAAGGCCAAGGTTATCGGGATGGATTTCGC
CGAAAATTCGTCGGTCAAGGACATGGAACTGCGCAGTCTTGCGCGCGAAG
TCTCCACTTTGCGATTGGCAGCGACCAGGCGGCCTGCGGGGCTGGGCGGC
GCGCGCGAAGCGATGGCCGCTGCGGTCGCAGCTGCCACCGAAGCTGTGGA
AGCCGTGGGTGATGGATTTCGCCGAAAATTCGTCGGTCAAGGACATGGAA
CTGCGCAGTCTTGCGCGCGAAGTCTCCACTTTGCGATTGGCAGCGACCAG
GCGGCCTGCGGGGCTGGGCGGCGCGCGCGAAGCGATGGCCGCTGCGGTCG
CAGCTGCCACCGAAGCTGTGGAAGCCGTGGGT
back to top