mRNA_H-paniculata_contig4620.11543.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4620.11543.1
Unique NamemRNA_H-paniculata_contig4620.11543.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4620.11543.1 vs. uniprot
Match: D8LMX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX1_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 1.250e-32
Identity = 93/144 (64.58%), Postives = 101/144 (70.14%), Query Frame = 1 
Query:   52 AREAERLRSEVAEAKQRRTELQRVHREASTRFQKETRQLHLNEARMRRDGERMQWQVKKLQESQNKTQAALKRKMEEHSMAMRKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--DVKEAKKSELTTWLAAEIEEASAVQRAK 477
            A+EAERLR         R ELQR HREASTRF KETRQLHL +ARMRRDGERMQWQVKKLQESQ +TQAALKRKMEEHSMAM+K+                 XXXXXXX        VKEAKK+E+  WLA EIEE +AVQRAK
Sbjct:  825 AKEAERLRXXXXXXXXXRAELQRTHREASTRFMKETRQLHLKDARMRRDGERMQWQVKKLQESQERTQAALKRKMEEHSMAMKKVRTLQSHRTGGRGGIGDGXXXXXXXRGDARHPSVKEAKKAEMEAWLATEIEEDTAVQRAK 968
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BLAST of mRNA_H-paniculata_contig4620.11543.1 vs. uniprot
Match: A0A6H5K591_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K591_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 8.880e-24
Identity = 72/111 (64.86%), Postives = 79/111 (71.17%), Query Frame = 1 
Query:  151 KETRQLHLNEARMRRDGERMQWQVKKLQESQNKTQAALKRKMEEHSMAMRKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--DVKEAKKSELTTWLAAEIEEASAVQRAK 477
            KETRQLHL +ARMRRDGERMQWQVKKLQESQ +TQAALKRKMEEHSMAM+K+                  XXXXXX        VKEAKK+E+  WLA EIEE +AVQRAK
Sbjct:    2 KETRQLHLKDARMRRDGERMQWQVKKLQESQERTQAALKRKMEEHSMAMKKVRALQSHRTGGRGGIGDGAXXXXXXRGDARHPSVKEAKKAEMEAWLATEIEEDTAVQRAK 112
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BLAST of mRNA_H-paniculata_contig4620.11543.1 vs. uniprot
Match: A0A835YYL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYL2_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 9.270e-15
Identity = 72/155 (46.45%), Postives = 100/155 (64.52%), Query Frame = 1 
Query:   34 KERAVAAREAERLRSEVAEAKQRRTELQRVHREASTRFQKETRQLHLNEARMRRDGERMQWQVKKLQESQNKTQAALKRKMEEHSMAMRKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-------VKEAKKSELTTWLAAEIEEASAVQRAK 477
            +ERA A REAERLR+EV EAK+RR  LQ+   + +   ++E  +  +  AR RR GER+QW+V+KLQE+  KTQA+L+RKMEEH+ A+RK+                  XXXXXXXXXXX        ++ A++ EL +W A  +EEA+A+QRA+
Sbjct:  729 RERAEACREAERLRAEVEEAKRRRAGLQKQMADDAAAHRRERHEAAVAAARGRRQGERLQWEVRKLQEAHAKTQASLRRKMEEHAAAIRKLRALTSNGRAPSAMDKSTSXXXXXXXXXXXXXXXXXXXMQVARRQELESWCAHLVEEAAALQRAR 883
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4620.11543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMX1_ECTSI1.250e-3264.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K591_9PHAE8.880e-2464.86SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YYL2_9STRA9.270e-1546.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4620contigH-paniculata_contig4620:7700..12480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue4.6e-29
Seed eggNOG ortholog2880.D8LMX1
KEGG koko:K10395
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0244@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons5
Model size479
Cds size477
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4620.11543.1prot_H-paniculata_contig4620.11543.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4620 7700..12480 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930380.3522804-CDS-H-paniculata_contig4620:7699..77261622930380.3522804-CDS-H-paniculata_contig4620:7699..7726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4620 7700..7726 -
1691481265.7409904-CDS-H-paniculata_contig4620:7699..77261691481265.7409904-CDS-H-paniculata_contig4620:7699..7726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4620 7700..7726 -
1622930380.3668303-CDS-H-paniculata_contig4620:8334..84811622930380.3668303-CDS-H-paniculata_contig4620:8334..8481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4620 8335..8481 -
1691481265.7531676-CDS-H-paniculata_contig4620:8334..84811691481265.7531676-CDS-H-paniculata_contig4620:8334..8481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4620 8335..8481 -
1622930380.381223-CDS-H-paniculata_contig4620:9952..100361622930380.381223-CDS-H-paniculata_contig4620:9952..10036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4620 9953..10036 -
1691481265.7623188-CDS-H-paniculata_contig4620:9952..100361691481265.7623188-CDS-H-paniculata_contig4620:9952..10036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4620 9953..10036 -
1622930380.3946402-CDS-H-paniculata_contig4620:11085..111811622930380.3946402-CDS-H-paniculata_contig4620:11085..11181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4620 11086..11181 -
1691481265.7752216-CDS-H-paniculata_contig4620:11085..111811691481265.7752216-CDS-H-paniculata_contig4620:11085..11181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4620 11086..11181 -
1622930380.4186444-CDS-H-paniculata_contig4620:12357..124801622930380.4186444-CDS-H-paniculata_contig4620:12357..12480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4620 12358..12480 -
1691481265.7947626-CDS-H-paniculata_contig4620:12357..124801691481265.7947626-CDS-H-paniculata_contig4620:12357..12480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4620 12358..12480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4620.11543.1

>prot_H-paniculata_contig4620.11543.1 ID=prot_H-paniculata_contig4620.11543.1|Name=mRNA_H-paniculata_contig4620.11543.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
RKKVAEHQRAEKERAVAAREAERLRSEVAEAKQRRTELQRVHREASTRFQ
KETRQLHLNEARMRRDGERMQWQVKKLQESQNKTQAALKRKMEEHSMAMR
KMRKLETQKLKGARGGGGGSDGMAGAGPSDPDVKEAKKSELTTWLAAEIE
EASAVQRAK
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mRNA from alignment at H-paniculata_contig4620:7700..12480-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4620.11543.1 ID=mRNA_H-paniculata_contig4620.11543.1|Name=mRNA_H-paniculata_contig4620.11543.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4781bp|location=Sequence derived from alignment at H-paniculata_contig4620:7700..12480- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAAGAAGGTCGCTGAGCACCAGAGGGCAGAGAAGGAGCGGGCGGTGGC
AGCAAGAGAGGCCGAACGGCTCAGGAGCGAAGTAGCAGAAGCCAAGCAGC
GCAGGACGGAATTACAGCGAGTGGTAAGAGAGGTCTTGCTTCTGTACATC
CTGCAATGCAAGTACGCTCTAAGTCTTGATAGATATGTTATTTGCATATG
TTGAAGTTTTCCCCAAGGTAACAAAAAGGTCTTTACTGTCACCATGGCTC
TACTACCGGTATAGAGATGCTACTGGGTGATGGCTTGACGCTGGATAAAA
AGGATTGGTTGAATTTCTCCCGTCGTACCGGGTTACGTTGTATCGAATGT
TTCATGAATCGCCTGCCTGTCCCTACAAAAAAAAATGAAAGGCACGTTAG
CAAAAGTTGATTTAAGTGTGAGTCGTGCAGCATCGTGAACTATGGTATTT
TAACTTGGGCAGAATTGTTTTCAGTTGTATAATCGTTGAAAAAGTTCAAC
ACGTTGTCGAGCGTGGTTAACCTTTCTTGTCAAAGTGTAGGGTAGGGGGG
GGGGGGGGAGCGGTCAAGTGTTTGACGATTGTCGCTTCGCAAAAGCGGTG
CAAAAATAATGCGAATCAAAACCATGCCAATTTGCATGTATTGTTTGTGC
ATCCCTAAAGGTGCACAGTCCACGAGTTGAAATGGGATTTCTGTTCAACG
GGGGTGAGCAACAATTACATAAAAAACAGAAAGCGAATGCCCGATCACCT
TCTCAAAGCGGTTCCGTTAAACAACACGACTCCAATACCTAACGTAAAAT
AAGTCATCGACTGGAGCTTTTGTGTGTGTATACATATATATATATTCTCC
AACGTGTCTCGAATTGCCTTACAGGTCAGAGGCGCGTATAGGGGTGGGGG
TGATGTGGAGAGCACGTTTCTGATCTTCCTGGGGTTCCTGAACCCCGGCC
TCCTGCACACTAACGGCATCTTTTGCTTTTCTCGGAACAGCTTTTATATG
TGTGTCTGACCCTGGATGACCACTTGATATAAAACACACACATACACACA
TATATACATACCAAGAAGATCGGTTGGGCTCGTAAGGTTAGTTTGGAAAA
TGTCTTGAGATTAGAGTGCATCGAGTCTCGTCATCTTCAAATGCGGTATC
ACTGTGCATGCATACAACTGAATTTGAGCAATCGCATTCGCTTTTTCCCC
CCTTTTTTTTTTTCATATGAAATAAATGCTTCCCCCCCCCTCCCTACATT
TTGGTTTTATTTCATTTTATATCTTGTGTATCAACGCGTGCAATAACAGC
ACCGGGAGGCATCCACCCGATTCCAAAAGGAGACCCGACAGCTTCATCTC
AACGAGGCAAGGATGCGCCGTGACGGGGAACGCATGCAGTGGCAGGTGAA
CAATTTTTCCAGCACACGATGCGGTTCGGCCTGCCTCCAAGTCTTGGTCG
TATGGATGTACATGGTTATACTTTCTCAAACTAGTTTACTTGATGAAAAT
TGAGATTCCCGGCTACATACAGTACCTTGCCCCCTTGAGATGAATTCTTA
TTTCAGGTGAGGCTCGAAACCCTTAGCCTCATTTTAGGTCGAACATTACC
CAAATTATCAGTCTTTATCCTTTGTATGTTATGAAGTAGGGTGGGGTCAC
CGGCTAAGCACATTTTTCGGCGGCGGCGGCGGCGGGGGGCGCGGGGGGGG
GAACTTACTATATACAAAATGAATAAATGGTGCTTCAAATGTTGTACAAG
TACACCAAGTTGGCTGTTTTCTTGTGGGCGGTCCGGCATTGTTGAAGACA
AGCAGCTGACCCTTAGTCGGATAGGTGATGACTGCAATGGAGCATGAACT
GCCAACTGAATGGTTGATCGTTCGTTTGTTACCTTGATGAAAGGGATAGC
ATATGGGTAGCTAGCTCTATAGGGGCGTCTTTTCTCCTCTTTCACCTGGA
TAGTCATCCTACAGTGTTTTATCAAACCCACGAAAGATTGTCAAAAGCCC
TTGTTGGAGGTGAGATAACAGCATGGCCATGCACGGAACGAATTGCTAGG
CTAATTTTTCTTACTATTATTCTTGCATCGCTTGCCCCTCCCCCCCCCTC
TCTCGTTTCGTTGTGTCCAATATACGGTGTCGGCCGTGAACGAAGGAGGT
GTCGTATCGTAGCCATGTCCCCCGTGTATGCTCGCTAGCATTTCAATGAC
CTCGAGCAGCGTAAGTTCTCCATCTTACACGATTTTGTGCCTGTTCGGGC
GTTTTTCATTTTAACGCTTCATGGTTAGCGGTGGTGTTCAATTATCTCTA
CCGAGGTATATAGCTATAGCTGCTGCAACAGATGAAACAACAAGGGGTTG
CGTTTGTCGCACATGTAGAGTTGTTTTTTGTCCATCATCAGCGTGGTTTC
GCCCTATTGGGTCTGTGTGCCCTTTTTTTTCGCTTGACAAACAGGTGAAA
AAGCTCCAGGAATCTCAAAACAAGACACAAGCCGCCTTGAAGCGCAAAAT
GGAGGAGCACTCCATGGCCATGCGCAAGGTGAAATCAACACGCGAGCTTC
ACTGTGGCCTTTTGCGACAACGAAGATTCGCGCGGCAGCCCCCGCCGTTC
TTTATGTAGTTTGCTGACAACTGTGCACAACCGAAGTTTGTGGGCAGCTG
CATAACCTCAACACCCCTCGTTATTGGTCATGATGTATTTTTTTTTATAC
GTTTAAACAACTATAATGTGAAGTCAGCTGCATAACCTCAACACCCCTCC
CTACTGGTCATGATATAATTTTTCTGATACGTTTAAACAACTAAAGTGTG
AAGTCAGCTGCACAACCTCAACACCTCCCCTTACTGGTTATTATCTAATT
TTGCTGATGAGTGTAAACACCTCAAGTGTGAAGTCAGCTTCATAACCTTA
ACATGCATACAGTGTAGTGGTTGTGGGAGCTGTAGAGCTGCAGTTCAACT
GACTATAGCAACCTTCCCCCCCCCCCTTTGCCCCTCCGGGAAATGACTAC
TCTCCCCTTACTTATTTTTTCAAATTCTTATATTTGTTTGAAGCAATGGA
TTTGGTTATTAACGCGACCAAGTAAACGAAACCACAAACTGAGGAGGTTA
CGAACTCTCTGGGTCTGAAAAGTTACTTCGTGTGCCCGTAAGTTGTACTC
ATAGTGGTACTTTCCGTTCGAGCGTCAACCATGGCGCAGTCGTTCCGATC
CCCCGCAACGGACAATTTCCCCCGCCTCTTATCGGTTGTCTGATGCATCC
TTATCATGGCCCCTGGTCGCCTCGCGTTAGGCAGCTCTTTATCCAGGAGG
AAATTACTATTCGGCATGTGCTCGAAGCTCTACCGCTTTCTCTACCGTAC
ATGTGTGTATATATATGTGGCCGGCTGAAAACAACGCTGCAAAGTTGGCT
TGCAACGCTGCACGTGCCAGTTGTTACCCTTCGCGACGTTTTGTACGTAA
TATTGCACATATATAGGGAAGGTGATACGTCGTGCACATCTTGAAATTAT
TTTTGTTCTTTCGTTGCGTCAAGGCCATGTCGCATTTCCTACGCGGACCG
TGTCCACCTAGATACATACCCGGTACTGCACATCTACACGCGCCTAGATA
TATATATATATATATATTTTTTTTTTTCAGCGTGAATGTCACGTCGAATT
GTCTCACTATTTAATGTACTGCATCATAATAAAGTTTGGCCACGGCTACG
CTGATAACCCATGCAGTTCGTTGCTTGTCCTCTAGCAAGTGGACGTCGCT
GCGCTTGCTTTGGGGGCTCGCGTTTCGAATATACAATGATCGCTGCCCTC
GCGATGGCTCGTTATATGACGCTCGCCTGAAGAGTTGTTTATCAGGGTAT
ACTTGATTAGGTACTCGAACAGCTGTTTCGAAATGACAGCGCTGGACAAC
GACTATCACCACCTTCGACCTTGCCCCAATAAATAATGACGATTTTCTGA
CGGCGTGATGTGTATCTTGAATGTTTCGATGGGTCGGTCTATCGGTCAGA
TGCGAAAGCTGGAAACCCAGAAACTCAAGGGCGCACGCGGGGGTGGAGGG
GGCAGCGATGGAATGGCGGGAGCTGGCCCTTCGGATCCAGACGTGAAGGA
GGCCAAGAAGTCCGAACTAACCACCTGGTTAGCCGCCGAGATAGAGGTGC
GCACGTGCATCGGGGTGTTCCGTTTTGAAGATGATATGCGAAAACAGTTC
AATTCGTATAATTTATTGCTCAAGTGCGTGTTTGATGTGGTATGCTTTGT
GCGGCCATATGAGATAGATGTGAACAGGAATCAACGTATAACGTGTAATG
CACTTCTGTCGTTGAGTTACGATGATCGGTCCATCCATCGTTTGTTACCT
GATCGAGCTGCAAAAAATATAGCAGTGTCCAAAGGGTTCGAGGATACACT
TACATTATAGTGTTTTTCAATCTCAATGTTCCTCGATAAGCGAAAAGTTG
TTGCACTGTCCTAAGAGCATCATGTCTCATCTAACGTTCGTTACACATCT
CGATGATGGATTTCCCAGAGTCATGATCTTGGGTCGCCACCTTCAGCATT
GTTGGTAGTAGCATGACACAGTAGCTTGTTTTCGGCGAAAGTTGTCGATG
TCGTCAGGAAAAATAAATTCATCACCTACCTGGTGTTTGTATTTTCTTGT
ACATCTCAAACAACTTCTCCTGCTCTGTTTCTCTCTTCTTTTCTTTGCAC
ACCTCTCTGTGCTGTATCTAAATACTATGCATGGTGGTGTTTTTCGTCAC
GCAGGAAGCATCGGCAGTGCAGCGAGCGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4620:7700..12480-

>mRNA_H-paniculata_contig4620.11543.1 ID=mRNA_H-paniculata_contig4620.11543.1|Name=mRNA_H-paniculata_contig4620.11543.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig4620:7700..12480- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAAGAAGGTCGCTGAGCACCAGAGGGCAGAGAAGGAGCGGGCGGTGGC
AGCAAGAGAGGCCGAACGGCTCAGGAGCGAAGTAGCAGAAGCCAAGCAGC
GCAGGACGGAATTACAGCGAGTGAGAAAGAAGGTCGCTGAGCACCAGAGG
GCAGAGAAGGAGCGGGCGGTGGCAGCAAGAGAGGCCGAACGGCTCAGGAG
CGAAGTAGCAGAAGCCAAGCAGCGCAGGACGGAATTACAGCGAGTGCACC
GGGAGGCATCCACCCGATTCCAAAAGGAGACCCGACAGCTTCATCTCAAC
GAGGCAAGGATGCGCCGTGACGGGGAACGCATGCAGTGGCAGCACCGGGA
GGCATCCACCCGATTCCAAAAGGAGACCCGACAGCTTCATCTCAACGAGG
CAAGGATGCGCCGTGACGGGGAACGCATGCAGTGGCAGGTGAAAAAGCTC
CAGGAATCTCAAAACAAGACACAAGCCGCCTTGAAGCGCAAAATGGAGGA
GCACTCCATGGCCATGCGCAAGGTGAAAAAGCTCCAGGAATCTCAAAACA
AGACACAAGCCGCCTTGAAGCGCAAAATGGAGGAGCACTCCATGGCCATG
CGCAAGATGCGAAAGCTGGAAACCCAGAAACTCAAGGGCGCACGCGGGGG
TGGAGGGGGCAGCGATGGAATGGCGGGAGCTGGCCCTTCGGATCCAGACG
TGAAGGAGGCCAAGAAGTCCGAACTAACCACCTGGTTAGCCGCCGAGATA
GAGATGCGAAAGCTGGAAACCCAGAAACTCAAGGGCGCACGCGGGGGTGG
AGGGGGCAGCGATGGAATGGCGGGAGCTGGCCCTTCGGATCCAGACGTGA
AGGAGGCCAAGAAGTCCGAACTAACCACCTGGTTAGCCGCCGAGATAGAG
GAAGCATCGGCAGTGCAGCGAGCGAAGGAAGCATCGGCAGTGCAGCGAGC
GAAG
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