mRNA_H-paniculata_contig11803.1154.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11803.1154.1
Unique NamemRNA_H-paniculata_contig11803.1154.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11803.1154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11803contigH-paniculata_contig11803:448..624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size147
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928890.8710213-CDS-H-paniculata_contig11803:447..5941622928890.8710213-CDS-H-paniculata_contig11803:447..594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11803 448..594 -
1691480658.4261572-CDS-H-paniculata_contig11803:447..5941691480658.4261572-CDS-H-paniculata_contig11803:447..594Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11803 448..594 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928890.887278-UTR-H-paniculata_contig11803:594..6241622928890.887278-UTR-H-paniculata_contig11803:594..624Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11803 595..624 -
1691480658.4350924-UTR-H-paniculata_contig11803:594..6241691480658.4350924-UTR-H-paniculata_contig11803:594..624Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11803 595..624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11803.1154.1prot_H-paniculata_contig11803.1154.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11803 448..594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11803.1154.1

>prot_H-paniculata_contig11803.1154.1 ID=prot_H-paniculata_contig11803.1154.1|Name=mRNA_H-paniculata_contig11803.1154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
MVVLMQTGLSDGSKAVVDVCLFMLCTSWMRDDGGDPVKLLERFDVVSHE
back to top

mRNA from alignment at H-paniculata_contig11803:448..624-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11803.1154.1 ID=mRNA_H-paniculata_contig11803.1154.1|Name=mRNA_H-paniculata_contig11803.1154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig11803:448..624- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCCTGTCAAACTCCTACGGCCGCGGCAGATGGTGGTGCTGATGCAAAC
GGGTCTGTCCGACGGGTCTAAGGCGGTGGTGGACGTTTGCCTGTTCATGC
TGTGCACGAGCTGGATGAGGGACGATGGTGGTGACCCAGTCAAGCTTCTT
GAACGTTTCGACGTAGTCAGTCACGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11803:448..624-

>mRNA_H-paniculata_contig11803.1154.1 ID=mRNA_H-paniculata_contig11803.1154.1|Name=mRNA_H-paniculata_contig11803.1154.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig11803:448..624- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGTGCTGATGCAAACGGGTCTGTCCGACGGGTCTAAGGCGGTGGT
GGACGTTTGCCTGTTCATGCTGTGCACGAGCTGGATGAGGGACGATGGTG
GTGACCCAGTCAAGCTTCTTGAACGTTTCGACGTAGTCAGTCACGAGATG
GTGGTGCTGATGCAAACGGGTCTGTCCGACGGGTCTAAGGCGGTGGTGGA
CGTTTGCCTGTTCATGCTGTGCACGAGCTGGATGAGGGACGATGGTGGTG
ACCCAGTCAAGCTTCTTGAACGTTTCGACGTAGTCAGTCACGAG
back to top