mRNA_H-paniculata_contig462.11539.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig462.11539.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE) HSP 1 Score: 131 bits (330), Expect = 2.490e-33 Identity = 77/222 (34.68%), Postives = 126/222 (56.76%), Query Frame = 1
Query: 4 HQFLAHASQQITRDTAETAGVVLTGEWGACKGCSIAKAHRFVVPKKIDKRATWAAERLYVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIK-KSDVTAALQSYIAEYITPKGLK--IGAIRTDNGGEF-DGDSHLKLDEHGASHELTPSDTPQYNGVAERRLGLLRETTIALMQN--------QTEGSEKVWAAAMNYACDITKMSCTSSIEGNVTPYE 633
H AH+ + + R TA+ G L G+ AC GCS++KA R + ++ +R+ R++ DLGG + S+GG Y II+ DD++R + F++ KSD +A ++++A + G+ + +R+DNGG+F GD +E E TP+ +PQYNGVAER LGL+ E +A Q ++K+WA AM++AC+ + S+ +++PYE
Sbjct: 38 HNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLAS-VRANGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYE 258
BLAST of mRNA_H-paniculata_contig462.11539.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 133 bits (334), Expect = 1.250e-32 Identity = 79/223 (35.43%), Postives = 127/223 (56.95%), Query Frame = 1
Query: 4 HQFLAHASQQITRDTAETAGVVLTGEWGACKGCSIAKAHRFVVPKKIDKRATWAAERLYVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIK-KSDVTAALQSYIAEY---ITPKGLKIGAIRTDNGGEFDGDSHLKL-DEHGASHELTPSDTPQYNGVAERRLGLLRETTIALMQN--------QTEGSEKVWAAAMNYACDITKMSCTSSIEGNVTPYE 633
H AH+ + + R TA+ G L G+ AC GCS++KA R + ++ +R+ R++VDLGG + S+GG Y +I+ DD++R + F+K +SD A ++++A I P ++I +R+DNGGEF G + +E E TP+ +PQYNGVAER LGL+ E +A Q ++K+WA AM++AC+ + S+ +++PYE
Sbjct: 258 HNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYE 478
BLAST of mRNA_H-paniculata_contig462.11539.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE) HSP 1 Score: 132 bits (332), Expect = 6.050e-32 Identity = 80/216 (37.04%), Postives = 119/216 (55.09%), Query Frame = 1
Query: 19 HASQQITRDTAETAGVVLTGEWGACKGCSIAKAHRFVVPKKIDKRATWAAERLYVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIK-KSDVTAALQSYIAEYIT---PKGLKIGAIRTDNGGEF-DGDSHLKLDEHGASHELTPSDTPQYNGVAERRLGLLRETTIAL-MQNQT-----EGSEKVWAAAMNYACDITKMSCTSSIEGNVTPYE 633
H+ + + R TA+ G L GE C GCS AK +P K RA +R++VDL G RV SLGG Y +I+ DDY+R+ V F+K KSD A + Y+AE P + + +R+DNGGEF +G+ ++ E TP+ +P+YNGVAER LGL+++ +A +Q T +WA A+ ++C+ + T+S +PYE
Sbjct: 684 HSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYE 897
BLAST of mRNA_H-paniculata_contig462.11539.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 132 bits (332), Expect = 6.080e-32 Identity = 80/216 (37.04%), Postives = 119/216 (55.09%), Query Frame = 1
Query: 19 HASQQITRDTAETAGVVLTGEWGACKGCSIAKAHRFVVPKKIDKRATWAAERLYVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIK-KSDVTAALQSYIAEYIT---PKGLKIGAIRTDNGGEF-DGDSHLKLDEHGASHELTPSDTPQYNGVAERRLGLLRETTIAL-MQNQT-----EGSEKVWAAAMNYACDITKMSCTSSIEGNVTPYE 633
H+ + + R TA+ G L GE C GCS AK +P K RA +R++VDL G RV SLGG Y +I+ DDY+R+ V F+K KSD A + Y+AE P + + +R+DNGGEF +G+ ++ E TP+ +P+YNGVAER LGL+++ +A +Q T +WA A+ ++C+ + T+S +PYE
Sbjct: 519 HSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYE 732
BLAST of mRNA_H-paniculata_contig462.11539.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 132 bits (332), Expect = 6.100e-32 Identity = 80/216 (37.04%), Postives = 119/216 (55.09%), Query Frame = 1
Query: 19 HASQQITRDTAETAGVVLTGEWGACKGCSIAKAHRFVVPKKIDKRATWAAERLYVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIK-KSDVTAALQSYIAEYIT---PKGLKIGAIRTDNGGEF-DGDSHLKLDEHGASHELTPSDTPQYNGVAERRLGLLRETTIAL-MQNQT-----EGSEKVWAAAMNYACDITKMSCTSSIEGNVTPYE 633
H+ + + R TA+ G L GE C GCS AK +P K RA +R++VDL G RV SLGG Y +I+ DDY+R+ V F+K KSD A + Y+AE P + + +R+DNGGEF +G+ ++ E TP+ +P+YNGVAER LGL+++ +A +Q T +WA A+ ++C+ + T+S +PYE
Sbjct: 532 HSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYE 745
BLAST of mRNA_H-paniculata_contig462.11539.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 132 bits (332), Expect = 6.130e-32 Identity = 80/216 (37.04%), Postives = 119/216 (55.09%), Query Frame = 1
Query: 19 HASQQITRDTAETAGVVLTGEWGACKGCSIAKAHRFVVPKKIDKRATWAAERLYVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIK-KSDVTAALQSYIAEYIT---PKGLKIGAIRTDNGGEF-DGDSHLKLDEHGASHELTPSDTPQYNGVAERRLGLLRETTIAL-MQNQT-----EGSEKVWAAAMNYACDITKMSCTSSIEGNVTPYE 633
H+ + + R TA+ G L GE C GCS AK +P K RA +R++VDL G RV SLGG Y +I+ DDY+R+ V F+K KSD A + Y+AE P + + +R+DNGGEF +G+ ++ E TP+ +P+YNGVAER LGL+++ +A +Q T +WA A+ ++C+ + T+S +PYE
Sbjct: 675 HSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYE 888
BLAST of mRNA_H-paniculata_contig462.11539.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 131 bits (329), Expect = 1.490e-31 Identity = 77/222 (34.68%), Postives = 126/222 (56.76%), Query Frame = 1
Query: 4 HQFLAHASQQITRDTAETAGVVLTGEWGACKGCSIAKAHRFVVPKKIDKRATWAAERLYVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIK-KSDVTAALQSYIAEYITPKGLK--IGAIRTDNGGEFDGDSHLKL-DEHGASHELTPSDTPQYNGVAERRLGLLRETTIALMQN--------QTEGSEKVWAAAMNYACDITKMSCTSSIEGNVTPYE 633
H AH+ + + R TA+ G L G+ AC GCS++KA R + + +R+ R++VDLGG + S+GG Y +I+ DD++R + F++ KSD +A ++++A + G+ + +R+DNGGEF G + +E E TP+ +PQYNGVAER LGL+ E +A Q ++K+WA AM++AC+ + S+ +++PYE
Sbjct: 191 HNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLAS-VRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYE 411
BLAST of mRNA_H-paniculata_contig462.11539.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 130 bits (328), Expect = 2.040e-31 Identity = 80/222 (36.04%), Postives = 123/222 (55.41%), Query Frame = 1
Query: 4 HQFLAHASQQITRDTAETAGVVLTGEWGACKGCSIAKAHRFVVPKKIDKRATWAAERLYVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIK-KSDVTAALQSYIAEYITPKGLK--IGAIRTDNGGEFDGDSHLKL-DEHGASHELTPSDTPQYNGVAERRLGLLRETTIALMQN--------QTEGSEKVWAAAMNYACDITKMSCTSSIEGNVTPYE 633
H AH+ + + R TA+ G L GE C GCS+AKA + + ++ R+ R++VDLGG V S+GG Y +I+ DD++R + F+K KSD A +S++A + G+ + +R+DNGGEF G + +E E TP+ +PQYNGVAER LGL+ E +A Q ++K+WA AM++AC+ + S+ + +PYE
Sbjct: 670 HNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLAS-VRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYE 890
BLAST of mRNA_H-paniculata_contig462.11539.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 130 bits (328), Expect = 2.050e-31 Identity = 80/222 (36.04%), Postives = 123/222 (55.41%), Query Frame = 1
Query: 4 HQFLAHASQQITRDTAETAGVVLTGEWGACKGCSIAKAHRFVVPKKIDKRATWAAERLYVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIK-KSDVTAALQSYIAEYITPKGLK--IGAIRTDNGGEFDGDSHLKL-DEHGASHELTPSDTPQYNGVAERRLGLLRETTIALMQN--------QTEGSEKVWAAAMNYACDITKMSCTSSIEGNVTPYE 633
H AH+ + + R TA+ G L GE C GCS+AKA + + ++ R+ R++VDLGG V S+GG Y +I+ DD++R + F+K KSD A +S++A + G+ + +R+DNGGEF G + +E E TP+ +PQYNGVAER LGL+ E +A Q ++K+WA AM++AC+ + S+ + +PYE
Sbjct: 377 HNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLAS-VRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYE 597
BLAST of mRNA_H-paniculata_contig462.11539.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 130 bits (327), Expect = 2.610e-31 Identity = 78/222 (35.14%), Postives = 125/222 (56.31%), Query Frame = 1
Query: 4 HQFLAHASQQITRDTAETAGVVLTGEWGACKGCSIAKAHRFVVPKKIDKRATWAAERLYVDLGGPMRVTSLGGSSYVIIIVDDYSRFQAVKFIK-KSDVTAALQSYIAEYITPKGLK--IGAIRTDNGGEFDGDSHLKL-DEHGASHELTPSDTPQYNGVAERRLGLLRETTIALMQN--------QTEGSEKVWAAAMNYACDITKMSCTSSIEGNVTPYE 633
H AH+ + + R TA+ G+ LTG+ AC GCS++KA + + + R+ R++VDLGG V S+GG Y +I+ DD++R + F+K KSD +A +S++A + G+ + +R+DNGGEF G + +E E TP+ +PQYNGVAER LGL+ +A Q ++++WA AM++AC+ + S+ + +PYE
Sbjct: 576 HNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLAS-VRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYE 796 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig462.11539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig462.11539.1 >prot_H-paniculata_contig462.11539.1 ID=prot_H-paniculata_contig462.11539.1|Name=mRNA_H-paniculata_contig462.11539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=213bp MHQFLAHASQQITRDTAETAGVVLTGEWGACKGCSIAKAHRFVVPKKIDKback to top mRNA from alignment at H-paniculata_contig462:610..1248- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig462.11539.1 ID=mRNA_H-paniculata_contig462.11539.1|Name=mRNA_H-paniculata_contig462.11539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=639bp|location=Sequence derived from alignment at H-paniculata_contig462:610..1248- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig462:610..1248- >mRNA_H-paniculata_contig462.11539.1 ID=mRNA_H-paniculata_contig462.11539.1|Name=mRNA_H-paniculata_contig462.11539.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig462:610..1248- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |