mRNA_H-paniculata_contig4619.11536.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4619.11536.1
Unique NamemRNA_H-paniculata_contig4619.11536.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4619.11536.1 vs. uniprot
Match: D8LHG9_ECTSI (Homoserine dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHG9_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 8.090e-25
Identity = 53/66 (80.30%), Postives = 56/66 (84.85%), Query Frame = 3 
Query:  159 SLPFTATTIPGIPIIHTMQGSYVGDEVTSVMGIMNGTTNFMLTKMEMEGADYAAVLKEAQDLGFAE 356
            +L + A    GIPIIH MQGSYVGD + SVMGIMNGTTNFMLTKME EGADYAAVLKEAQDLGFAE
Sbjct:  128 TLGYEAAVCGGIPIIHNMQGSYVGDSIQSVMGIMNGTTNFMLTKMETEGADYAAVLKEAQDLGFAE 193
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BLAST of mRNA_H-paniculata_contig4619.11536.1 vs. uniprot
Match: A0A835YR06_9STRA (Homoserine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR06_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.570e-21
Identity = 48/65 (73.85%), Postives = 52/65 (80.00%), Query Frame = 3 
Query:  162 LPFTATTIPGIPIIHTMQGSYVGDEVTSVMGIMNGTTNFMLTKMEMEGADYAAVLKEAQDLGFAE 356
            L + A    GIPII  +Q  YVGD +T V+GIMNGTTNFMLTKME EGADYAAVLKEAQDLGFAE
Sbjct:  129 LGYEAAVCGGIPIIAALQQDYVGDSITKVVGIMNGTTNFMLTKMEQEGADYAAVLKEAQDLGFAE 193
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BLAST of mRNA_H-paniculata_contig4619.11536.1 vs. uniprot
Match: A0A6V1RNX4_HETAK (Homoserine dehydrogenase n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RNX4_HETAK)

HSP 1 Score: 92.4 bits (228), Expect = 1.650e-19
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 3 
Query:  168 FTATTIPGIPIIHTMQGSYVGDEVTSVMGIMNGTTNFMLTKMEMEGADYAAVLKEAQDLGFAE 356
            + A    GIPIIHT+Q  Y+GD++  ++GIMNGTTNFMLTKME EGADYAAVL EAQ LG+AE
Sbjct:  206 YEAAVCGGIPIIHTLQNDYLGDKIRKILGIMNGTTNFMLTKMESEGADYAAVLAEAQALGYAE 268
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BLAST of mRNA_H-paniculata_contig4619.11536.1 vs. uniprot
Match: A0A6A4YYC0_9STRA (Homoserine dehydrogenase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YYC0_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.980e-19
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 3 
Query:  168 FTATTIPGIPIIHTMQGSYVGDEVTSVMGIMNGTTNFMLTKMEMEGADYAAVLKEAQDLGFAE 356
            + A+   GIPIIHT+Q SY GD +  + GIMNGTTN+ML+KME EGA Y AVLKEAQDLG+AE
Sbjct:  133 YEASVCGGIPIIHTLQSSYSGDVIKEIAGIMNGTTNYMLSKMETEGASYEAVLKEAQDLGYAE 195
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BLAST of mRNA_H-paniculata_contig4619.11536.1 vs. uniprot
Match: A0A067BV06_SAPPC (Homoserine dehydrogenase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BV06_SAPPC)

HSP 1 Score: 90.9 bits (224), Expect = 4.460e-19
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 3 
Query:  168 FTATTIPGIPIIHTMQGSYVGDEVTSVMGIMNGTTNFMLTKMEMEGADYAAVLKEAQDLGFAE 356
            + A+   GIPIIHT+Q SY GD +  + GIMNGTTN+ML+KME EGA Y AVLKEAQDLGFAE
Sbjct:  132 YEASVCGGIPIIHTLQSSYTGDGIQEIAGIMNGTTNYMLSKMEKEGASYDAVLKEAQDLGFAE 194
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BLAST of mRNA_H-paniculata_contig4619.11536.1 vs. uniprot
Match: A0A6G0WX43_9STRA (Homoserine dehydrogenase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WX43_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.530e-19
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 3 
Query:  168 FTATTIPGIPIIHTMQGSYVGDEVTSVMGIMNGTTNFMLTKMEMEGADYAAVLKEAQDLGFAE 356
            + A+   GIPIIHT+Q SY GD +  V GIMNGTTN+ML+KME EGA Y AVLKEAQDLGFAE
Sbjct:  132 YEASVCGGIPIIHTLQSSYSGDVIKEVAGIMNGTTNYMLSKMEKEGASYEAVLKEAQDLGFAE 194
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BLAST of mRNA_H-paniculata_contig4619.11536.1 vs. uniprot
Match: A0A1V9ZXW6_9STRA (Homoserine dehydrogenase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXW6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.550e-19
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 3 
Query:  168 FTATTIPGIPIIHTMQGSYVGDEVTSVMGIMNGTTNFMLTKMEMEGADYAAVLKEAQDLGFAE 356
            + A+   GIPIIHT+Q SY GD +  + GIMNGTTN+ML+KME EGA Y AVLKEAQDLGFAE
Sbjct:  132 YEASVCGGIPIIHTLQSSYTGDGIKEIAGIMNGTTNYMLSKMEKEGASYDAVLKEAQDLGFAE 194
[Close]
BLAST of mRNA_H-paniculata_contig4619.11536.1 vs. uniprot
Match: A0A485LM83_9STRA (Homoserine dehydrogenase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LM83_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.600e-19
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 3 
Query:  162 LPFTATTIPGIPIIHTMQGSYVGDEVTSVMGIMNGTTNFMLTKMEMEGADYAAVLKEAQDLGFAE 356
            L + A+   GIPIIHT+Q SY GD +  + GIMNGTTN+ML+KME EGA Y AVLKEAQDLGFAE
Sbjct:  132 LGYEASVCGGIPIIHTLQSSYSGDVIKEIAGIMNGTTNYMLSKMEKEGASYEAVLKEAQDLGFAE 196
[Close]
BLAST of mRNA_H-paniculata_contig4619.11536.1 vs. uniprot
Match: A0A7S4D8P3_HETAK (Homoserine dehydrogenase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8P3_HETAK)

HSP 1 Score: 89.7 bits (221), Expect = 5.800e-19
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 3 
Query:  168 FTATTIPGIPIIHTMQGSYVGDEVTSVMGIMNGTTNFMLTKMEMEGADYAAVLKEAQDLGFAE 356
            F A    GIPIIHT+Q  ++GD +  ++GIMNGTTN+MLTKME EGADYAAVL EAQ LG+AE
Sbjct:  205 FEAAVCGGIPIIHTLQNDFLGDNIRKLLGIMNGTTNYMLTKMESEGADYAAVLAEAQALGYAE 267
[Close]
BLAST of mRNA_H-paniculata_contig4619.11536.1 vs. uniprot
Match: A0A2D4BYK6_PYTIN (Homoserine dehydrogenase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYK6_PYTIN)

HSP 1 Score: 89.7 bits (221), Expect = 1.650e-18
Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 3 
Query:  168 FTATTIPGIPIIHTMQGSYVGDEVTSVMGIMNGTTNFMLTKMEMEGADYAAVLKEAQDLGFAE 356
            + A+   GIPIIHT+Q +Y GD++T + GIMNGTTN+ML+KME EG  Y AVLKEAQDLGFAE
Sbjct:  288 YEASVCGGIPIIHTLQNAYSGDDITEIAGIMNGTTNYMLSKMEHEGIAYDAVLKEAQDLGFAE 350
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4619.11536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHG9_ECTSI8.090e-2580.30Homoserine dehydrogenase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YR06_9STRA3.570e-2173.85Homoserine dehydrogenase n=1 Tax=Tribonema minus T... [more]
A0A6V1RNX4_HETAK1.650e-1968.25Homoserine dehydrogenase n=3 Tax=Heterosigma akash... [more]
A0A6A4YYC0_9STRA1.980e-1966.67Homoserine dehydrogenase n=1 Tax=Aphanomyces astac... [more]
A0A067BV06_SAPPC4.460e-1968.25Homoserine dehydrogenase n=3 Tax=Saprolegniaceae T... [more]
A0A6G0WX43_9STRA4.530e-1969.84Homoserine dehydrogenase n=1 Tax=Aphanomyces eutei... [more]
A0A1V9ZXW6_9STRA4.550e-1968.25Homoserine dehydrogenase n=1 Tax=Thraustotheca cla... [more]
A0A485LM83_9STRA4.600e-1967.69Homoserine dehydrogenase n=1 Tax=Aphanomyces stell... [more]
A0A7S4D8P3_HETAK5.800e-1966.67Homoserine dehydrogenase (Fragment) n=1 Tax=Hetero... [more]
A0A2D4BYK6_PYTIN1.650e-1866.67Homoserine dehydrogenase n=1 Tax=Pythium insidiosu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4619contigH-paniculata_contig4619:318..673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue4.6e-12
Seed eggNOG ortholog2880.D7FNL8
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Homoserine dehydrogenase
EggNOG OGs2QT5B@2759,COG0460@1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size356
Cds size147
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930379.6849167-UTR-H-paniculata_contig4619:317..5261622930379.6849167-UTR-H-paniculata_contig4619:317..526Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4619 318..526 +
1691481265.435046-UTR-H-paniculata_contig4619:317..5261691481265.435046-UTR-H-paniculata_contig4619:317..526Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4619 318..526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930379.7090685-CDS-H-paniculata_contig4619:526..6731622930379.7090685-CDS-H-paniculata_contig4619:526..673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4619 527..673 +
1691481265.4454393-CDS-H-paniculata_contig4619:526..6731691481265.4454393-CDS-H-paniculata_contig4619:526..673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4619 527..673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4619.11536.1prot_H-paniculata_contig4619.11536.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4619 527..673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4619.11536.1

>prot_H-paniculata_contig4619.11536.1 ID=prot_H-paniculata_contig4619.11536.1|Name=mRNA_H-paniculata_contig4619.11536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
MQGSYVGDEVTSVMGIMNGTTNFMLTKMEMEGADYAAVLKEAQDLGFAE
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mRNA from alignment at H-paniculata_contig4619:318..673+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4619.11536.1 ID=mRNA_H-paniculata_contig4619.11536.1|Name=mRNA_H-paniculata_contig4619.11536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=356bp|location=Sequence derived from alignment at H-paniculata_contig4619:318..673+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGCTTTTTATTGCCTTTCTTGTGGAGTTGAAAACAGGTGTTGGATGTT
TGTGCTCGTCGATACTGCTATCGAAAAATCACTTGGAGATTCGAAATGTA
AGAATCACTATGAGTACCTCTCTCCCTGTTTCCTGCTCCCTGTTCTCTCT
CCCTCCCCTCTCTGCCGTTCACCGCAACAACTATCCCAGGCATTCCTATT
ATCCATACCATGCAGGGTAGCTACGTGGGCGACGAGGTGACTTCCGTGAT
GGGGATAATGAATGGCACGACAAACTTCATGCTGACTAAGATGGAGATGG
AAGGCGCTGACTACGCGGCAGTCCTGAAGGAGGCCCAGGACCTCGGGTTC
GCAGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4619:318..673+

>mRNA_H-paniculata_contig4619.11536.1 ID=mRNA_H-paniculata_contig4619.11536.1|Name=mRNA_H-paniculata_contig4619.11536.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig4619:318..673+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGGTAGCTACGTGGGCGACGAGGTGACTTCCGTGATGGGGATAAT
GAATGGCACGACAAACTTCATGCTGACTAAGATGGAGATGGAAGGCGCTG
ACTACGCGGCAGTCCTGAAGGAGGCCCAGGACCTCGGGTTCGCAGAAATG
CAGGGTAGCTACGTGGGCGACGAGGTGACTTCCGTGATGGGGATAATGAA
TGGCACGACAAACTTCATGCTGACTAAGATGGAGATGGAAGGCGCTGACT
ACGCGGCAGTCCTGAAGGAGGCCCAGGACCTCGGGTTCGCAGAA
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