mRNA_H-paniculata_contig46103.11525.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46103.11525.1
Unique NamemRNA_H-paniculata_contig46103.11525.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: A0A2N9GEZ3_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GEZ3_FAGSY)

HSP 1 Score: 76.6 bits (187), Expect = 9.800e-15
Identity = 35/67 (52.24%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    7 GGSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQFC 207
            GG RF +IFVDDYSR  K+Y LR K EAL  L +++ +V      RI+R+R+D+GGEY   PF +FC
Sbjct:  293 GGKRFYVIFVDDYSRFTKLYLLRSKDEALEMLIKYKTEVENQKNKRIKRLRTDRGGEYESNPFSEFC 359          
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: A0A2I0V7V6_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0V7V6_9ASPA)

HSP 1 Score: 71.2 bits (173), Expect = 4.300e-14
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    1 SFGGSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQFC 207
            SFG  R+ + F+DDYSR   VY L++KSEA    K+F+    + +G  I+ IRSD+GGE+T K F+++C
Sbjct:   60 SFGKHRYFLTFIDDYSRKIWVYFLKEKSEAFTMFKKFKASTEKESGFLIKSIRSDRGGEFTSKAFKEYC 128          
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: A0A6G0JTE1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JTE1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.090e-13
Identity = 31/66 (46.97%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    7 GGSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQF 204
            GG  +A+ F+DD+SR   VY +++K+E L   K+FE D+  A G +I+R+RSD GGEYTG+ F+++
Sbjct:   61 GGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEY 126          
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: A0A6A4ASW4_9STRA (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4ASW4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.180e-13
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    7 GGSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQF 204
            GG  +A+ F+DD+SR   VY +++KSE L   K F+ D+  A G +I+RIRSD GGEYTG+ F+++
Sbjct:  132 GGCTYAVTFIDDFSRHVTVYFMKKKSEVLEKFKMFKADMENATGRKIKRIRSDNGGEYTGRIFKEY 197          
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: A0A4Y1RH81_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RH81_PRUDU)

HSP 1 Score: 73.6 bits (179), Expect = 1.210e-13
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   10 GSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQFC 207
            G+RF + F+DD +RM  VY LR KSEALC  K+F+  V   +G +++++RSD+GGEYT   F +FC
Sbjct:  416 GNRFFLTFIDDCTRMCWVYFLRHKSEALCVFKKFKATVELQSGYKLKKLRSDRGGEYTSVEFERFC 481          
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: A0A6A4DH85_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DH85_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.240e-13
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    7 GGSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQF 204
            GG  +A+ F+DD+SR   VY L+ K+E +   K F+ D+  A G +I+RIRSD GGEYTG+ F+++
Sbjct:   10 GGRTYAVTFIDDFSRHVTVYFLKMKAEVMEKFKMFKADMENATGRKIKRIRSDNGGEYTGRLFKEY 75          
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: A0A6A3LQ24_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LQ24_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.310e-13
Identity = 30/66 (45.45%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    7 GGSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQF 204
            GG  +A+ F+DD+SR   VY +++K+E L   K F+ D+  A G +I+R+RSD GGEYTG+ F+++
Sbjct:   37 GGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEY 102          
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: A0A6A3G5S7_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3G5S7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.320e-13
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    7 GGSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQ 201
            GG  +A+ F+DD+SR   VY +++KSE L   K F+ D+  A G +IRR+RSD GGEYTG+ F++
Sbjct:  112 GGCTYAVTFIDDFSRHVTVYFMKKKSEVLEKFKMFKADMENATGRKIRRLRSDNGGEYTGRLFKE 176          
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: UPI00159ED418 (DDE-type integrase/transposase/recombinase n=1 Tax=Enterobacter cloacae complex sp. GF14B TaxID=2511982 RepID=UPI00159ED418)

HSP 1 Score: 67.8 bits (164), Expect = 3.530e-13
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1
Query:   16 RFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQFC 207
            R+ IIF+DD+SR   V+ LRQKSEAL   KQF +      G R++++RSD GGEY  + F  +C
Sbjct:   22 RYFIIFIDDFSRYTTVFLLRQKSEALSVFKQFHKAAELQIGRRLKKLRSDNGGEYVSREFVSYC 85          
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Match: A0A6A3G1E7_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3G1E7_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.620e-13
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    7 GGSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIRRIRSDQGGEYTGKPFRQF 204
            GG  +A+ F+DD+SR   VY +++K+E L   K F+ D+  A G +I+R+RSD GGEYTG+ F++ 
Sbjct:   61 GGCTYAVTFIDDFSRHVTVYFMKKKAEVLEKFKMFKADMENATGRKIKRLRSDNGGEYTGRLFKEM 126          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46103.11525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9GEZ3_FAGSY9.800e-1552.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A2I0V7V6_9ASPA4.300e-1446.38Retrovirus-related Pol polyprotein from transposon... [more]
A0A6G0JTE1_9STRA1.090e-1346.97Integrase catalytic domain-containing protein n=3 ... [more]
A0A6A4ASW4_9STRA1.180e-1348.48Integrase catalytic domain-containing protein (Fra... [more]
A0A4Y1RH81_PRUDU1.210e-1350.00Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A6A4DH85_9STRA1.240e-1346.97Integrase catalytic domain-containing protein n=3 ... [more]
A0A6A3LQ24_9STRA1.310e-1345.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3G5S7_9STRA3.320e-1349.23Integrase catalytic domain-containing protein n=3 ... [more]
UPI00159ED4183.530e-1348.44DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A6A3G1E7_9STRA3.620e-1345.45Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46103contigH-paniculata_contig46103:15..221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue6e-10
Seed eggNOG ortholog67593.Physo140614
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930377.793757-CDS-H-paniculata_contig46103:14..2211622930377.793757-CDS-H-paniculata_contig46103:14..221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46103 15..221 -
1691481264.6106212-CDS-H-paniculata_contig46103:14..2211691481264.6106212-CDS-H-paniculata_contig46103:14..221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46103 15..221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46103.11525.1prot_H-paniculata_contig46103.11525.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46103 15..221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46103.11525.1

>prot_H-paniculata_contig46103.11525.1 ID=prot_H-paniculata_contig46103.11525.1|Name=mRNA_H-paniculata_contig46103.11525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
SFGGSRFAIIFVDDYSRMRKVYTLRQKSEALCALKQFERDVARANGLRIR
RIRSDQGGEYTGKPFRQFC
back to top

mRNA from alignment at H-paniculata_contig46103:15..221-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46103.11525.1 ID=mRNA_H-paniculata_contig46103.11525.1|Name=mRNA_H-paniculata_contig46103.11525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig46103:15..221- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCTTCGGAGGATCTCGCTTCGCTATCATCTTCGTCGACGACTACAGCAG AATGCGCAAAGTCTATACCTTGCGACAAAAGTCGGAGGCGCTATGTGCCC TGAAGCAATTCGAGAGAGACGTAGCGAGGGCAAACGGTTTGCGGATTAGG CGTATTCGGTCGGATCAGGGAGGAGAATATACTGGGAAGCCTTTTAGGCA ATTCTGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig46103:15..221-

>mRNA_H-paniculata_contig46103.11525.1 ID=mRNA_H-paniculata_contig46103.11525.1|Name=mRNA_H-paniculata_contig46103.11525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig46103:15..221- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCTTCGGAGGATCTCGCTTCGCTATCATCTTCGTCGACGACTACAGCAG
AATGCGCAAAGTCTATACCTTGCGACAAAAGTCGGAGGCGCTATGTGCCC
TGAAGCAATTCGAGAGAGACGTAGCGAGGGCAAACGGTTTGCGGATTAGG
CGTATTCGGTCGGATCAGGGAGGAGAATATACTGGGAAGCCTTTTAGGCA
ATTCTGCTCCTTCGGAGGATCTCGCTTCGCTATCATCTTCGTCGACGACT
ACAGCAGAATGCGCAAAGTCTATACCTTGCGACAAAAGTCGGAGGCGCTA
TGTGCCCTGAAGCAATTCGAGAGAGACGTAGCGAGGGCAAACGGTTTGCG
GATTAGGCGTATTCGGTCGGATCAGGGAGGAGAATATACTGGGAAGCCTT
TTAGGCAATTCTGC
back to top