mRNA_H-paniculata_contig4610.11522.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4610.11522.1
Unique NamemRNA_H-paniculata_contig4610.11522.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4610.11522.1 vs. uniprot
Match: D7FRP5_ECTSI (Transthyretin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRP5_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 8.870e-29
Identity = 46/66 (69.70%), Postives = 53/66 (80.30%), Query Frame = 1
Query:    1 FPTHIAQDFVKGTYRVVFDTEAYFGRTGAPCFYPEVTVVFRVEDPSEHFHVPLLLSPFGYSTYRGS 198
            FP  + Q+  K TYRV FDTEAYF   G+ CFYPEV VVFRVE+P EH+H+PLL+SPFGYSTYRGS
Sbjct:    7 FPVCVFQNLSKATYRVTFDTEAYFETVGSRCFYPEVAVVFRVEEPEEHYHIPLLISPFGYSTYRGS 72          
BLAST of mRNA_H-paniculata_contig4610.11522.1 vs. uniprot
Match: A0A6H5JTL5_9PHAE (5-hydroxyisourate hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL5_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.330e-25
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1
Query:   31 KGTYRVVFDTEAYFGRTGAPCFYPEVTVVFRVEDPSEHFHVPLLLSPFGYSTYRGS 198
            K TYRV FDTEAYF   G+ CFYPEV +VFRVE+P EH+H+PLL+SPFGYSTYRGS
Sbjct:   98 KATYRVTFDTEAYFETAGSRCFYPEVAIVFRVEEPEEHYHIPLLISPFGYSTYRGS 153          
BLAST of mRNA_H-paniculata_contig4610.11522.1 vs. uniprot
Match: A0A352EVB3_9BACT (5-hydroxyisourate hydrolase n=2 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A352EVB3_9BACT)

HSP 1 Score: 98.2 bits (243), Expect = 4.590e-25
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 1
Query:   13 IAQDFVKGTYRVVFDTEAYFGRTGAPCFYPEVTVVFRVEDPSEHFHVPLLLSPFGYSTYRGS 198
            + +   +GTYR+VFDTEAYF      CFYP+V VVFRVED ++H+H+PLLLSPFGYSTYRGS
Sbjct:   53 VGEPIERGTYRLVFDTEAYFSSLNVECFYPQVAVVFRVEDAAQHYHIPLLLSPFGYSTYRGS 114          
BLAST of mRNA_H-paniculata_contig4610.11522.1 vs. uniprot
Match: A0A518AZ59_9BACT (5-hydroxyisourate hydrolase n=1 Tax=Planctomycetes bacterium Pan216 TaxID=2527975 RepID=A0A518AZ59_9BACT)

HSP 1 Score: 94.0 bits (232), Expect = 4.870e-23
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 1
Query:   25 FVKGTYRVVFDTEAYFGRTGAPCFYPEVTVVFRVEDPSEHFHVPLLLSPFGYSTYRGS 198
            F KG YR+ FDT AY+ + G   FYPEVT++F V D SEHFHVPLLLSPFGYSTYRGS
Sbjct:   87 FPKGVYRLTFDTSAYYRKLGQETFYPEVTIIFAVRDESEHFHVPLLLSPFGYSTYRGS 144          
BLAST of mRNA_H-paniculata_contig4610.11522.1 vs. uniprot
Match: UPI0013DF5561 (hydroxyisourate hydrolase n=1 Tax=Modestobacter sp. KNN46-3 TaxID=2711218 RepID=UPI0013DF5561)

HSP 1 Score: 91.7 bits (226), Expect = 1.620e-22
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 1
Query:   34 GTYRVVFDTEAYFGRTGAPCFYPEVTVVFRVEDPSEHFHVPLLLSPFGYSTYRGS 198
            G+YR+VFDT  YF RTG PCF+PEV+V F V DP++H HVPLLLSPF YSTYRGS
Sbjct:   57 GSYRLVFDTAGYFTRTGQPCFFPEVSVSFVVADPTQHHHVPLLLSPFAYSTYRGS 111          
BLAST of mRNA_H-paniculata_contig4610.11522.1 vs. uniprot
Match: A0A7S0W1Y3_9CRYP (5-hydroxyisourate hydrolase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W1Y3_9CRYP)

HSP 1 Score: 92.0 bits (227), Expect = 2.580e-22
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   31 KGTYRVVFDTEAYFGRTGAPCFYPEVTVVFRVEDPSEHFHVPLLLSPFGYSTYRGS 198
            +GTYR  FDT AYF + G  CFYP V ++F +E+PSEH+H+PLLLSP+GYSTYRGS
Sbjct:   86 RGTYRCTFDTAAYFSKMGGKCFYPFVPIIFVIENPSEHYHIPLLLSPYGYSTYRGS 141          
BLAST of mRNA_H-paniculata_contig4610.11522.1 vs. uniprot
Match: A0A7S1DRU5_HEMAN (5-hydroxyisourate hydrolase n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DRU5_HEMAN)

HSP 1 Score: 92.0 bits (227), Expect = 2.710e-22
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   31 KGTYRVVFDTEAYFGRTGAPCFYPEVTVVFRVEDPSEHFHVPLLLSPFGYSTYRGS 198
            KGTY+  FDT +YF R G  CFYP V ++F +E PSEH+H+PLLLSPFGYSTYRGS
Sbjct:   88 KGTYKCTFDTASYFARMGGKCFYPFVPIIFVIEAPSEHYHIPLLLSPFGYSTYRGS 143          
BLAST of mRNA_H-paniculata_contig4610.11522.1 vs. uniprot
Match: A0A2V8PZ97_9BACT (5-hydroxyisourate hydrolase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8PZ97_9BACT)

HSP 1 Score: 90.1 bits (222), Expect = 7.150e-22
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   13 IAQDFVKGTYRVVFDTEAYFGRTGAPCFYPEVTVVFRVEDPSEHFHVPLLLSPFGYSTYRGS 198
            ++Q    G YR+VFDTE YF       FYP+VTVVF+VED S+H+HVPLL+SP+GYSTYRGS
Sbjct:   53 VSQPVADGVYRLVFDTEPYFSALSLNGFYPQVTVVFKVEDASQHYHVPLLISPYGYSTYRGS 114          
BLAST of mRNA_H-paniculata_contig4610.11522.1 vs. uniprot
Match: A0A1X7NFB4_9MICO (5-hydroxyisourate hydrolase n=1 Tax=Rathayibacter oskolensis TaxID=1891671 RepID=A0A1X7NFB4_9MICO)

HSP 1 Score: 89.7 bits (221), Expect = 1.040e-21
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 1
Query:   34 GTYRVVFDTEAYFGRTGAPCFYPEVTVVFRVEDPSEHFHVPLLLSPFGYSTYRGS 198
            G YRVVFDT AYF R+G   FYPEV V FR+ED + HFH+PLLLSPF YSTYRGS
Sbjct:   61 GVYRVVFDTAAYFERSGTDSFYPEVVVAFRLEDVTAHFHIPLLLSPFAYSTYRGS 115          
BLAST of mRNA_H-paniculata_contig4610.11522.1 vs. uniprot
Match: UPI001BDD0E98 (hydroxyisourate hydrolase n=1 Tax=Sphaerisporangium sp. H8589 TaxID=2835868 RepID=UPI001BDD0E98)

HSP 1 Score: 89.4 bits (220), Expect = 1.190e-21
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   31 KGTYRVVFDTEAYFGRTGAPCFYPEVTVVFRVEDPSEHFHVPLLLSPFGYSTYRGS 198
            KG +R+VFDT AYF R G   FYPEV V F ++DP+EH+HVPLLLSPF YSTYRGS
Sbjct:   52 KGVHRLVFDTGAYFARCGTAGFYPEVVVTFVIDDPAEHYHVPLLLSPFAYSTYRGS 107          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4610.11522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRP5_ECTSI8.870e-2969.70Transthyretin n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5JTL5_9PHAE2.330e-2575.005-hydroxyisourate hydrolase n=1 Tax=Ectocarpus sp.... [more]
A0A352EVB3_9BACT4.590e-2566.135-hydroxyisourate hydrolase n=2 Tax=Blastocatellia... [more]
A0A518AZ59_9BACT4.870e-2370.695-hydroxyisourate hydrolase n=1 Tax=Planctomycetes... [more]
UPI0013DF55611.620e-2272.73hydroxyisourate hydrolase n=1 Tax=Modestobacter sp... [more]
A0A7S0W1Y3_9CRYP2.580e-2266.075-hydroxyisourate hydrolase n=1 Tax=Hemiselmis tep... [more]
A0A7S1DRU5_HEMAN2.710e-2267.865-hydroxyisourate hydrolase n=2 Tax=Hemiselmis and... [more]
A0A2V8PZ97_9BACT7.150e-2262.905-hydroxyisourate hydrolase n=1 Tax=Acidobacteria ... [more]
A0A1X7NFB4_9MICO1.040e-2172.735-hydroxyisourate hydrolase n=1 Tax=Rathayibacter ... [more]
UPI001BDD0E981.190e-2169.64hydroxyisourate hydrolase n=1 Tax=Sphaerisporangiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4610contigH-paniculata_contig4610:3720..3920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Seed eggNOG ortholog2880.D7FRP5
KEGG rclassRC03393
KEGG koko:K07127
KEGG TC9.B.35.1.2,9.B.35.2
KEGG ReactionR06601
KEGG Pathwayko00230,ko01100,ko01120,map00230,map01100,map01120
KEGG ModuleM00546
Hectar predicted targeting categoryother localisation
EggNOG free text desc.thyroid hormone binding
EggNOG OGsCOG2351@1,KOG3006@2759
Ec32 ortholog descriptionTransthyretin/hydroxyisourate hydrolase, superfamily
Ec32 orthologEc-00_003340.1
EC3.5.2.17
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Exons1
Model size201
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue4.3e-21
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930377.6852455-CDS-H-paniculata_contig4610:3719..39201622930377.6852455-CDS-H-paniculata_contig4610:3719..3920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4610 3720..3920 -
1691481264.5697937-CDS-H-paniculata_contig4610:3719..39201691481264.5697937-CDS-H-paniculata_contig4610:3719..3920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4610 3720..3920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4610.11522.1prot_H-paniculata_contig4610.11522.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4610 3720..3920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4610.11522.1

>prot_H-paniculata_contig4610.11522.1 ID=prot_H-paniculata_contig4610.11522.1|Name=mRNA_H-paniculata_contig4610.11522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
FPTHIAQDFVKGTYRVVFDTEAYFGRTGAPCFYPEVTVVFRVEDPSEHFH
VPLLLSPFGYSTYRGS*
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mRNA from alignment at H-paniculata_contig4610:3720..3920-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4610.11522.1 ID=mRNA_H-paniculata_contig4610.11522.1|Name=mRNA_H-paniculata_contig4610.11522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig4610:3720..3920- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCCAACCCATATCGCACAGGACTTTGTCAAGGGCACCTATCGCGTCGT TTTCGACACAGAAGCATACTTTGGTCGGACGGGAGCCCCGTGTTTCTACC CAGAGGTTACGGTAGTATTTCGGGTCGAAGATCCATCAGAACACTTCCAC GTTCCTTTGCTCTTGAGCCCCTTCGGCTACTCAACCTATCGTGGTAGCTA A
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Coding sequence (CDS) from alignment at H-paniculata_contig4610:3720..3920-

>mRNA_H-paniculata_contig4610.11522.1 ID=mRNA_H-paniculata_contig4610.11522.1|Name=mRNA_H-paniculata_contig4610.11522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig4610:3720..3920- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTCCAACCCATATCGCACAGGACTTTGTCAAGGGCACCTATCGCGTCGT
TTTCGACACAGAAGCATACTTTGGTCGGACGGGAGCCCCGTGTTTCTACC
CAGAGGTTACGGTAGTATTTCGGGTCGAAGATCCATCAGAACACTTCCAC
GTTCCTTTGCTCTTGAGCCCCTTCGGCTACTCAACCTATCGTGGTAGCTA
ATTTCCAACCCATATCGCACAGGACTTTGTCAAGGGCACCTATCGCGTCG
TTTTCGACACAGAAGCATACTTTGGTCGGACGGGAGCCCCGTGTTTCTAC
CCAGAGGTTACGGTAGTATTTCGGGTCGAAGATCCATCAGAACACTTCCA
CGTTCCTTTGCTCTTGAGCCCCTTCGGCTACTCAACCTATCGTGGTAGCT
AA
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