prot_H-paniculata_contig46075.11520.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig46075.11520.1
Unique Name	prot_H-paniculata_contig46075.11520.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	112

Homology

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BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 87.4 bits (215), Expect = 6.590e-19
Identity = 48/116 (41.38%), Postives = 71/116 (61.21%), Query Frame = 0

Query:    6 HERLGHVR--------DLPTVARQQGIRLSGKLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPVN-KSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQFERDV 112
            H+R GH+         ++      +GI+   K GVC+ CE+ K +K+       ER  EPLELVHTD+ GPV  +S GG+R+AI F DDY+R R VY ++ KS++L  LK++ +D+
Sbjct:    5 HQRFGHINYEYLRQMGEIDDTGVPKGIK---KPGVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDM 117

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BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.270e-18
Identity = 49/116 (42.24%), Postives = 70/116 (60.34%), Query Frame = 0

Query:    6 HERLGHVR--------DLPTVARQQGIRLSGKLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPVN-KSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQFERDV 112
            H+R GH+         ++      +GI+   K GVC  CE+ K +K+       ER  EPLELVHTD+ GPV  +S GG+R+AI F DDY+R R VY ++ KSE+L  LK++ +D+
Sbjct:   25 HQRFGHMNYEYLRQMGEIDGTGVPKGIK---KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 137

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BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.540e-18
Identity = 49/116 (42.24%), Postives = 70/116 (60.34%), Query Frame = 0

Query:    6 HERLGHVR--------DLPTVARQQGIRLSGKLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPVN-KSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQFERDV 112
            H+R GH+         ++      +GI+   K GVC  CE+ K +K+       ER  EPLELVHTD+ GPV  +S GG+R+AI F DDY+R R VY ++ KSE+L  LK++ +D+
Sbjct:   71 HQRFGHINYEYLKQMGEIDDTGVPKGIK---KPGVCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 183

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BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: W7T9I7_9STRA (Copia-like retrotransposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9I7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.640e-18
Identity = 48/116 (41.38%), Postives = 71/116 (61.21%), Query Frame = 0

Query:    6 HERLGHVR--------DLPTVARQQGIRLSGKLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPVN-KSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQFERDV 112
            H+R GH+         ++      +GI+   K G+C+ CE+ K +K+       ER  EPLELVHTD+ GPV  +S GG+R+AI F DDY+R R VY ++ KSE+L  LK++ +D+
Sbjct:   75 HQRFGHINYEYLRQMGEIDDTGVPKGIK---KPGICATCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 187

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BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 8.610e-18
Identity = 49/116 (42.24%), Postives = 70/116 (60.34%), Query Frame = 0

Query:    6 HERLGHVR--------DLPTVARQQGIRLSGKLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPVN-KSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQFERDV 112
            H+R GH+         ++      +GI+   K GVC  CE+ K +K+       ER  EPLELVHTD+ GPV  +S GG+R+AI F DDY+R R VY ++ KSE+L  LK++ +D+
Sbjct:   25 HQRFGHMNYEYLRQMGEIDGTGVPKGIK---KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 137

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BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: A0A0S7KIZ2_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIZ2_9TELE)

HSP 1 Score: 84.7 bits (208), Expect = 1.020e-17
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 0

Query:    6 HERLGHVRDLPTVARQ-QGIRLSG--KLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPVN-KSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQFER 110
            H+RLGH   L  +     G++ S   +L  C AC  GK ++QP K   E R+   L+L+H+D+ GP+  +S GGS++ + F+DD+SR  KVY ++ KSE L   K+FER
Sbjct:   58 HQRLGHTTKLKKLGDLVNGVKFSADKELPFCEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFER 166

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BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: W7SYS1_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYS1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.420e-17
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 0

Query:   29 KLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPVN-KSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQF 108
            K GVC  CE+ K +K+       ER  EPLELVHTD+ GPV  +S GG+R+AI F DDY+R R VY ++ KSE+L  LK++
Sbjct:   15 KPGVCGTCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRY 95

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BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: K8Z011_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z011_NANGC)

HSP 1 Score: 83.6 bits (205), Expect = 1.950e-17
Identity = 46/116 (39.66%), Postives = 70/116 (60.34%), Query Frame = 0

Query:    6 HERLGHVR--------DLPTVARQQGIRLSGKLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPVN-KSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQFERDV 112
            H+R GH+         ++     ++GI+   K GV   CE+ K +K+       ER  EPLEL+HTD+ GP+  +S GG+R+AI F DDY+R R VY ++ KSE+L  LK++ +D+
Sbjct:    5 HKRFGHINYEYLRQMGEIDDTGVRKGIK---KPGVYGTCERAKQTKRSFGTKSWERANEPLELLHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYLKDI 117

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BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: A0A0S7KIW8_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIW8_9TELE)

HSP 1 Score: 84.7 bits (208), Expect = 7.610e-17
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 0

Query:    6 HERLGHVRDLPTVARQ-QGIRLSG--KLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPVN-KSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQFER 110
            H+RLGH   L  +     G++ S   +L  C AC  GK ++QP K   E R+   L+L+H+D+ GP+  +S GGS++ + F+DD+SR  KVY ++ KSE L   K+FER
Sbjct:  429 HQRLGHTTKLKKLGDLVNGVKFSADKELPFCEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFER 537

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BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: A0A4Y1REW6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REW6_PRUDU)

HSP 1 Score: 84.7 bits (208), Expect = 7.870e-17
Identity = 47/116 (40.52%), Postives = 65/116 (56.03%), Query Frame = 0

Query:    1 DTKFLHERLGHVRDLPTVARQQGIRLSG------KLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPV-NKSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQFE 109
            D    H RLGH+        QQ   + G      K GVC  C  GK+ ++P +  +  R   PLEL+HTD+ GP+ N+S GG+++ I F+DDYSRM  VY LR KS  +   K+F+
Sbjct:  370 DPWIWHRRLGHLNFASMKKMQQTQMVLGLPDFSEKEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFK 485

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
K8YS61_NANGC	6.590e-19	41.38	Retrovirus-related pol polyprotein from transposon...	[more]
W7TGQ6_9STRA	3.270e-18	42.24	Retrotransposon unclassified n=1 Tax=Nannochlorops...	[more]
W7T174_9STRA	3.540e-18	42.24	Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita...	[more]
W7T9I7_9STRA	4.640e-18	41.38	Copia-like retrotransposable element n=1 Tax=Nanno...	[more]
W7TIQ5_9STRA	8.610e-18	42.24	Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita...	[more]
A0A0S7KIZ2_9TELE	1.020e-17	41.28	POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax...	[more]
W7SYS1_9STRA	1.420e-17	51.85	Retrovirus-related pol polyprotein from transposon...	[more]
K8Z011_NANGC	1.950e-17	39.66	Retrovirus-related pol polyprotein from transposon...	[more]
A0A0S7KIW8_9TELE	7.610e-17	41.28	POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax...	[more]
A0A4Y1REW6_PRUDU	7.870e-17	40.52	Transposable element protein n=1 Tax=Prunus dulcis...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 47..110 e-value: 7.2E-9 score: 37.1
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 5..108
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 5..108
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 53..110

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig46075	contig	H-paniculata_contig46075:335..670 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig46075.11520.1	mRNA_H-paniculata_contig46075.11520.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig46075 335..670 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig46075.11520.1 ID=prot_H-paniculata_contig46075.11520.1|Name=mRNA_H-paniculata_contig46075.11520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
DTKFLHERLGHVRDLPTVARQQGIRLSGKLGVCSACEKGKASKQPVKKYQ
EERTTEPLELVHTDIAGPVNKSFGGSRFAIVFVDDYSRMRKVYTLRQKSE
ALWALKQFERDV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf