mRNA_H-paniculata_contig46075.11520.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46075.11520.1
Unique NamemRNA_H-paniculata_contig46075.11520.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 87.4 bits (215), Expect = 6.590e-19
Identity = 48/116 (41.38%), Postives = 71/116 (61.21%), Query Frame = 1
Query:   16 HERLGHVR--------DLPTVARQQGIRLSGKLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPVN-KSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQFERDV 336
            H+R GH+         ++      +GI+   K GVC+ CE+ K +K+       ER  EPLELVHTD+ GPV  +S GG+R+AI F DDY+R R VY ++ KS++L  LK++ +D+
Sbjct:    5 HQRFGHINYEYLRQMGEIDDTGVPKGIK---KPGVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDM 117          
BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.270e-18
Identity = 49/116 (42.24%), Postives = 70/116 (60.34%), Query Frame = 1
Query:   16 HERLGHVR--------DLPTVARQQGIRLSGKLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPVN-KSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQFERDV 336
            H+R GH+         ++      +GI+   K GVC  CE+ K +K+       ER  EPLELVHTD+ GPV  +S GG+R+AI F DDY+R R VY ++ KSE+L  LK++ +D+
Sbjct:   25 HQRFGHMNYEYLRQMGEIDGTGVPKGIK---KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 137          
BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.540e-18
Identity = 49/116 (42.24%), Postives = 70/116 (60.34%), Query Frame = 1
Query:   16 HERLGHVR--------DLPTVARQQGIRLSGKLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPVN-KSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQFERDV 336
            H+R GH+         ++      +GI+   K GVC  CE+ K +K+       ER  EPLELVHTD+ GPV  +S GG+R+AI F DDY+R R VY ++ KSE+L  LK++ +D+
Sbjct:   71 HQRFGHINYEYLKQMGEIDDTGVPKGIK---KPGVCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 183          
BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: W7T9I7_9STRA (Copia-like retrotransposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9I7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.640e-18
Identity = 48/116 (41.38%), Postives = 71/116 (61.21%), Query Frame = 1
Query:   16 HERLGHVR--------DLPTVARQQGIRLSGKLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPVN-KSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQFERDV 336
            H+R GH+         ++      +GI+   K G+C+ CE+ K +K+       ER  EPLELVHTD+ GPV  +S GG+R+AI F DDY+R R VY ++ KSE+L  LK++ +D+
Sbjct:   75 HQRFGHINYEYLRQMGEIDDTGVPKGIK---KPGICATCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 187          
BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 8.610e-18
Identity = 49/116 (42.24%), Postives = 70/116 (60.34%), Query Frame = 1
Query:   16 HERLGHVR--------DLPTVARQQGIRLSGKLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPVN-KSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQFERDV 336
            H+R GH+         ++      +GI+   K GVC  CE+ K +K+       ER  EPLELVHTD+ GPV  +S GG+R+AI F DDY+R R VY ++ KSE+L  LK++ +D+
Sbjct:   25 HQRFGHMNYEYLRQMGEIDGTGVPKGIK---KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 137          
BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: A0A0S7KIZ2_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIZ2_9TELE)

HSP 1 Score: 84.7 bits (208), Expect = 1.020e-17
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   16 HERLGHVRDLPTVARQ-QGIRLSG--KLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPVN-KSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQFER 330
            H+RLGH   L  +     G++ S   +L  C AC  GK ++QP K   E R+   L+L+H+D+ GP+  +S GGS++ + F+DD+SR  KVY ++ KSE L   K+FER
Sbjct:   58 HQRLGHTTKLKKLGDLVNGVKFSADKELPFCEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFER 166          
BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: W7SYS1_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYS1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.420e-17
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   85 KLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPVN-KSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQF 324
            K GVC  CE+ K +K+       ER  EPLELVHTD+ GPV  +S GG+R+AI F DDY+R R VY ++ KSE+L  LK++
Sbjct:   15 KPGVCGTCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRY 95          
BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: K8Z011_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z011_NANGC)

HSP 1 Score: 83.6 bits (205), Expect = 1.950e-17
Identity = 46/116 (39.66%), Postives = 70/116 (60.34%), Query Frame = 1
Query:   16 HERLGHVR--------DLPTVARQQGIRLSGKLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPVN-KSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQFERDV 336
            H+R GH+         ++     ++GI+   K GV   CE+ K +K+       ER  EPLEL+HTD+ GP+  +S GG+R+AI F DDY+R R VY ++ KSE+L  LK++ +D+
Sbjct:    5 HKRFGHINYEYLRQMGEIDDTGVRKGIK---KPGVYGTCERAKQTKRSFGTKSWERANEPLELLHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYLKDI 117          
BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: A0A0S7KIW8_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIW8_9TELE)

HSP 1 Score: 84.7 bits (208), Expect = 7.610e-17
Identity = 45/109 (41.28%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   16 HERLGHVRDLPTVARQ-QGIRLSG--KLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPVN-KSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQFER 330
            H+RLGH   L  +     G++ S   +L  C AC  GK ++QP K   E R+   L+L+H+D+ GP+  +S GGS++ + F+DD+SR  KVY ++ KSE L   K+FER
Sbjct:  429 HQRLGHTTKLKKLGDLVNGVKFSADKELPFCEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFER 537          
BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Match: A0A4Y1REW6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REW6_PRUDU)

HSP 1 Score: 84.7 bits (208), Expect = 7.870e-17
Identity = 47/116 (40.52%), Postives = 65/116 (56.03%), Query Frame = 1
Query:    1 DTKFLHERLGHVRDLPTVARQQGIRLSG------KLGVCSACEKGKASKQPVKKYQEERTTEPLELVHTDIAGPV-NKSFGGSRFAIVFVDDYSRMRKVYTLRQKSEALWALKQFE 327
            D    H RLGH+        QQ   + G      K GVC  C  GK+ ++P +  +  R   PLEL+HTD+ GP+ N+S GG+++ I F+DDYSRM  VY LR KS  +   K+F+
Sbjct:  370 DPWIWHRRLGHLNFASMKKMQQTQMVLGLPDFSEKEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFK 485          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46075.11520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K8YS61_NANGC6.590e-1941.38Retrovirus-related pol polyprotein from transposon... [more]
W7TGQ6_9STRA3.270e-1842.24Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
W7T174_9STRA3.540e-1842.24Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7T9I7_9STRA4.640e-1841.38Copia-like retrotransposable element n=1 Tax=Nanno... [more]
W7TIQ5_9STRA8.610e-1842.24Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
A0A0S7KIZ2_9TELE1.020e-1741.28POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
W7SYS1_9STRA1.420e-1751.85Retrovirus-related pol polyprotein from transposon... [more]
K8Z011_NANGC1.950e-1739.66Retrovirus-related pol polyprotein from transposon... [more]
A0A0S7KIW8_9TELE7.610e-1741.28POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A4Y1REW6_PRUDU7.870e-1740.52Transposable element protein n=1 Tax=Prunus dulcis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46075contigH-paniculata_contig46075:335..670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score81.6
Seed ortholog evalue2.5e-13
Seed eggNOG ortholog7425.NV17383-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930377.364986-CDS-H-paniculata_contig46075:334..6701622930377.364986-CDS-H-paniculata_contig46075:334..670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46075 335..670 -
1691481264.450691-CDS-H-paniculata_contig46075:334..6701691481264.450691-CDS-H-paniculata_contig46075:334..670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46075 335..670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46075.11520.1prot_H-paniculata_contig46075.11520.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46075 335..670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46075.11520.1

>prot_H-paniculata_contig46075.11520.1 ID=prot_H-paniculata_contig46075.11520.1|Name=mRNA_H-paniculata_contig46075.11520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
DTKFLHERLGHVRDLPTVARQQGIRLSGKLGVCSACEKGKASKQPVKKYQ
EERTTEPLELVHTDIAGPVNKSFGGSRFAIVFVDDYSRMRKVYTLRQKSE
ALWALKQFERDV
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mRNA from alignment at H-paniculata_contig46075:335..670-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46075.11520.1 ID=mRNA_H-paniculata_contig46075.11520.1|Name=mRNA_H-paniculata_contig46075.11520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=336bp|location=Sequence derived from alignment at H-paniculata_contig46075:335..670- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACACCAAGTTTCTACACGAGCGACTTGGGCATGTTCGAGACCTTCCCAC AGTCGCGCGGCAACAGGGCATAAGGTTAAGCGGGAAGCTCGGTGTCTGCT CGGCGTGTGAGAAGGGGAAAGCGTCGAAGCAGCCTGTAAAAAAGTATCAA GAAGAGCGGACGACCGAGCCGTTGGAGCTGGTGCACACCGACATAGCCGG ACCGGTGAACAAGTCCTTCGGAGGATCTCGCTTCGCCATCGTCTTCGTCG ATGACTACAGCAGAATGCGCAAAGTCTATACCCTGCGACAAAAGTCGGAG GCGCTATGGGCCCTGAAGCAATTCGAGAGGGACGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig46075:335..670-

>mRNA_H-paniculata_contig46075.11520.1 ID=mRNA_H-paniculata_contig46075.11520.1|Name=mRNA_H-paniculata_contig46075.11520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig46075:335..670- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACACCAAGTTTCTACACGAGCGACTTGGGCATGTTCGAGACCTTCCCAC
AGTCGCGCGGCAACAGGGCATAAGGTTAAGCGGGAAGCTCGGTGTCTGCT
CGGCGTGTGAGAAGGGGAAAGCGTCGAAGCAGCCTGTAAAAAAGTATCAA
GAAGAGCGGACGACCGAGCCGTTGGAGCTGGTGCACACCGACATAGCCGG
ACCGGTGAACAAGTCCTTCGGAGGATCTCGCTTCGCCATCGTCTTCGTCG
ATGACTACAGCAGAATGCGCAAAGTCTATACCCTGCGACAAAAGTCGGAG
GCGCTATGGGCCCTGAAGCAATTCGAGAGGGACGTAGACACCAAGTTTCT
ACACGAGCGACTTGGGCATGTTCGAGACCTTCCCACAGTCGCGCGGCAAC
AGGGCATAAGGTTAAGCGGGAAGCTCGGTGTCTGCTCGGCGTGTGAGAAG
GGGAAAGCGTCGAAGCAGCCTGTAAAAAAGTATCAAGAAGAGCGGACGAC
CGAGCCGTTGGAGCTGGTGCACACCGACATAGCCGGACCGGTGAACAAGT
CCTTCGGAGGATCTCGCTTCGCCATCGTCTTCGTCGATGACTACAGCAGA
ATGCGCAAAGTCTATACCCTGCGACAAAAGTCGGAGGCGCTATGGGCCCT
GAAGCAATTCGAGAGGGACGTA
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