mRNA_H-paniculata_contig46048.11514.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig46048.11514.1
Unique NamemRNA_H-paniculata_contig46048.11514.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 361 bits (926), Expect = 1.770e-114
Identity = 177/396 (44.70%), Postives = 256/396 (64.65%), Query Frame = 1
Query:   13 NDAEPLPRNVEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSDS-EGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVAVMLGGVAVSFSS 1197
            +D E  P  V  V +S YR  WE+A++ E  GH  TGTF+ V  + EG++P+  ++ FS+KTN+ G +  FK RLVA G +QI ++DY    +P PS+A++K +L VA ++ + L H+D  QA+  A L   +FL LPAGCG  S +  +  RA+Y L+Q+GRQ      D LV  G EQC  +PCVFR+MVD+ + +++ ++VDD++VAG + DC  L   +S+K P  NL E   + GC+ +RD    TL + QT ++D +++RF++ S S +PA+   DL P+RDDE+GG+WP R A+G ++W++  +RPD++ AVR VARH+H P  RHW  + KIL Y    R LG+T+ RGS L L VY DA  A+   DRRSVSG+A  +GG  VS  S
Sbjct:  285 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGS 679          
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 369 bits (947), Expect = 1.010e-113
Identity = 181/396 (45.71%), Postives = 258/396 (65.15%), Query Frame = 1
Query:   13 NDAEPLPRNVEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSDS-EGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVAVMLGGVAVSFSS 1197
            +D E  P  V  V +S YR  WE+A++ E  GH  TGTF+ V  + EG++P+  ++ FS+KTN+ G +  FK RLVA G +QI ++DY    +P PS+A++K +L VA ++ + L H+D  QA+  A L   +FL LPAGCG  S K  +  RA+Y L+Q+GRQ      D LV  G EQC  +PCVFR+MVD+ + +++ ++VDD++VAG + DC  L   +++K P  NLGE   + GC+ +RD    TL + QT ++D ++ERF++ S S +PAT  ADL P+R+DEEGG+WP R A+G ++W++  +RPD++ AVR VARH+H P  RHW  + KIL Y    R LG+T+ RGS L L VY DA  A+   DRRSVSG+A  +GG  VS  S
Sbjct:  731 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGS 1125          
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 352 bits (902), Expect = 1.300e-113
Identity = 173/387 (44.70%), Postives = 248/387 (64.08%), Query Frame = 1
Query:   40 VEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSDS-EGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVAVMLGGVAVSFSS 1197
            V  V +S YR  WE+A++ E  GH  TGTF+ V  + EG++P+  ++ F++KTN+ G + KFK RLVA G +QI ++DY    +P PS+A++K +L VA ++ L+L H+D  QAF  A L   +FL LPAGCG  S K V+  RA+Y L+Q+GRQ      D LV  G EQC  +PCVFR+M DD +        D ++VAG + DC  L   +++  P  +LGE   + GC+ +RD    TL + QT ++D ++ RF++ S S +PA+   D+ P+RDDE GG+WP R A+G ++W++  +RPDI+ AVR VARH+H P  RHW  ++KIL+Y  + R LG+T+ RGS L L VY DA  A+   DRRSVSG+A  +GG  +S  S
Sbjct:    3 VAGVTKSVYREGWEQAMREEFDGHLGTGTFSFVDGTPEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGS 388          
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 369 bits (947), Expect = 4.600e-112
Identity = 181/396 (45.71%), Postives = 258/396 (65.15%), Query Frame = 1
Query:   13 NDAEPLPRNVEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSDS-EGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVAVMLGGVAVSFSS 1197
            +D E  P  V  V +S YR  WE+A++ E  GH  TGTF+ V  + EG++P+  ++ FS+KTN+ G +  FK RLVA G +QI ++DY    +P PS+A++K +L VA ++ + L H+D  QA+  A L   +FL LPAGCG  S K  +  RA+Y L+Q+GRQ      D LV  G EQC  +PCVFR+MVD+ + +++ ++VDD++VAG + DC  L   +++K P  NLGE   + GC+ +RD    TL + QT ++D ++ERF++ S S +PAT  ADL P+R+DEEGG+WP R A+G ++W++  +RPD++ AVR VARH+H P  RHW  + KIL Y    R LG+T+ RGS L L VY DA  A+   DRRSVSG+A  +GG  VS  S
Sbjct: 1110 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGS 1504          
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 369 bits (947), Expect = 1.000e-111
Identity = 181/396 (45.71%), Postives = 258/396 (65.15%), Query Frame = 1
Query:   13 NDAEPLPRNVEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSDS-EGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVAVMLGGVAVSFSS 1197
            +D E  P  V  V +S YR  WE+A++ E  GH  TGTF+ V  + EG++P+  ++ FS+KTN+ G +  FK RLVA G +QI ++DY    +P PS+A++K +L VA ++ + L H+D  QA+  A L   +FL LPAGCG  S K  +  RA+Y L+Q+GRQ      D LV  G EQC  +PCVFR+MVD+ + +++ ++VDD++VAG + DC  L   +++K P  NLGE   + GC+ +RD    TL + QT ++D ++ERF++ S S +PAT  ADL P+R+DEEGG+WP R A+G ++W++  +RPD++ AVR VARH+H P  RHW  + KIL Y    R LG+T+ RGS L L VY DA  A+   DRRSVSG+A  +GG  VS  S
Sbjct: 1273 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGS 1667          
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 368 bits (945), Expect = 1.290e-111
Identity = 181/396 (45.71%), Postives = 257/396 (64.90%), Query Frame = 1
Query:   13 NDAEPLPRNVEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSDS-EGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVAVMLGGVAVSFSS 1197
            +D E  P  V  V +S YR  WE+A++ E  GH  TGTF+ V  + EG++P+  ++ FS+KTN+ G +  FK RLVA G +QI ++DY    +P PS+A++K +L VA ++ + L H+D  QA+  A L   +FL LPAGCG  S K  +  RA+Y L+Q+GRQ      D LV  G EQC  +PCVFR+MVD  + +++ ++VDD++VAG + DC  L   +++K P  NLGE   + GC+ +RD    TL + QT ++D ++ERF++ S S +PAT  ADL P+R+DEEGG+WP R A+G ++W++  +RPD++ AVR VARH+H P  RHW  + KIL Y    R LG+T+ RGS L L VY DA  A+   DRRSVSG+A  +GG  VS  S
Sbjct: 1130 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGS 1524          
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 353 bits (905), Expect = 1.210e-107
Identity = 174/396 (43.94%), Postives = 253/396 (63.89%), Query Frame = 1
Query:   13 NDAEPLPRNVEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSDS-EGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVAVMLGGVAVSFSS 1197
            +D E  P  V  V +S YR  WE+A++ E  GH  TGTF+ V  + EG++P+  ++ FS+KTN+ G + KFK R+VA G +Q+ ++DY    +P PS+A++  +L VA ++ + L H+D  QA   A L   +F  LPAGCG  S + V+  RA+Y L+Q+GRQ      D LV  G EQC  +PCVFR+MVD+ + +++ ++VDD++VAG + DC  L   +++K P  NLGE   + GC+ +RD    TL + QT ++D ++ERF++ S S +PAT  ADL P+R+DEEGG+WP R A+G ++W++  +RPD++ A R VARH+H P  RHW  + KIL Y    R LG+T+ RGS L   VY DA  A+   D RS SG+A  +GG  VS  S
Sbjct:  840 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDKFKARVVARGFSQLPNVDYFRSSSPCPSSASIMLMLAVANEKGMNLNHWDVKQASPHATLDEEVFPRLPAGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGPSVYVDASYADTE-DSRSGSGLATTVGGTLVSHGS 1234          
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5JJY0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY0_9PHAE)

HSP 1 Score: 349 bits (895), Expect = 2.200e-107
Identity = 171/396 (43.18%), Postives = 250/396 (63.13%), Query Frame = 1
Query:   13 NDAEPLPRNVEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSDS-EGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVAVMLGGVAVSFSS 1197
            ++ EP P  V    +S YR  WE+A++ E  GH  TGTF+ V  + EG +P+  ++ FS+K N+ G + KFK RLVA G +QI ++DY    +P PS+A++K +L VA ++ + L H+D  QA   A L   +FL LPAGCG  S K V+   A+Y L+Q+ RQ      D LV  G E+C  + CVFR+MVD+ + +++ ++ DD++VAG + DC  L   +++K P  NLGE   + GC+ +RD    TL + QT ++D +++RF++ S S +PAT  ADL P R+DEEGG+WP R A+G ++W++  +RPD++ AVR  ARH+H+P  RHW  +  +L Y    R LG+T+ RGS L L VY DA  A+   DRRSVSG+A  +GG  V   S
Sbjct:  617 SEVEPPPMTVAGFAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGHRPVSSKWCFSWKVNKEGRIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAHTHATLDEEVFLKLPAGCGDRSYKIVKAEPAIYGLKQSERQWGYLAADTLVENGFEECKADRCVFRKMVDEVVVMIIVIYADDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMLKRFDVQSTSRIPATPGADLGPIREDEEGGEWPVREAIGSMMWMSTFSRPDVSFAVRAAARHAHSPAERHWDAIQTVLGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVGHGS 1011          
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 325 bits (832), Expect = 9.760e-105
Identity = 157/385 (40.78%), Postives = 248/385 (64.42%), Query Frame = 1
Query:   13 NDAEPLPRNVEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-SEGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVAV 1164
            +D E +P   +DV  SKY+ FWE A+++E+ GH KTGTFT V +  EG+K +  +++FS+KTNE G ++ FK R+VA G +QI  ID+    +  PSAA++KTV+ VA ++  +L H+D  QA++ A L   ++L  P GCGS SGK V++ RALY L+Q+GR+      D L+ +G EQC V+PC+FR++VD  +  ++ ++VDD++VA +E +   LF  ++ + P+ +LGE   Y GC+   D      T+ QT  ++ +++RF +T+ +  P  + AD+ P+ DDE   D P R A+G L+W  + TRPDIA  +  + + +H+P  R W  +++I+SY N  +  G+T+ RGS L+L V+ DA  A+  +DRRS +G+AV
Sbjct:   10 SDVEAVPMTYKDVMCSKYKVFWETAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIEYGYEQCRVDPCIFRKVVDGEVVGLIVINVDDILVAADEGEREDLFASLNNRFPVKDLGECTWYDGCAIAMDVENGITTLSQTAKIESMLKRFNVTTTAFTPTATDADIGPKGDDEPAVDKPVREAIGYLMWTKL-TRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDLRVFLDASYADNEVDRRSTTGLAV 393          
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 337 bits (864), Expect = 9.750e-104
Identity = 162/384 (42.19%), Postives = 250/384 (65.10%), Query Frame = 1
Query:   13 NDAEPLPRNVEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-SEGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVA 1161
            +D E +P   +DV  SKY+ FWE A+++E+ GH KTGTFT V +  EG+K +  +++FS+KTNE G +V FK R+VA G +QI  ID+    +  PSAA++KTV+ VA ++  +L H+D  QA++ A L   ++L  P GCGS SGK V++ RALY L+Q GR+      D L+  G EQC V+PCVFR++VD  +  ++ ++VDD++VA +E +   LF  +++K P+ +LGE   Y GC+   D       + QT +++ +++RF++T+ +  PA + ADL P+RDDE   D P R A+GCL+W  + TRPDIA  +  + + +H+P  R W  +++I+SY N  +  G+T+ RGS L+L V+ DA  A+  +DRRS +G+A
Sbjct:  494 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTKL-TRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDLSVFVDASYADNEVDRRSTTGLA 876          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JC10_9PHAE1.770e-11444.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE1.010e-11345.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCG0_9PHAE1.300e-11344.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE4.600e-11245.71Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.000e-11145.71Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JN00_9PHAE1.290e-11145.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQW4_9PHAE1.210e-10743.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJY0_9PHAE2.200e-10743.18CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5JUN0_9PHAE9.760e-10540.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE9.750e-10442.19Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig46048contigH-paniculata_contig46048:294..1490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue7.5e-22
Seed eggNOG ortholog164328.Phyra85763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size1197
Cds size657
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930376.779269-UTR-H-paniculata_contig46048:293..8331622930376.779269-UTR-H-paniculata_contig46048:293..833Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46048 294..833 +
1691481264.1876805-UTR-H-paniculata_contig46048:293..8331691481264.1876805-UTR-H-paniculata_contig46048:293..833Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig46048 294..833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930376.7961428-CDS-H-paniculata_contig46048:833..14901622930376.7961428-CDS-H-paniculata_contig46048:833..1490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46048 834..1490 +
1691481264.2003448-CDS-H-paniculata_contig46048:833..14901691481264.2003448-CDS-H-paniculata_contig46048:833..1490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig46048 834..1490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig46048.11514.1prot_H-paniculata_contig46048.11514.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig46048 834..1490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig46048.11514.1

>prot_H-paniculata_contig46048.11514.1 ID=prot_H-paniculata_contig46048.11514.1|Name=mRNA_H-paniculata_contig46048.11514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
MEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKI
PMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPA
TSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSH
NPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDR
RSVSGVAVMLGGVAVSFSS
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mRNA from alignment at H-paniculata_contig46048:294..1490+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig46048.11514.1 ID=mRNA_H-paniculata_contig46048.11514.1|Name=mRNA_H-paniculata_contig46048.11514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1197bp|location=Sequence derived from alignment at H-paniculata_contig46048:294..1490+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTTTTTCGGTGAATGATGCGGAACCGTTACCTCGAAACGTAGAGGATGT GCGACGATCAAAATACCGTCCGTTTTGGGAGGAGGCGATTCAAAGGGAAA TGGGGGGCCACGCTAAGACGGGAACGTTTACCGTAGTAAGTGACAGTGAA GGAAAGAAACCGTTGAGGGGGCAGTTCATTTTTTCGTATAAAACTAACGA GATGGGGAATGTGGTAAAGTTCAAAGTAAGATTGGTAGCTGATGGAAGGA CACAAATCCAAGACATAGACTACGATGAAGTTTTTGCCCCTACCCCTTCC GCCGCTGCTGTAAAGACGGTGTTAACCGTAGCAGTACAGGAGGATTTGCA ACTTTTTCATTTTGACACCACTCAAGCTTTTGTCCAAGCAGGATTGGGTC ATACTTTATTTTTGTGACTACCTGCTGGGTGTGGTTCATTTTCAGGGAAG ACTGTGAGATTGCACAGAGCTTTGTACGATCTAGAACAGGCCGGTAGGCA GTGAAATACATGTTTGGTGGACGAATTGGTGGGTTTTGGGATGGAACAAT GCATGGTTGAACCTTGCGTGTTTCGTGAGATGGTTGACGACAGGATCTCC TTGATGCTGTCAGTACATGTGGATGACATGGTAGTAGCGGGCGAAGAGGT TGATTGCAACAGGCTTTTCGATAAGATTTCGCAAAAAATTCCCATGACAA ATCTAGGGGAATTAGCCTTGTACACCGGTTGTTCGTTCGACCGGGATTGG AGTAAAGATACTTTGACGATGGACCAAACTGTTTTTGTTGACTACCTTAT GGAGCGGTTCGAAATCACCTCTGTATCTGAACTACCTGCGACATCACTTG CTGACCTAGATCCGCGGCGTGATGATGAGGAAGGTGGAGACTGGCCGTTC AGGCCGGCAGTTGGGTGCCTTCTCTGGCTAGCCATGATTACCCGGCCGGA CATAGCGAATGCTGTGCGAGATGTGGCGCGACACTCGCATAACCCTTGCG CGCGTCACTGGGCTGGGGTCCTGAAAATTCTGTCGTATCCTAACAAGAAC AGGTCTTTGGGACTGACCTTCACGCGGGGGTCAAGGCTGGAACTGGACGT ATACGCTGATGCTGGTGTCGCAGAAAAGTCTTTGGATAGACGATCCGTGT CTGGGGTGGCTGTGATGTTAGGAGGCGTTGCAGTCAGCTTTAGCAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig46048:294..1490+

>mRNA_H-paniculata_contig46048.11514.1 ID=mRNA_H-paniculata_contig46048.11514.1|Name=mRNA_H-paniculata_contig46048.11514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig46048:294..1490+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAACAATGCATGGTTGAACCTTGCGTGTTTCGTGAGATGGTTGACGA
CAGGATCTCCTTGATGCTGTCAGTACATGTGGATGACATGGTAGTAGCGG
GCGAAGAGGTTGATTGCAACAGGCTTTTCGATAAGATTTCGCAAAAAATT
CCCATGACAAATCTAGGGGAATTAGCCTTGTACACCGGTTGTTCGTTCGA
CCGGGATTGGAGTAAAGATACTTTGACGATGGACCAAACTGTTTTTGTTG
ACTACCTTATGGAGCGGTTCGAAATCACCTCTGTATCTGAACTACCTGCG
ACATCACTTGCTGACCTAGATCCGCGGCGTGATGATGAGGAAGGTGGAGA
CTGGCCGTTCAGGCCGGCAGTTGGGTGCCTTCTCTGGCTAGCCATGATTA
CCCGGCCGGACATAGCGAATGCTGTGCGAGATGTGGCGCGACACTCGCAT
AACCCTTGCGCGCGTCACTGGGCTGGGGTCCTGAAAATTCTGTCGTATCC
TAACAAGAACAGGTCTTTGGGACTGACCTTCACGCGGGGGTCAAGGCTGG
AACTGGACGTATACGCTGATGCTGGTGTCGCAGAAAAGTCTTTGGATAGA
CGATCCGTGTCTGGGGTGGCTGTGATGTTAGGAGGCGTTGCAGTCAGCTT
TAGCAGCATGGAACAATGCATGGTTGAACCTTGCGTGTTTCGTGAGATGG
TTGACGACAGGATCTCCTTGATGCTGTCAGTACATGTGGATGACATGGTA
GTAGCGGGCGAAGAGGTTGATTGCAACAGGCTTTTCGATAAGATTTCGCA
AAAAATTCCCATGACAAATCTAGGGGAATTAGCCTTGTACACCGGTTGTT
CGTTCGACCGGGATTGGAGTAAAGATACTTTGACGATGGACCAAACTGTT
TTTGTTGACTACCTTATGGAGCGGTTCGAAATCACCTCTGTATCTGAACT
ACCTGCGACATCACTTGCTGACCTAGATCCGCGGCGTGATGATGAGGAAG
GTGGAGACTGGCCGTTCAGGCCGGCAGTTGGGTGCCTTCTCTGGCTAGCC
ATGATTACCCGGCCGGACATAGCGAATGCTGTGCGAGATGTGGCGCGACA
CTCGCATAACCCTTGCGCGCGTCACTGGGCTGGGGTCCTGAAAATTCTGT
CGTATCCTAACAAGAACAGGTCTTTGGGACTGACCTTCACGCGGGGGTCA
AGGCTGGAACTGGACGTATACGCTGATGCTGGTGTCGCAGAAAAGTCTTT
GGATAGACGATCCGTGTCTGGGGTGGCTGTGATGTTAGGAGGCGTTGCAG
TCAGCTTTAGCAGC
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