mRNA_H-paniculata_contig46048.11514.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 361 bits (926), Expect = 1.770e-114 Identity = 177/396 (44.70%), Postives = 256/396 (64.65%), Query Frame = 1
Query: 13 NDAEPLPRNVEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSDS-EGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVAVMLGGVAVSFSS 1197
+D E P V V +S YR WE+A++ E GH TGTF+ V + EG++P+ ++ FS+KTN+ G + FK RLVA G +QI ++DY +P PS+A++K +L VA ++ + L H+D QA+ A L +FL LPAGCG S + + RA+Y L+Q+GRQ D LV G EQC +PCVFR+MVD+ + +++ ++VDD++VAG + DC L +S+K P NL E + GC+ +RD TL + QT ++D +++RF++ S S +PA+ DL P+RDDE+GG+WP R A+G ++W++ +RPD++ AVR VARH+H P RHW + KIL Y R LG+T+ RGS L L VY DA A+ DRRSVSG+A +GG VS S
Sbjct: 285 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGS 679
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 369 bits (947), Expect = 1.010e-113 Identity = 181/396 (45.71%), Postives = 258/396 (65.15%), Query Frame = 1
Query: 13 NDAEPLPRNVEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSDS-EGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVAVMLGGVAVSFSS 1197
+D E P V V +S YR WE+A++ E GH TGTF+ V + EG++P+ ++ FS+KTN+ G + FK RLVA G +QI ++DY +P PS+A++K +L VA ++ + L H+D QA+ A L +FL LPAGCG S K + RA+Y L+Q+GRQ D LV G EQC +PCVFR+MVD+ + +++ ++VDD++VAG + DC L +++K P NLGE + GC+ +RD TL + QT ++D ++ERF++ S S +PAT ADL P+R+DEEGG+WP R A+G ++W++ +RPD++ AVR VARH+H P RHW + KIL Y R LG+T+ RGS L L VY DA A+ DRRSVSG+A +GG VS S
Sbjct: 731 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGS 1125
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 352 bits (902), Expect = 1.300e-113 Identity = 173/387 (44.70%), Postives = 248/387 (64.08%), Query Frame = 1
Query: 40 VEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSDS-EGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVAVMLGGVAVSFSS 1197
V V +S YR WE+A++ E GH TGTF+ V + EG++P+ ++ F++KTN+ G + KFK RLVA G +QI ++DY +P PS+A++K +L VA ++ L+L H+D QAF A L +FL LPAGCG S K V+ RA+Y L+Q+GRQ D LV G EQC +PCVFR+M DD + D ++VAG + DC L +++ P +LGE + GC+ +RD TL + QT ++D ++ RF++ S S +PA+ D+ P+RDDE GG+WP R A+G ++W++ +RPDI+ AVR VARH+H P RHW ++KIL+Y + R LG+T+ RGS L L VY DA A+ DRRSVSG+A +GG +S S
Sbjct: 3 VAGVTKSVYREGWEQAMREEFDGHLGTGTFSFVDGTPEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGS 388
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 369 bits (947), Expect = 4.600e-112 Identity = 181/396 (45.71%), Postives = 258/396 (65.15%), Query Frame = 1
Query: 13 NDAEPLPRNVEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSDS-EGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVAVMLGGVAVSFSS 1197
+D E P V V +S YR WE+A++ E GH TGTF+ V + EG++P+ ++ FS+KTN+ G + FK RLVA G +QI ++DY +P PS+A++K +L VA ++ + L H+D QA+ A L +FL LPAGCG S K + RA+Y L+Q+GRQ D LV G EQC +PCVFR+MVD+ + +++ ++VDD++VAG + DC L +++K P NLGE + GC+ +RD TL + QT ++D ++ERF++ S S +PAT ADL P+R+DEEGG+WP R A+G ++W++ +RPD++ AVR VARH+H P RHW + KIL Y R LG+T+ RGS L L VY DA A+ DRRSVSG+A +GG VS S
Sbjct: 1110 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGS 1504
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 369 bits (947), Expect = 1.000e-111 Identity = 181/396 (45.71%), Postives = 258/396 (65.15%), Query Frame = 1
Query: 13 NDAEPLPRNVEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSDS-EGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVAVMLGGVAVSFSS 1197
+D E P V V +S YR WE+A++ E GH TGTF+ V + EG++P+ ++ FS+KTN+ G + FK RLVA G +QI ++DY +P PS+A++K +L VA ++ + L H+D QA+ A L +FL LPAGCG S K + RA+Y L+Q+GRQ D LV G EQC +PCVFR+MVD+ + +++ ++VDD++VAG + DC L +++K P NLGE + GC+ +RD TL + QT ++D ++ERF++ S S +PAT ADL P+R+DEEGG+WP R A+G ++W++ +RPD++ AVR VARH+H P RHW + KIL Y R LG+T+ RGS L L VY DA A+ DRRSVSG+A +GG VS S
Sbjct: 1273 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGS 1667
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 368 bits (945), Expect = 1.290e-111 Identity = 181/396 (45.71%), Postives = 257/396 (64.90%), Query Frame = 1
Query: 13 NDAEPLPRNVEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSDS-EGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVAVMLGGVAVSFSS 1197
+D E P V V +S YR WE+A++ E GH TGTF+ V + EG++P+ ++ FS+KTN+ G + FK RLVA G +QI ++DY +P PS+A++K +L VA ++ + L H+D QA+ A L +FL LPAGCG S K + RA+Y L+Q+GRQ D LV G EQC +PCVFR+MVD + +++ ++VDD++VAG + DC L +++K P NLGE + GC+ +RD TL + QT ++D ++ERF++ S S +PAT ADL P+R+DEEGG+WP R A+G ++W++ +RPD++ AVR VARH+H P RHW + KIL Y R LG+T+ RGS L L VY DA A+ DRRSVSG+A +GG VS S
Sbjct: 1130 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVSHGS 1524
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE) HSP 1 Score: 353 bits (905), Expect = 1.210e-107 Identity = 174/396 (43.94%), Postives = 253/396 (63.89%), Query Frame = 1
Query: 13 NDAEPLPRNVEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSDS-EGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVAVMLGGVAVSFSS 1197
+D E P V V +S YR WE+A++ E GH TGTF+ V + EG++P+ ++ FS+KTN+ G + KFK R+VA G +Q+ ++DY +P PS+A++ +L VA ++ + L H+D QA A L +F LPAGCG S + V+ RA+Y L+Q+GRQ D LV G EQC +PCVFR+MVD+ + +++ ++VDD++VAG + DC L +++K P NLGE + GC+ +RD TL + QT ++D ++ERF++ S S +PAT ADL P+R+DEEGG+WP R A+G ++W++ +RPD++ A R VARH+H P RHW + KIL Y R LG+T+ RGS L VY DA A+ D RS SG+A +GG VS S
Sbjct: 840 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDKFKARVVARGFSQLPNVDYFRSSSPCPSSASIMLMLAVANEKGMNLNHWDVKQASPHATLDEEVFPRLPAGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGPSVYVDASYADTE-DSRSGSGLATTVGGTLVSHGS 1234
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5JJY0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY0_9PHAE) HSP 1 Score: 349 bits (895), Expect = 2.200e-107 Identity = 171/396 (43.18%), Postives = 250/396 (63.13%), Query Frame = 1
Query: 13 NDAEPLPRNVEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSDS-EGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVAVMLGGVAVSFSS 1197
++ EP P V +S YR WE+A++ E GH TGTF+ V + EG +P+ ++ FS+K N+ G + KFK RLVA G +QI ++DY +P PS+A++K +L VA ++ + L H+D QA A L +FL LPAGCG S K V+ A+Y L+Q+ RQ D LV G E+C + CVFR+MVD+ + +++ ++ DD++VAG + DC L +++K P NLGE + GC+ +RD TL + QT ++D +++RF++ S S +PAT ADL P R+DEEGG+WP R A+G ++W++ +RPD++ AVR ARH+H+P RHW + +L Y R LG+T+ RGS L L VY DA A+ DRRSVSG+A +GG V S
Sbjct: 617 SEVEPPPMTVAGFAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGHRPVSSKWCFSWKVNKEGRIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAHTHATLDEEVFLKLPAGCGDRSYKIVKAEPAIYGLKQSERQWGYLAADTLVENGFEECKADRCVFRKMVDEVVVMIIVIYADDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMLKRFDVQSTSRIPATPGADLGPIREDEEGGEWPVREAIGSMMWMSTFSRPDVSFAVRAAARHAHSPAERHWDAIQTVLGYLKGTRDLGITYQRGSGLGLAVYVDASYADTE-DRRSVSGLATTVGGTVVGHGS 1011
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE) HSP 1 Score: 325 bits (832), Expect = 9.760e-105 Identity = 157/385 (40.78%), Postives = 248/385 (64.42%), Query Frame = 1
Query: 13 NDAEPLPRNVEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-SEGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVAV 1164
+D E +P +DV SKY+ FWE A+++E+ GH KTGTFT V + EG+K + +++FS+KTNE G ++ FK R+VA G +QI ID+ + PSAA++KTV+ VA ++ +L H+D QA++ A L ++L P GCGS SGK V++ RALY L+Q+GR+ D L+ +G EQC V+PC+FR++VD + ++ ++VDD++VA +E + LF ++ + P+ +LGE Y GC+ D T+ QT ++ +++RF +T+ + P + AD+ P+ DDE D P R A+G L+W + TRPDIA + + + +H+P R W +++I+SY N + G+T+ RGS L+L V+ DA A+ +DRRS +G+AV
Sbjct: 10 SDVEAVPMTYKDVMCSKYKVFWETAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIEYGYEQCRVDPCIFRKVVDGEVVGLIVINVDDILVAADEGEREDLFASLNNRFPVKDLGECTWYDGCAIAMDVENGITTLSQTAKIESMLKRFNVTTTAFTPTATDADIGPKGDDEPAVDKPVREAIGYLMWTKL-TRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDLRVFLDASYADNEVDRRSTTGLAV 393
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE) HSP 1 Score: 337 bits (864), Expect = 9.750e-104 Identity = 162/384 (42.19%), Postives = 250/384 (65.10%), Query Frame = 1
Query: 13 NDAEPLPRNVEDVRRSKYRPFWEEAIQREMGGHAKTGTFTVVSD-SEGKKPLRGQFIFSYKTNEMGNVVKFKVRLVADGRTQIQDIDYDEVFAPTPSAAAVKTVLTVAVQEDLQLFHFDTTQAFVQAGLGHTLFL*LPAGCGSFSGKTVRLHRALYDLEQAGRQ*NTCLVDELVGFGMEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIPMTNLGELALYTGCSFDRDWSKDTLTMDQTVFVDYLMERFEITSVSELPATSLADLDPRRDDEEGGDWPFRPAVGCLLWLAMITRPDIANAVRDVARHSHNPCARHWAGVLKILSYPNKNRSLGLTFTRGSRLELDVYADAGVAEKSLDRRSVSGVA 1161
+D E +P +DV SKY+ FWE A+++E+ GH KTGTFT V + EG+K + +++FS+KTNE G +V FK R+VA G +QI ID+ + PSAA++KTV+ VA ++ +L H+D QA++ A L ++L P GCGS SGK V++ RALY L+Q GR+ D L+ G EQC V+PCVFR++VD + ++ ++VDD++VA +E + LF +++K P+ +LGE Y GC+ D + QT +++ +++RF++T+ + PA + ADL P+RDDE D P R A+GCL+W + TRPDIA + + + +H+P R W +++I+SY N + G+T+ RGS L+L V+ DA A+ +DRRS +G+A
Sbjct: 494 SDVEAVPMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTKL-TRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDLSVFVDASYADNEVDRRSTTGLA 876 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig46048.11514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig46048.11514.1 >prot_H-paniculata_contig46048.11514.1 ID=prot_H-paniculata_contig46048.11514.1|Name=mRNA_H-paniculata_contig46048.11514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp MEQCMVEPCVFREMVDDRISLMLSVHVDDMVVAGEEVDCNRLFDKISQKIback to top mRNA from alignment at H-paniculata_contig46048:294..1490+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig46048.11514.1 ID=mRNA_H-paniculata_contig46048.11514.1|Name=mRNA_H-paniculata_contig46048.11514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1197bp|location=Sequence derived from alignment at H-paniculata_contig46048:294..1490+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig46048:294..1490+ >mRNA_H-paniculata_contig46048.11514.1 ID=mRNA_H-paniculata_contig46048.11514.1|Name=mRNA_H-paniculata_contig46048.11514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig46048:294..1490+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |