mRNA_H-paniculata_contig4602.11512.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4602.11512.1
Unique NamemRNA_H-paniculata_contig4602.11512.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4602.11512.1 vs. uniprot
Match: A0A6H5K5A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A9_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 6.720e-7
Identity = 32/77 (41.56%), Postives = 39/77 (50.65%), Query Frame = 2 
Query:  170 LKQEPYIMLVHARNQQNAD--------GSGKKGVVP------FCSDCLGNCKGTCSPSGELRY*GGMIDQRPRVCSV 358
            L +EPY+MLV AR++ + +        GS KK V        FCSDC+G CKGTCSP G           R R CS 
Sbjct:  111 LGREPYLMLVRARSRSSLEQELSSRGGGSNKKSVASTNISARFCSDCVGGCKGTCSPDGAR-------SGRSRSCST 180
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BLAST of mRNA_H-paniculata_contig4602.11512.1 vs. uniprot
Match: D7FH18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH18_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 3.720e-6
Identity = 32/77 (41.56%), Postives = 39/77 (50.65%), Query Frame = 2 
Query:  170 LKQEPYIMLVHARNQQNAD--------GSGKKGVVP------FCSDCLGNCKGTCSPSGELRY*GGMIDQRPRVCSV 358
            L +EPY+MLV AR++ + +        GS KK V        FCSDC+G CKGTCSP G           R R CS 
Sbjct:  821 LGREPYLMLVRARSRYSLEQELSSRGGGSNKKFVASTSICARFCSDCVGGCKGTCSPDGAR-------SSRSRSCST 890
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4602.11512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5A9_9PHAE6.720e-741.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH18_ECTSI3.720e-641.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4602contigH-paniculata_contig4602:11472..11869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size398
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4602.11512.1prot_H-paniculata_contig4602.11512.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4602 11575..11790 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930376.529207-UTR-H-paniculata_contig4602:11471..115741622930376.529207-UTR-H-paniculata_contig4602:11471..11574Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4602 11472..11574 +
1691481264.0472398-UTR-H-paniculata_contig4602:11471..115741691481264.0472398-UTR-H-paniculata_contig4602:11471..11574Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4602 11472..11574 +
1622930376.5592313-UTR-H-paniculata_contig4602:11790..118691622930376.5592313-UTR-H-paniculata_contig4602:11790..11869Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4602 11791..11869 +
1691481264.0721173-UTR-H-paniculata_contig4602:11790..118691691481264.0721173-UTR-H-paniculata_contig4602:11790..11869Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4602 11791..11869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930376.540602-CDS-H-paniculata_contig4602:11574..117901622930376.540602-CDS-H-paniculata_contig4602:11574..11790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4602 11575..11790 +
1691481264.0598688-CDS-H-paniculata_contig4602:11574..117901691481264.0598688-CDS-H-paniculata_contig4602:11574..11790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4602 11575..11790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4602.11512.1

>prot_H-paniculata_contig4602.11512.1 ID=prot_H-paniculata_contig4602.11512.1|Name=mRNA_H-paniculata_contig4602.11512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MGVTTKVSQSEERSEGGMKEQMLKQEPYIMLVHARNQQNADGSGKKGVVP
FCSDCLGNCKGTCSPSGELRY*
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mRNA from alignment at H-paniculata_contig4602:11472..11869+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4602.11512.1 ID=mRNA_H-paniculata_contig4602.11512.1|Name=mRNA_H-paniculata_contig4602.11512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=398bp|location=Sequence derived from alignment at H-paniculata_contig4602:11472..11869+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAGATCGTGTGCAAGTAGAGAGATCTCGACGACGTGCGGCAAGAGGGC
TGCCCTTACACCGTCCATCGCGAATAGCGGCCGTTACCTCTAGGGCAGAT
CTCATGGGAGTCACCACAAAGGTTTCCCAATCTGAAGAGCGAAGCGAAGG
AGGAATGAAAGAACAAATGCTAAAGCAGGAGCCGTACATCATGCTTGTGC
ACGCACGGAATCAGCAAAACGCAGACGGAAGTGGGAAAAAGGGTGTTGTG
CCATTCTGTTCTGACTGCCTTGGCAACTGCAAGGGGACGTGCTCCCCCAG
TGGGGAACTGCGATATTGAGGGGGAATGATCGATCAACGCCCCCGTGTAT
GCTCGGTAAAATAGAGATTTACACACCGAATACTAAAGACGCGAAAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig4602:11472..11869+

>mRNA_H-paniculata_contig4602.11512.1 ID=mRNA_H-paniculata_contig4602.11512.1|Name=mRNA_H-paniculata_contig4602.11512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig4602:11472..11869+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGTCACCACAAAGGTTTCCCAATCTGAAGAGCGAAGCGAAGGAGG
AATGAAAGAACAAATGCTAAAGCAGGAGCCGTACATCATGCTTGTGCACG
CACGGAATCAGCAAAACGCAGACGGAAGTGGGAAAAAGGGTGTTGTGCCA
TTCTGTTCTGACTGCCTTGGCAACTGCAAGGGGACGTGCTCCCCCAGTGG
GGAACTGCGATATTGAATGGGAGTCACCACAAAGGTTTCCCAATCTGAAG
AGCGAAGCGAAGGAGGAATGAAAGAACAAATGCTAAAGCAGGAGCCGTAC
ATCATGCTTGTGCACGCACGGAATCAGCAAAACGCAGACGGAAGTGGGAA
AAAGGGTGTTGTGCCATTCTGTTCTGACTGCCTTGGCAACTGCAAGGGGA
CGTGCTCCCCCAGTGGGGAACTGCGATATTGA
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