mRNA_H-paniculata_contig4602.11511.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4602.11511.1
Unique NamemRNA_H-paniculata_contig4602.11511.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4602.11511.1 vs. uniprot
Match: D7FH18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH18_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 2.030e-15
Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    4 RRIEARELAAESVALERRARAEGGAKDAAFARAMSRRALARAQWIRKMGDVANHREDSV 180
            RR+EAR LAAE  ++ERR+RAEGGA  AAFARAMSRRALARA+WI+KMGDV + R+D+V
Sbjct:  663 RRVEARALAAERASMERRSRAEGGAGGAAFARAMSRRALARAEWIQKMGDVLDVRKDNV 721
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4602.11511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH18_ECTSI2.030e-1572.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4602contigH-paniculata_contig4602:11074..11429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_003160.1
Exons2
Model size186
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930376.474327-CDS-H-paniculata_contig4602:11073..112171622930376.474327-CDS-H-paniculata_contig4602:11073..11217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4602 11074..11217 +
1691481264.0171282-CDS-H-paniculata_contig4602:11073..112171691481264.0171282-CDS-H-paniculata_contig4602:11073..11217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4602 11074..11217 +
1622930376.4868314-CDS-H-paniculata_contig4602:11388..114271622930376.4868314-CDS-H-paniculata_contig4602:11388..11427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4602 11389..11427 +
1691481264.036245-CDS-H-paniculata_contig4602:11388..114271691481264.036245-CDS-H-paniculata_contig4602:11388..11427Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4602 11389..11427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4602.11511.1prot_H-paniculata_contig4602.11511.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4602 11074..11427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4602.11511.1

>prot_H-paniculata_contig4602.11511.1 ID=prot_H-paniculata_contig4602.11511.1|Name=mRNA_H-paniculata_contig4602.11511.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
QRRIEARELAAESVALERRARAEGGAKDAAFARAMSRRALARAQWIRKMG
DVANHREDSVR
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mRNA from alignment at H-paniculata_contig4602:11074..11429+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4602.11511.1 ID=mRNA_H-paniculata_contig4602.11511.1|Name=mRNA_H-paniculata_contig4602.11511.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=356bp|location=Sequence derived from alignment at H-paniculata_contig4602:11074..11429+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAGACGAATCGAAGCTCGGGAGTTGGCGGCGGAAAGCGTGGCATTGGA
GCGCCGGGCGAGAGCAGAGGGTGGTGCGAAGGATGCCGCGTTCGCCAGAG
CTATGTCCCGGAGAGCTCTGGCTAGGGCACAGTGGATACGAAAGGTATGA
GCATGTTCGTAAAAAGGGTACGTACAAAATGTGCGGAATAACTGTTCCTA
CGAGGTACGTCCTTCGCCCACAGGCATACACCAATGTTTTCCAGCACGAG
TTCAAACGTTGACCACATGTCCGCATTTCCCTCTCCCCACATGGATGTTC
ATTCATCGCTTTCAGATGGGCGATGTTGCTAATCACCGAGAAGACAGCGT
ACGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4602:11074..11429+

>mRNA_H-paniculata_contig4602.11511.1 ID=mRNA_H-paniculata_contig4602.11511.1|Name=mRNA_H-paniculata_contig4602.11511.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig4602:11074..11429+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAGACGAATCGAAGCTCGGGAGTTGGCGGCGGAAAGCGTGGCATTGGA
GCGCCGGGCGAGAGCAGAGGGTGGTGCGAAGGATGCCGCGTTCGCCAGAG
CTATGTCCCGGAGAGCTCTGGCTAGGGCACAGTGGATACGAAAGCAAAGA
CGAATCGAAGCTCGGGAGTTGGCGGCGGAAAGCGTGGCATTGGAGCGCCG
GGCGAGAGCAGAGGGTGGTGCGAAGGATGCCGCGTTCGCCAGAGCTATGT
CCCGGAGAGCTCTGGCTAGGGCACAGTGGATACGAAAGATGGGCGATGTT
GCTAATCACCGAGAAGACAGCGTACGGATGGGCGATGTTGCTAATCACCG
AGAAGACAGCGTACGG
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