mRNA_H-paniculata_contig4598.11500.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4598.11500.1
Unique NamemRNA_H-paniculata_contig4598.11500.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4598.11500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4598contigH-paniculata_contig4598:9802..14495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size680
Cds size666
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4598.11500.1prot_H-paniculata_contig4598.11500.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4598 9816..14495 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930374.22082-UTR-H-paniculata_contig4598:9801..98151622930374.22082-UTR-H-paniculata_contig4598:9801..9815Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4598 9802..9815 +
1691481263.2020252-UTR-H-paniculata_contig4598:9801..98151691481263.2020252-UTR-H-paniculata_contig4598:9801..9815Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4598 9802..9815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930374.2326052-CDS-H-paniculata_contig4598:9815..98301622930374.2326052-CDS-H-paniculata_contig4598:9815..9830Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4598 9816..9830 +
1691481263.2130296-CDS-H-paniculata_contig4598:9815..98301691481263.2130296-CDS-H-paniculata_contig4598:9815..9830Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4598 9816..9830 +
1622930374.260508-CDS-H-paniculata_contig4598:10616..107571622930374.260508-CDS-H-paniculata_contig4598:10616..10757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4598 10617..10757 +
1691481263.221099-CDS-H-paniculata_contig4598:10616..107571691481263.221099-CDS-H-paniculata_contig4598:10616..10757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4598 10617..10757 +
1622930374.2850149-CDS-H-paniculata_contig4598:13822..139571622930374.2850149-CDS-H-paniculata_contig4598:13822..13957Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4598 13823..13957 +
1691481263.228719-CDS-H-paniculata_contig4598:13822..139571691481263.228719-CDS-H-paniculata_contig4598:13822..13957Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4598 13823..13957 +
1622930374.2998953-CDS-H-paniculata_contig4598:14120..144951622930374.2998953-CDS-H-paniculata_contig4598:14120..14495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4598 14121..14495 +
1691481263.2362783-CDS-H-paniculata_contig4598:14120..144951691481263.2362783-CDS-H-paniculata_contig4598:14120..14495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4598 14121..14495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4598.11500.1

>prot_H-paniculata_contig4598.11500.1 ID=prot_H-paniculata_contig4598.11500.1|Name=mRNA_H-paniculata_contig4598.11500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=222bp
MALKKVRHLLFLAQHAMMCSSGAVCKFRASCEEMKDRLKHSYKCKIMDFS
CEEFDHCRSFRGSLVHYSKCSDPNCELTCQRIRESARRSRQLQMGMQAQE
KQEEQVDRRVSGADDQLCLDEASRTPSRVPSKTARFSLGVSSGEFDSRDE
FVGIAAAPARARRVDIKQVPSRPRLPTNSKPGKNTSAAADTGARPVFVFR
SPGQGGGSGTVANEGGAAIATA
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mRNA from alignment at H-paniculata_contig4598:9802..14495+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4598.11500.1 ID=mRNA_H-paniculata_contig4598.11500.1|Name=mRNA_H-paniculata_contig4598.11500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4694bp|location=Sequence derived from alignment at H-paniculata_contig4598:9802..14495+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGATAGTCAACAGATGGCGCTGAAGAAGGTGAGTTTACTGTATTGCAAA
TACCTAGGTGGGCAAACATTGTAACATGAACACACACAGCTTGAGAGGTT
GTTGCTATCGACGATCGTTGTGGTCTCCAAGAAACTTGTTGAGTTGTGCG
CATGCTCAGACCTTCGTTGTGAATGTCGTTCTTTATTCACACGTGGAACC
AAACCACCCTCACGTCCCAAAGATCAGTGTTGTTTGTCATACGCAAATGA
GGACAAACACGAAGTTTTCACCGAAAATCAAATTCGTGTTTTGCTGTACG
AAATTGAATCAAGTTTGCCAAGGTTCCCTAAAATTGAAGGGCAAGGCTCA
GGGTTAGGTAGGTGTCGAAACTGAATCCTAACCCTGCCGCGCGGTAACTT
TGCCAGTTCTACCATTTCTTGCGGAAGCTGCCCATGTTTGTGCGGGGGCG
TTGGCGGATGGCCGAGTCCCTCGTGCCACTTTCGTCTATCTGTGTGCATA
TGAGCTTGAGAATGGTCTGTGTGCATCAACTGCAAGCGGGGGGGCGATGT
TGTGGGCACTGTAAAAGACTTGACTCCGGTAAATTTAAATGCCAATCGTA
AATTGTTGTCATTTCATTCGCTGCCCTTTTTGAAGCCGTGTGAAAACGAA
CATCCCGCCCCGCAATAAACCTTCAAAAGCAATAAAATACGTCATGGACG
TCTGCCCCGTTGTCCGAAAGCGACCGAGTGGCTTCACCTAAACCCCGGCA
CACAACGTCGTGTTGTGTGGGTATCCTGCGCTTTTTGCCTTTTGGACATG
GCGGCTTTGTTGCAGGTTCGCCATCTTCTGTTTCTCGCGCAGCATGCGAT
GATGTGCTCGAGCGGTGCTGTATGCAAGTTCCGTGCGTCGTGCGAGGAGA
TGAAGGATCGACTAAAGCATTCGTACAAATGCAAGATCATGGACTTCAGC
TGCGAGGCGAGATAAAACCGATAATGTGTATATTTGGTAGAGTATCTTGG
CAAGAAGGTAGTAACGTGCTGTGCACTCTAGTGCCGTAAGGGTTTAGCAC
ATGTGTTGGCATAAGCCCGAAAATACCTGAAGTGCAGCTTTGTATAACGT
TTGGGATAAAGATGAGAAAGGTATGTGTAGAGGCAAGCGTTCCCCCTCAA
GGACAGGACCCTCTCTTTAGGAGAGACGTTTCTTCAAACAACTGTAACTT
TGTTTGGAGTGGTTCGACTTTGTTGTTTCACTTTCTCCTCTTGCCGATTA
CAGTCTTGCGCGCTATTTGAGCCCACCCTCGTTAGGCATGGAAAACGACA
CCATATGTGAGCTTGAAGCCTGTGCAAGTTCCGAGAAATTTCGACCTGCT
TACCAAGAATGTCAACCACTGTTAGAGGGAGCGACACGGAATGGTCGATG
GCCCAAAACCGATCCCAACGACCAAAATGAAAATCCCACATTTGTGCTTT
TACCTCGCAGGCCAAAAATTACGAGTTATGTGATTTCGTTACTAAACCCT
ATATCGACCAAATCATAGCTCTGAGGTCGAACTGGGTTACATGTCGACAG
CTGTGATCTAGTGCATATGCAGTGGCGATTTTTGATTCGTCCTATGTTGG
CGACGCGCGTCACGAAAATAGTGTATTTTGAAGATATGTTTGTCTGTAGC
TCGCTCATTTTTTCATTTAGCCAAAATCGCCACTGCACATGCACTAGTAC
TGGTCACAGCGAACACAGCACAACAAACCGTGCACGATTCCTCGCAGTTT
TCGGCGAGAACTGTCTCATCAAAGATCGCATGGCTTGCCGTGGGGCCAAG
CTTTTCGATACTAATATCAAGTATAAAACAATGTGGAACATAACTCAGCA
TGACTTGGTGGCTACGCGTTTCTGTGCTAGTTTCAATTAAGAAAAGGGAG
TGACACTACACAATTGTTCACCCCTCGGATAAATACGAATACAAGACATG
AATATGTACGAGAAATCTGGAATGAATACTGCATCTGTTCGAATTGGGAA
AGATCTCCGGATGTGACACGAAGTGGACTTGATGTACCACGGGACATCGA
AAATCTCGGGCAGATAGAGGGTTCAATCCGTACAGTATCATCCGGAAAAT
AAACAGGATCTGCATGTGTGACTTTTCGCCGGGTATACGAGCACCTGGCG
ACCATCTGTAGAATGACCATTCGTGCATTTGTAAATTAATAAATACGTGT
TTACCCAAGCCAAATAAAGACAGTTCAAGATAGTTGCGAATGCTCCATTC
GTGTTTGTCCGGGGGGTGCAATTGTTTCAGGCGGGGGGGTATTGTCGCTG
GCGGAATAGAAGCCACCTCATGGCCGGTGTACAGCAGTAAAATAGTCCGT
ACAGGCAGTAGACCAGATCGCTCGGCAAGACCTGCCCCACTCCCTTCTGT
GCGTTTTAGTAGCTGTAAGGCTCAGCAATAAGCGAATGTGGACACCCGTC
GAAAAACCAGGGCTCCAGGCCAATTGAAAAATAGTAAACAGCTAGCGCGC
AAATTAGTCAAAGCGAGAACTGGTAGAAACCCTTCAAAGAATAAAGCTGC
GCAACATTGAAACGCGCCGTGGAGAGAGATGGCTTGGCGTTGTCTGCGGC
GCTGCGGCACTGCTTGCCACCGGCACGGTTTTACTAGCTGGTGAGGCGAG
ATTGCCAACAGGTCCGGGGGAGGACCCAGACGGCATGAGGCGGCAGCTCA
GATAGTGCTCGGCGCGTAGCCATGCCTCTTGTGTGTTGTGTGGACCGGGG
TAGCAGATCAGTAGCTGCAGTGTTGTGCAGATGAACTTGCCTCACTTCAG
TTCGATCGGTCGTTACGGGATCTTGCGTGTGTCTTTCTGATTGGCCCATT
TGAAAAAGTCGGTTAGATCTGAATAAAAGAATAATGTCGAGGACACGTTT
TCAACTATGGACCACCCCTATCGCTCCCCCTAACTGTAAGCCACTGCAAC
TTTGAGGACATATGGACAGAAGAACTCGAAAATTGTAACGTTCTTTTGCA
GAGTCGGAATCTCCGTCGAAAAGTAAACATGGTCTAATGTGTTCCATTTT
GTTTGTCAAAGTGGACTGGGGAGGGAGAGGGGTGGGTGAAGGCGCGGGGC
GCAATTTGAACGCGTCAAAATCCTGATTGGAATCAACTCCGCAGGATGGT
TCTTTATATCCTTGAGATTATCGGGACAACACTGGTTCAGGCCGAGCACG
CTGTGGTCAAAGAATTAAAAACATAACAGATGGCAACAACAACGAGGAGG
ATATGGTGATTGCGCCCCCCGATGACGATAACACTCTGTTTTTGCGCGCT
TTTTACATTGTTCACGTGCCTTGCAACACTGGCTCTATATTACATTTTCG
TTTTGTTTTGAGCAGGCAGGGGGCTACGACTTAGTGTAGACTGCCATGAG
ATCTGTGCAGAGCACTCCAGTTTTCGTATTTCCAAGAAAGGAGAACAGTG
TGTGTAAGGTGTCTCAAGTGTCCGTTCAATGGCTCGTTTACCATTATGTA
CCCACGTGCATATGTAGTTTGATATGCATCCCTGGATAATGGATGGCACA
AATCCATAGCAGCTGTAATGCCTATAGGTTGGCTGTACTACGACGTGGAG
CATGTATTTCACCCTGATGATGTTGAACACCGGGCTTTGCCAAGGCAGTT
TGGTCAGACGTGAGCTTTGCCAACGCACTAGAATCGATGGGTTTAGGGTT
GGGGTTAGGGTTAGATATACCACAATATTGGTGGGTGGCAGCAGTATTGA
TGGATTAGGGTCTGGAGGATAGGTATGACGCCCAGATGACCAGCAGGTGA
CAACATTAATTAGAACCCCTGTATACCAGATTTAACATTTATCTTGGGCA
TTAAACGTGATGCGCAACGACGATGGAGGTGTCAATGTGGGCGCATACGT
GAGCTTTTCGTGAAACACGTTTGAGCCAGAACTCTAATTTCTGCTGCCAA
TTGACACCCCTTTCCTCCGCTGTACCTCTCGTGTCTTGTGTTATGTTTTT
TGCGTTCCTTTCCACACACAGGAATTCGACCATTGTCGGTCGTTTCGCGG
TAGCCTTGTGCACTACAGCAAATGCTCGGACCCCAACTGTGAGCTAACGT
GCCAGAGGATAAGGGAAAGTGCCCGCCGCTCTCGACAGCTTCAGATGGGC
ATGCAGGCAAGCTGTCATTTCCGCCCCAGAGGCTTATTGCGAGAAGCTGT
ATTGGTACAGAGTTCAGTAGTTGTCGTCGAGTCGGCCTACTTTATCTCAT
TTCGGTATGAAGAGCATGCTTATGATATTGCTGACACTGTTCTATCTTGT
TGGTTTACTGTTCGCTTAGGCTCAAGAGAAGCAAGAGGAGCAAGTAGATC
GGCGGGTATCCGGTGCCGACGATCAGCTCTGCCTCGACGAAGCCTCGCGT
ACTCCGAGCCGTGTTCCCAGCAAGACCGCGCGATTCTCCCTGGGAGTGTC
AAGTGGGGAGTTCGACAGTAGGGACGAGTTCGTGGGTATCGCTGCCGCCC
CCGCCCGCGCCCGACGCGTGGACATAAAACAAGTCCCCAGCCGCCCACGC
CTCCCTACCAACAGCAAGCCTGGCAAGAACACTTCCGCCGCAGCCGACAC
TGGTGCTCGCCCCGTTTTCGTGTTCAGGTCGCCAGGGCAGGGCGGTGGTA
GTGGGACTGTCGCTAATGAAGGCGGCGCTGCGATAGCAACAGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig4598:9802..14495+

>mRNA_H-paniculata_contig4598.11500.1 ID=mRNA_H-paniculata_contig4598.11500.1|Name=mRNA_H-paniculata_contig4598.11500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1332bp|location=Sequence derived from alignment at H-paniculata_contig4598:9802..14495+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCTGAAGAAGATGGCGCTGAAGAAGGTTCGCCATCTTCTGTTTCT
CGCGCAGCATGCGATGATGTGCTCGAGCGGTGCTGTATGCAAGTTCCGTG
CGTCGTGCGAGGAGATGAAGGATCGACTAAAGCATTCGTACAAATGCAAG
ATCATGGACTTCAGCTGCGAGGTTCGCCATCTTCTGTTTCTCGCGCAGCA
TGCGATGATGTGCTCGAGCGGTGCTGTATGCAAGTTCCGTGCGTCGTGCG
AGGAGATGAAGGATCGACTAAAGCATTCGTACAAATGCAAGATCATGGAC
TTCAGCTGCGAGGAATTCGACCATTGTCGGTCGTTTCGCGGTAGCCTTGT
GCACTACAGCAAATGCTCGGACCCCAACTGTGAGCTAACGTGCCAGAGGA
TAAGGGAAAGTGCCCGCCGCTCTCGACAGCTTCAGATGGGCATGCAGGAA
TTCGACCATTGTCGGTCGTTTCGCGGTAGCCTTGTGCACTACAGCAAATG
CTCGGACCCCAACTGTGAGCTAACGTGCCAGAGGATAAGGGAAAGTGCCC
GCCGCTCTCGACAGCTTCAGATGGGCATGCAGGCTCAAGAGAAGCAAGAG
GAGCAAGTAGATCGGCGGGTATCCGGTGCCGACGATCAGCTCTGCCTCGA
CGAAGCCTCGCGTACTCCGAGCCGTGTTCCCAGCAAGACCGCGCGATTCT
CCCTGGGAGTGTCAAGTGGGGAGTTCGACAGTAGGGACGAGTTCGTGGGT
ATCGCTGCCGCCCCCGCCCGCGCCCGACGCGTGGACATAAAACAAGTCCC
CAGCCGCCCACGCCTCCCTACCAACAGCAAGCCTGGCAAGAACACTTCCG
CCGCAGCCGACACTGGTGCTCGCCCCGTTTTCGTGTTCAGGTCGCCAGGG
CAGGGCGGTGGTAGTGGGACTGTCGCTAATGAAGGCGGCGCTGCGATAGC
AACAGCCGCTCAAGAGAAGCAAGAGGAGCAAGTAGATCGGCGGGTATCCG
GTGCCGACGATCAGCTCTGCCTCGACGAAGCCTCGCGTACTCCGAGCCGT
GTTCCCAGCAAGACCGCGCGATTCTCCCTGGGAGTGTCAAGTGGGGAGTT
CGACAGTAGGGACGAGTTCGTGGGTATCGCTGCCGCCCCCGCCCGCGCCC
GACGCGTGGACATAAAACAAGTCCCCAGCCGCCCACGCCTCCCTACCAAC
AGCAAGCCTGGCAAGAACACTTCCGCCGCAGCCGACACTGGTGCTCGCCC
CGTTTTCGTGTTCAGGTCGCCAGGGCAGGGCGGTGGTAGTGGGACTGTCG
CTAATGAAGGCGGCGCTGCGATAGCAACAGCC
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