mRNA_H-paniculata_contig45946.11497.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45946.11497.1
Unique NamemRNA_H-paniculata_contig45946.11497.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45946.11497.1 vs. uniprot
Match: D8LQV8_ECTSI (Glucose-6-phosphate isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQV8_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 6.220e-48
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:    1 RYSVCSAVGMLPIALHYGFAIAKRFLDGAHDMDNHFLNEPPRQNIPVLMGLLGVWNSTFLGHGSRALLPYSQALLRFAAHIQQVRIGS 264
            RYSVCSAV +LPIALHYGF IA+RFLDGAHDMDNHFLNEPPRQNIPVLMGLLGVWNSTFLGHG+RALLPYSQALLRFAAHIQQV + S
Sbjct:  274 RYSVCSAVSVLPIALHYGFDIARRFLDGAHDMDNHFLNEPPRQNIPVLMGLLGVWNSTFLGHGARALLPYSQALLRFAAHIQQVDMES 361
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BLAST of mRNA_H-paniculata_contig45946.11497.1 vs. uniprot
Match: A0A7S1XRA3_9STRA (Glucose-6-phosphate isomerase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRA3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 7.290e-39
Identity = 61/88 (69.32%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    1 RYSVCSAVGMLPIALHYGFAIAKRFLDGAHDMDNHFLNEPPRQNIPVLMGLLGVWNSTFLGHGSRALLPYSQALLRFAAHIQQVRIGS 264
            R+SVCSAVG++P+AL+YG+   +RFL GAHDMD HFL   P++N+PVL+GL+GVWN TFLGH SRA+LPYSQAL RFAAHIQQV + S
Sbjct:  125 RFSVCSAVGVMPLALYYGYPAMERFLAGAHDMDRHFLEAAPKENLPVLLGLIGVWNGTFLGHASRAILPYSQALTRFAAHIQQVDMES 212
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BLAST of mRNA_H-paniculata_contig45946.11497.1 vs. uniprot
Match: A0A7S2V3M3_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3M3_9STRA)

HSP 1 Score: 139 bits (350), Expect = 9.980e-37
Identity = 65/88 (73.86%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    1 RYSVCSAVGMLPIALHYGFAIAKRFLDGAHDMDNHFLNEPPRQNIPVLMGLLGVWNSTFLGHGSRALLPYSQALLRFAAHIQQVRIGS 264
            R+SVCSAVGM+P++LHYGF + ++FL G  DMD HFLN P RQNIPVLMGLLGVWNS+FLG+ SRALLPY QALLRF AHIQQV + S
Sbjct:  314 RFSVCSAVGMVPLSLHYGFEVMEQFLAGCRDMDQHFLNAPIRQNIPVLMGLLGVWNSSFLGYSSRALLPYCQALLRFPAHIQQVDMES 401
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BLAST of mRNA_H-paniculata_contig45946.11497.1 vs. uniprot
Match: H3G8D0_PHYRM (Glucose-6-phosphate isomerase n=45 Tax=Peronosporaceae TaxID=4777 RepID=H3G8D0_PHYRM)

HSP 1 Score: 137 bits (345), Expect = 3.720e-36
Identity = 66/88 (75.00%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    1 RYSVCSAVGMLPIALHYGFAIAKRFLDGAHDMDNHFLNEPPRQNIPVLMGLLGVWNSTFLGHGSRALLPYSQALLRFAAHIQQVRIGS 264
            RYSV SAVG+LP+AL YGF I ++FL GAH MD H L  P R N+PV+MGLLGVWNS+FLGHGSRALLPYSQALLRFAAHIQQV + S
Sbjct:  275 RYSVTSAVGILPLALQYGFDITEKFLAGAHAMDKHLLEAPLRSNLPVIMGLLGVWNSSFLGHGSRALLPYSQALLRFAAHIQQVDMES 362
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BLAST of mRNA_H-paniculata_contig45946.11497.1 vs. uniprot
Match: A0A836C9A9_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9A9_9STRA)

HSP 1 Score: 137 bits (345), Expect = 4.410e-36
Identity = 66/88 (75.00%), Postives = 72/88 (81.82%), Query Frame = 1 
Query:    1 RYSVCSAVGMLPIALHYGFAIAKRFLDGAHDMDNHFLNEPPRQNIPVLMGLLGVWNSTFLGHGSRALLPYSQALLRFAAHIQQVRIGS 264
            RYSVCSAVG LP+AL YG+   K FL GAHDMD HFL  P RQN+PVL+G+LGVWNSTFLG   RALLPYSQALLRFAAHIQQV + S
Sbjct:  276 RYSVCSAVGALPLALQYGYDAVKAFLAGAHDMDRHFLEAPLRQNLPVLLGVLGVWNSTFLGSACRALLPYSQALLRFAAHIQQVDMES 363
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BLAST of mRNA_H-paniculata_contig45946.11497.1 vs. uniprot
Match: A0A067CVQ8_SAPPC (Glucose-6-phosphate isomerase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CVQ8_SAPPC)

HSP 1 Score: 137 bits (344), Expect = 5.060e-36
Identity = 62/88 (70.45%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    1 RYSVCSAVGMLPIALHYGFAIAKRFLDGAHDMDNHFLNEPPRQNIPVLMGLLGVWNSTFLGHGSRALLPYSQALLRFAAHIQQVRIGS 264
            RYSVCSAVG++P+ALHYG  I   FL GAHD+D H LN P R+N+PVL+GLLG+WNS+FLGH +RA+LPY+QALLRFAAHIQQV + S
Sbjct:  275 RYSVCSAVGIVPLALHYGADITDAFLAGAHDLDEHLLNAPLRENLPVLLGLLGIWNSSFLGHATRAMLPYAQALLRFAAHIQQVDMES 362
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BLAST of mRNA_H-paniculata_contig45946.11497.1 vs. uniprot
Match: A0A7S2EQ78_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EQ78_TRICV)

HSP 1 Score: 127 bits (319), Expect = 6.220e-36
Identity = 58/87 (66.67%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:    4 YSVCSAVGMLPIALHYGFAIAKRFLDGAHDMDNHFLNEPPRQNIPVLMGLLGVWNSTFLGHGSRALLPYSQALLRFAAHIQQVRIGS 264
            +SVCSAVG++P+ L Y  A+ +RFLDGAHD+D HF + P R+NIPV++GLLGVWNSTFLG+ +RALLPYSQAL R  AHIQQV + S
Sbjct:    1 FSVCSAVGLVPLGLMYSHAVMERFLDGAHDIDEHFFDAPLRENIPVILGLLGVWNSTFLGYSARALLPYSQALRRLPAHIQQVDMES 87
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BLAST of mRNA_H-paniculata_contig45946.11497.1 vs. uniprot
Match: A0A1V9ZYZ2_9STRA (Glucose-6-phosphate isomerase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYZ2_9STRA)

HSP 1 Score: 136 bits (343), Expect = 6.960e-36
Identity = 64/88 (72.73%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    1 RYSVCSAVGMLPIALHYGFAIAKRFLDGAHDMDNHFLNEPPRQNIPVLMGLLGVWNSTFLGHGSRALLPYSQALLRFAAHIQQVRIGS 264
            RYSVCSAVG++P+ALHYG  I   FL GAHD+D H LN P R+N+PVL+GLLGVWNS+FLGH SRALLPY+Q LLRFAAHIQQV + S
Sbjct:  275 RYSVCSAVGIVPLALHYGSDITDSFLAGAHDVDQHLLNAPLRENLPVLLGLLGVWNSSFLGHTSRALLPYAQGLLRFAAHIQQVDMES 362
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BLAST of mRNA_H-paniculata_contig45946.11497.1 vs. uniprot
Match: A0A484E1E8_BRELC (Glucose-6-phosphate isomerase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E1E8_BRELC)

HSP 1 Score: 136 bits (343), Expect = 7.080e-36
Identity = 64/88 (72.73%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    1 RYSVCSAVGMLPIALHYGFAIAKRFLDGAHDMDNHFLNEPPRQNIPVLMGLLGVWNSTFLGHGSRALLPYSQALLRFAAHIQQVRIGS 264
            R+SV SAVG+LP+AL YGF I + FL+GAH MDNH L  P R+N+PV+MGLLGVWNS+FLGH SRALLPYSQAL+RFAAHIQQV + S
Sbjct:  275 RFSVTSAVGILPLALQYGFDIVEHFLEGAHAMDNHLLQTPLRENLPVIMGLLGVWNSSFLGHSSRALLPYSQALMRFAAHIQQVDMES 362
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BLAST of mRNA_H-paniculata_contig45946.11497.1 vs. uniprot
Match: A0A2D4C8P6_PYTIN (Glucose-6-phosphate isomerase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8P6_PYTIN)

HSP 1 Score: 136 bits (342), Expect = 8.630e-36
Identity = 65/88 (73.86%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    1 RYSVCSAVGMLPIALHYGFAIAKRFLDGAHDMDNHFLNEPPRQNIPVLMGLLGVWNSTFLGHGSRALLPYSQALLRFAAHIQQVRIGS 264
            RYSV SAVG+LP+AL YGF I ++FL GAHDMD H L  P RQN+PV+MGLLGVWNS+FLGH SRALLPY+QALLRF+AHIQQV + S
Sbjct:  278 RYSVTSAVGILPLALQYGFEICEQFLAGAHDMDVHLLEAPFRQNLPVIMGLLGVWNSSFLGHSSRALLPYAQALLRFSAHIQQVDMES 365
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45946.11497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQV8_ECTSI6.220e-4890.91Glucose-6-phosphate isomerase n=2 Tax=Ectocarpus T... [more]
A0A7S1XRA3_9STRA7.290e-3969.32Glucose-6-phosphate isomerase (Fragment) n=1 Tax=P... [more]
A0A7S2V3M3_9STRA9.980e-3773.86Glucose-6-phosphate isomerase n=1 Tax=Fibrocapsa j... [more]
H3G8D0_PHYRM3.720e-3675.00Glucose-6-phosphate isomerase n=45 Tax=Peronospora... [more]
A0A836C9A9_9STRA4.410e-3675.00Glucose-6-phosphate isomerase n=1 Tax=Tribonema mi... [more]
A0A067CVQ8_SAPPC5.060e-3670.45Glucose-6-phosphate isomerase n=3 Tax=Saprolegniac... [more]
A0A7S2EQ78_TRICV6.220e-3666.67Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A1V9ZYZ2_9STRA6.960e-3672.73Glucose-6-phosphate isomerase n=1 Tax=Thraustothec... [more]
A0A484E1E8_BRELC7.080e-3672.73Glucose-6-phosphate isomerase n=1 Tax=Bremia lactu... [more]
A0A2D4C8P6_PYTIN8.630e-3673.86Glucose-6-phosphate isomerase n=1 Tax=Pythium insi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45946contigH-paniculata_contig45946:494..766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.9
Seed ortholog evalue6.4e-35
Seed eggNOG ortholog2880.D8LQV8
Preferred namePGI
KEGG rclassRC00376,RC00563
KEGG koko:K01810
KEGG ReactionR02739,R02740,R03321
KEGG Pathwayko00010,ko00030,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00030,map00500,map00520,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00001,M00004,M00114
Hectar predicted targeting categoryother localisation
GOsGO:0002376,GO:0003674,GO:0003824,GO:0004347,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006091,GO:0006094,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009605,GO:0009607,GO:0009620,GO:0009814,GO:0009817,GO:0009987,GO:0010035,GO:0010038,GO:0016051,GO:0016052,GO:0016053,GO:0016310,GO:0016853,GO:0016860,GO:0016861,GO:0017144,GO:0018130,GO:0019318,GO:0019319,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042221,GO:0042866,GO:0043207,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045087,GO:0046031,GO:0046034,GO:0046364,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046686,GO:0046700,GO:0046939,GO:0050832,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0055086,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:0098542,GO:1901135,GO:1901137,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576
EggNOG free text desc.glucose-6-phosphate isomerase activity
EggNOG OGsCOG0166@1,KOG2446@2759
EC5.3.1.9
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons1
Model size273
Cds size246
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930373.9111996-UTR-H-paniculata_contig45946:493..5201622930373.9111996-UTR-H-paniculata_contig45946:493..520Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45946 494..520 +
1691481263.1384606-UTR-H-paniculata_contig45946:493..5201691481263.1384606-UTR-H-paniculata_contig45946:493..520Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45946 494..520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930373.9267347-CDS-H-paniculata_contig45946:520..7661622930373.9267347-CDS-H-paniculata_contig45946:520..766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45946 521..766 +
1691481263.1486325-CDS-H-paniculata_contig45946:520..7661691481263.1486325-CDS-H-paniculata_contig45946:520..766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45946 521..766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45946.11497.1prot_H-paniculata_contig45946.11497.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45946 521..766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45946.11497.1

>prot_H-paniculata_contig45946.11497.1 ID=prot_H-paniculata_contig45946.11497.1|Name=mRNA_H-paniculata_contig45946.11497.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
MLPIALHYGFAIAKRFLDGAHDMDNHFLNEPPRQNIPVLMGLLGVWNSTF
LGHGSRALLPYSQALLRFAAHIQQVRIGSAS*
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mRNA from alignment at H-paniculata_contig45946:494..766+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45946.11497.1 ID=mRNA_H-paniculata_contig45946.11497.1|Name=mRNA_H-paniculata_contig45946.11497.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=273bp|location=Sequence derived from alignment at H-paniculata_contig45946:494..766+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTACAGTGTTTGTTCTGCCGTGGGAATGCTTCCCATCGCTCTCCACTA
TGGCTTTGCCATTGCGAAACGTTTCTTGGACGGAGCACATGACATGGACA
ACCACTTCCTCAACGAGCCCCCGCGCCAAAACATTCCCGTCCTCATGGGT
CTTCTGGGAGTGTGGAACTCGACCTTCTTGGGGCACGGTTCGAGGGCGCT
GCTGCCTTACTCACAGGCGCTTCTGAGGTTCGCGGCGCATATCCAACAGG
TGAGGATAGGGTCGGCGAGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig45946:494..766+

>mRNA_H-paniculata_contig45946.11497.1 ID=mRNA_H-paniculata_contig45946.11497.1|Name=mRNA_H-paniculata_contig45946.11497.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig45946:494..766+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTCCCATCGCTCTCCACTATGGCTTTGCCATTGCGAAACGTTTCTT
GGACGGAGCACATGACATGGACAACCACTTCCTCAACGAGCCCCCGCGCC
AAAACATTCCCGTCCTCATGGGTCTTCTGGGAGTGTGGAACTCGACCTTC
TTGGGGCACGGTTCGAGGGCGCTGCTGCCTTACTCACAGGCGCTTCTGAG
GTTCGCGGCGCATATCCAACAGGTGAGGATAGGGTCGGCGAGTTGAATGC
TTCCCATCGCTCTCCACTATGGCTTTGCCATTGCGAAACGTTTCTTGGAC
GGAGCACATGACATGGACAACCACTTCCTCAACGAGCCCCCGCGCCAAAA
CATTCCCGTCCTCATGGGTCTTCTGGGAGTGTGGAACTCGACCTTCTTGG
GGCACGGTTCGAGGGCGCTGCTGCCTTACTCACAGGCGCTTCTGAGGTTC
GCGGCGCATATCCAACAGGTGAGGATAGGGTCGGCGAGTTGA
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