mRNA_H-paniculata_contig4588.11487.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4588.11487.1
Unique NamemRNA_H-paniculata_contig4588.11487.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4588.11487.1 vs. uniprot
Match: D7FW74_ECTSI (Peroxiredoxin-like 2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW74_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 1.570e-90
Identity = 138/177 (77.97%), Postives = 151/177 (85.31%), Query Frame = 3
Query:  285 GNTATTANTSPVTTSLIEDVGLQRMTVLDTTQPTAETGESFSAGDLWKDQPAVVFVVRRPGCPLCREHALDLSEKQPELEAKGVKLVGVVHEKLGVEEFSGFFKNGEIYFDEKKAFFNALGMRWEGLSSMLKPSVMSNVKRVKARGVDGNLKGEGRLLGGLLVVGAGDSGVAFEHRE 815
            GNT+  A + PVTT  I+D+GLQRMTV     P A  G S  AGDLWKDQPA+VFVVRRPGC LCREHA DLS KQP+  AKGVKLVGVVHEKLGVEEFSGFFKNGEIYFDE+KAFFNALGMRWEGLSS++KPSV+SN KR  A+GV GNLKGEGRLLGGLLVVG+GDSG+AFEHRE
Sbjct:   12 GNTSAKAASEPVTTEKIKDIGLQRMTVAGRDTPVATAGGSIPAGDLWKDQPAIVFVVRRPGCALCREHAQDLSNKQPDFAAKGVKLVGVVHEKLGVEEFSGFFKNGEIYFDEEKAFFNALGMRWEGLSSLMKPSVISNAKRASAKGVKGNLKGEGRLLGGLLVVGSGDSGIAFEHRE 188          
BLAST of mRNA_H-paniculata_contig4588.11487.1 vs. uniprot
Match: A0A836C9S3_9STRA (Peroxiredoxin-like 2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9S3_9STRA)

HSP 1 Score: 183 bits (464), Expect = 2.510e-52
Identity = 97/180 (53.89%), Postives = 125/180 (69.44%), Query Frame = 3
Query:  285 GNTATTANTSPVTTSLIEDVGLQRMTVLDTTQPTAETGESFSAGDLWKDQPAVVFVVRRPGCPLCREHALDLSEKQPELEAKGVKLVGVVHEKLGVEEFSG-FFKNGEIYFDEKKAFFNALGMRWEGLSSMLKPSVMSNVKRVKARGVDGNLKGEGRLLGGLLVVGAGDSGVAFEHREKA 821
            GN+++ A  +PVT  +I+ + L+ +         +  G +  A  LW +QPA+VFVVRRPGC LCRE A DL E+  E +A GV L GVVHE+LG + F+  FF +G +YFDEKKAFF +LG RW GL  ++ PSV+ N +R K +GV+GN +GEGRLLGGLLVVG GD GV FEHREKA
Sbjct:    2 GNSSS-AEPAPVTLDMIKGIQLKPI-------GHSVDGGTVIASSLWAEQPAIVFVVRRPGCVLCREEAKDLCERAAEFKALGVSLTGVVHEELGADVFAKEFFGDGLLYFDEKKAFFESLGSRWLGLKGLMYPSVIKNAQRAKGKGVEGNWEGEGRLLGGLLVVGKGDEGVLFEHREKA 173          
BLAST of mRNA_H-paniculata_contig4588.11487.1 vs. uniprot
Match: A0A6U1MDW2_9STRA (Peroxiredoxin-like 2A n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MDW2_9STRA)

HSP 1 Score: 152 bits (384), Expect = 3.350e-40
Identity = 76/150 (50.67%), Postives = 106/150 (70.67%), Query Frame = 3
Query:  390 ETGESFSAGDLWKDQPAVVFVVRRPGCPLCREHALDLSEKQPELEAKGVKLVGVVHEKL---GVEEFS-GFFKNGEIYFDEKKAFFNALGMRWEGLSSMLKPSVMSNVKRVKAR---GVDGNLKGEGRLLGGLLVVGAGDSGVAFEHREK 818
            +T     A +LWKD PAVVFVVRRPGCPLCRE A  L E++ + +  GVKL  VVHE+      ++F  GF++NGE+YFDE+K F+ +LG R  GL  ++ PSV+ N++R+K +     +GN++GEGRLLGGL V+G G+ G+A+ HRE+
Sbjct:   55 DTRPKVPARELWKDSPAVVFVVRRPGCPLCREQAAGLMEQKQDFDRLGVKLTAVVHEEGPNDAAKQFKDGFWQNGELYFDEEKGFWQSLGKRRLGLQGLIYPSVIRNMRRMKKKDSESFNGNMEGEGRLLGGLYVMGQGEEGIAYTHRER 204          
BLAST of mRNA_H-paniculata_contig4588.11487.1 vs. uniprot
Match: A0A6P8J5V8_ACTTE (Peroxiredoxin-like 2A n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8J5V8_ACTTE)

HSP 1 Score: 146 bits (369), Expect = 2.660e-38
Identity = 74/136 (54.41%), Postives = 95/136 (69.85%), Query Frame = 3
Query:  411 AGDLWKDQPAVVFVVRRPGCPLCREHALDLSEKQPELEAKGVKLVGVVHEKLGVEEFSGFFKNGEIYFDEKKAFFNALGMRWEGLSSMLKPSVMSNVKRVKARGVDGNLKGEGRLLGGLLVVGAGDSGVAFEHREK 818
            A DLW+   AV+ V+RRPG  LCRE A  LS  +PEL+  G+ LVG+VHEKLGV+EF  FFK GEIY D K+ F+     R+  +S  L+ SV  +  R K +GV+GNLKGEGR+LGG+ V+GAGD G+  +HREK
Sbjct:   51 AADLWRKNGAVIMVIRRPGXSLCREEAQGLSSLKPELDRLGIPLVGIVHEKLGVKEFQPFFK-GEIYLDSKRKFYGPQE-RYMFVSGFLRVSVWRSFFRAKGKGVEGNLKGEGRILGGVFVMGAGDQGILLQHREK 184          
BLAST of mRNA_H-paniculata_contig4588.11487.1 vs. uniprot
Match: UPI0009E5AF1E (redox-regulatory protein FAM213A-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5AF1E)

HSP 1 Score: 144 bits (364), Expect = 1.390e-37
Identity = 72/142 (50.70%), Postives = 96/142 (67.61%), Query Frame = 3
Query:  393 TGESFSAGDLWKDQPAVVFVVRRPGCPLCREHALDLSEKQPELEAKGVKLVGVVHEKLGVEEFSGFFKNGEIYFDEKKAFFNALGMRWEGLSSMLKPSVMSNVKRVKARGVDGNLKGEGRLLGGLLVVGAGDSGVAFEHREK 818
            TG+   A +LW    AV+ VVRRPG  +CRE AL+L+  +PEL+  GV LVGVVHE+ GV+EF  +  N  IYFDEKK F+     RW  LS  L+ SV  ++ R K++GV+GN  GEGR+LGG+ VVG G+ G+  +H+EK
Sbjct:   46 TGKEVMASELWSKAGAVIMVVRRPGXQMCREEALELASLKPELDQMGVNLVGVVHEQKGVKEFQPYL-NASIYFDEKKKFYGP-EQRWMFLSGFLRYSVWKSIFRSKSKGVEGNFVGEGRILGGVFVVGPGEQGILLDHKEK 185          
BLAST of mRNA_H-paniculata_contig4588.11487.1 vs. uniprot
Match: T1G1A3_HELRO (Peroxiredoxin-like 2A n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1G1A3_HELRO)

HSP 1 Score: 144 bits (362), Expect = 1.490e-37
Identity = 73/158 (46.20%), Postives = 103/158 (65.19%), Query Frame = 3
Query:  387 AETGESFSAGDLWKDQPAVVFVVRRPGCPLCREHALDLSEKQPELEAKGVKLVGVVHEKLGVEEFSGFFKNGEIYFDEKKAFFNALGMRWEGLSSMLKPSVMSNVKRVKARGVDGNLKGEGRLLGGLLVVGAGDSGVAFEHREKARAS*LIRERVVDV 860
            ++ G SF A +LWKD  AV+ VVRRPGC LCRE A +L++ + +   K   L  VVHE +GVEEF  FF +GE++ D ++ F+     RW  L+ +L+PSV  ++ R K + V GN +GEGRLLGGL V+G GD G+  EHRE    + + RE +++V
Sbjct:   28 SDDGGSFKASELWKDGGAVIMVVRRPGCILCREEAAELTKLKQKFNDKNFSLFAVVHELMGVEEFRNFF-DGEVFLDPERKFYGPKE-RWMSLAGLLRPSVWLSLIRAKRKHVSGNTEGEGRLLGGLFVIGPGDKGILLEHRESEFGNHVDRELLLNV 183          
BLAST of mRNA_H-paniculata_contig4588.11487.1 vs. uniprot
Match: A0A2T7PYM4_POMCA (Peroxiredoxin-like 2A n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PYM4_POMCA)

HSP 1 Score: 143 bits (361), Expect = 4.170e-37
Identity = 77/168 (45.83%), Postives = 105/168 (62.50%), Query Frame = 3
Query:  315 PVTTSLIEDVGLQRMTVLDTTQPTAETGESFSAGDLWKDQPAVVFVVRRPGCPLCREHALDLSEKQPELEAKGVKLVGVVHEKLGVEEFSGFFKNGEIYFDEKKAFFNALGMRWEGLSSMLKPSVMSNVKRVKARGVDGNLKGEGRLLGGLLVVGAGDSGVAFEHREK 818
            P T + + D+ LQ + ++            F A +LW+   AV+ VVRRPGC LCRE AL+LS+ + EL  + V L  VVHE LGVE+FS FFK   I+ D +K F+  +  R   LS +L+ +V  N+ R   RGV+GNL+GEGR+LGG+ VVG  D G+ +EHREK
Sbjct:   34 PATLAYLADITLQTLDLMP---------RKFKAKELWEASGAVIMVVRRPGCLLCREEALELSKLKAELTLRHVPLYAVVHESLGVEQFSPFFKGDGIFLDAEKHFYGPVERRMF-LSGLLRATVWKNIIRSWKRGVNGNLEGEGRILGGMFVVGPADQGILYEHREK 191          
BLAST of mRNA_H-paniculata_contig4588.11487.1 vs. uniprot
Match: A0A433Q1R3_9FUNG (Peroxiredoxin-like 2A n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433Q1R3_9FUNG)

HSP 1 Score: 144 bits (364), Expect = 9.740e-37
Identity = 73/143 (51.05%), Postives = 100/143 (69.93%), Query Frame = 3
Query:  402 SFSAGDLWKDQPAVVFVVRRPGCPLCREHALDLSEKQPELEAK-GVKLVGVVHEKLGVEEFSGFFKNGEIYFDEKKAFFNALG---MRWEGLSSMLKPSVMSNVKRVKARGVDGNLKGEGRLLGGLLVVGAGDSGVAFEHREK 818
            SF A +LWK +P +V V RRPGC  CRE A +L+ ++  ++ K GV +V V+HE+LG EEF+  F  G +Y+DEKKAF+ ALG    R  GL++ LKPSV  N  R K RGV GN KG+GR LGG+L++  GD+G ++E+RE+
Sbjct:   55 SFKASELWKSKPVLVLVTRRPGCQFCREEAKELAARRDLIQNKLGVDMVSVIHERLGQEEFNENFWKGTMYWDEKKAFYLALGGGRFRMGGLTTFLKPSVWINYARNKKRGVAGNFKGDGRYLGGMLIMRPGDAGPSYEYREQ 197          
BLAST of mRNA_H-paniculata_contig4588.11487.1 vs. uniprot
Match: UPI001CF1C6CB (peroxiredoxin-like 2A n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF1C6CB)

HSP 1 Score: 140 bits (354), Expect = 4.380e-36
Identity = 78/175 (44.57%), Postives = 104/175 (59.43%), Query Frame = 3
Query:  393 TGESFSAGDLWKDQPAVVFVVRRPGCPLCREHALDLSEKQPELEAKGVKLVGVVHEKLGVEEFSGFFKNGEIYFDEKKAFFNALGMRWEGLSSMLKPSVMSNVKRVKARGVDGNLKGEGRLLGGLLVVGAGDSGVAFEHREKARAS*LIRERVVDVDVSRV*ELGLCMRGFHDDY 917
            +G+   A +LW+   AV+ VVRRPG PLCRE AL+LS   PEL+ KGV LVGVVHE+ G +EF  F  +  +Y DE+K F+     RW  +S  L+ SV  +  R K +GV GN  GEGRLLGG+ VVG GD G+  +H+E        RE    V++ +V +    M+ F   Y
Sbjct:   46 SGKHLIASELWRKSGAVIMVVRRPGXPLCREEALELSSLIPELDRKGVNLVGVVHEEKGAKEFQPFLSS-PLYLDEEKKFYGP-EQRWMSISGFLRLSVWRSFFRAKGKGVKGNWLGEGRLLGGVFVVGPGDQGILLDHKE--------REFGDKVELQKVRDAVSKMKFFSSKY 210          
BLAST of mRNA_H-paniculata_contig4588.11487.1 vs. uniprot
Match: A0A1Y1YVC6_9FUNG (Peroxiredoxin-like 2A n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YVC6_9FUNG)

HSP 1 Score: 139 bits (349), Expect = 1.290e-35
Identity = 69/145 (47.59%), Postives = 94/145 (64.83%), Query Frame = 3
Query:  396 GESFSAGDLWKDQPAVVFVVRRPGCPLCREHALDLSEKQPELEAK-GVKLVGVVHEKLGVEEFSGFFKNGEIYFDEKKAFFNALG---MRWEGLSSMLKPSVMSNVKRVKARGVDGNLKGEGRLLGGLLVVGAGDSGVAFEHREK 818
            G    A  LW++ PA++ VVRRPGC LCR+ A DL++++ ++  K G+ +  VVHE+LGVEEF+  F  G +Y DE K FF ALG   + W   SS+L P  + N       GVDGN +GEGR+ GGL +VG GD GV +E++EK
Sbjct:   20 GSKIKASQLWENSPALIMVVRRPGCKLCRKEAKDLADQRTQITEKWGIPMYAVVHEELGVEEFNQEFFQGTVYHDENKGFFKALGGGKLSWANWSSLLNPYTIYNYV---TSGVDGNFQGEGRIYGGLYIVGKGDKGVIYEYKEK 161          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4588.11487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW74_ECTSI1.570e-9077.97Peroxiredoxin-like 2A n=2 Tax=Ectocarpus TaxID=287... [more]
A0A836C9S3_9STRA2.510e-5253.89Peroxiredoxin-like 2A n=1 Tax=Tribonema minus TaxI... [more]
A0A6U1MDW2_9STRA3.350e-4050.67Peroxiredoxin-like 2A n=1 Tax=Fibrocapsa japonica ... [more]
A0A6P8J5V8_ACTTE2.660e-3854.41Peroxiredoxin-like 2A n=1 Tax=Actinia tenebrosa Ta... [more]
UPI0009E5AF1E1.390e-3750.70redox-regulatory protein FAM213A-like n=1 Tax=Orbi... [more]
T1G1A3_HELRO1.490e-3746.20Peroxiredoxin-like 2A n=1 Tax=Helobdella robusta T... [more]
A0A2T7PYM4_POMCA4.170e-3745.83Peroxiredoxin-like 2A n=1 Tax=Pomacea canaliculata... [more]
A0A433Q1R3_9FUNG9.740e-3751.05Peroxiredoxin-like 2A n=2 Tax=Jimgerdemannia flamm... [more]
UPI001CF1C6CB4.380e-3644.57peroxiredoxin-like 2A n=2 Tax=Acropora TaxID=6127 ... [more]
A0A1Y1YVC6_9FUNG1.290e-3547.59Peroxiredoxin-like 2A n=1 Tax=Basidiobolus meristo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4588contigH-paniculata_contig4588:2942..5945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score252.7
Seed ortholog evalue1.2e-64
Seed eggNOG ortholog2880.D7FW74
Preferred nameFAM213A
KEGG rclassRC00671
KEGG koko:K15717
KEGG ReactionR09506
KEGG Pathwayko00590,ko01100,map00590,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0002682,GO:0002761,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0016209,GO:0042221,GO:0044424,GO:0044464,GO:0045595,GO:0045637,GO:0045670,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051716,GO:0055114,GO:0065007,GO:0070887,GO:0097237,GO:0098754,GO:0098869,GO:1902105,GO:1903706,GO:1990748,GO:2000026
EggNOG free text desc.prostaglandin-F synthase activity
EggNOG OGsKOG4498@1,KOG4498@2759
EC1.11.1.20
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size1240
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4588.11487.1prot_H-paniculata_contig4588.11487.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4588 3298..5538 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930372.8153753-UTR-H-paniculata_contig4588:2941..32971622930372.8153753-UTR-H-paniculata_contig4588:2941..3297Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4588 2942..3297 +
1691481262.66108-UTR-H-paniculata_contig4588:2941..32971691481262.66108-UTR-H-paniculata_contig4588:2941..3297Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4588 2942..3297 +
1622930372.8836405-UTR-H-paniculata_contig4588:5538..59451622930372.8836405-UTR-H-paniculata_contig4588:5538..5945Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4588 5539..5945 +
1691481262.6976824-UTR-H-paniculata_contig4588:5538..59451691481262.6976824-UTR-H-paniculata_contig4588:5538..5945Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4588 5539..5945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930372.8358994-CDS-H-paniculata_contig4588:3297..34301622930372.8358994-CDS-H-paniculata_contig4588:3297..3430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4588 3298..3430 +
1691481262.6712408-CDS-H-paniculata_contig4588:3297..34301691481262.6712408-CDS-H-paniculata_contig4588:3297..3430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4588 3298..3430 +
1622930372.8548567-CDS-H-paniculata_contig4588:4202..43521622930372.8548567-CDS-H-paniculata_contig4588:4202..4352Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4588 4203..4352 +
1691481262.6789298-CDS-H-paniculata_contig4588:4202..43521691481262.6789298-CDS-H-paniculata_contig4588:4202..4352Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4588 4203..4352 +
1622930372.8701818-CDS-H-paniculata_contig4588:5344..55381622930372.8701818-CDS-H-paniculata_contig4588:5344..5538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4588 5345..5538 +
1691481262.6869738-CDS-H-paniculata_contig4588:5344..55381691481262.6869738-CDS-H-paniculata_contig4588:5344..5538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4588 5345..5538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4588.11487.1

>prot_H-paniculata_contig4588.11487.1 ID=prot_H-paniculata_contig4588.11487.1|Name=mRNA_H-paniculata_contig4588.11487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
MTVLDTTQPTAETGESFSAGDLWKDQPAVVFVVRRPGCPLCREHALDLSE
KQPELEAKGVKLVGVVHEKLGVEEFSGFFKNGEIYFDEKKAFFNALGMRW
EGLSSMLKPSVMSNVKRVKARGVDGNLKGEGRLLGGLLVVGAGDSGVAFE
HREKARAS*
back to top

mRNA from alignment at H-paniculata_contig4588:2942..5945+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4588.11487.1 ID=mRNA_H-paniculata_contig4588.11487.1|Name=mRNA_H-paniculata_contig4588.11487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3004bp|location=Sequence derived from alignment at H-paniculata_contig4588:2942..5945+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTGTTCTAGTCGTGCTCTCCCAAAGCTGCCTTGTAGTCGACTGCCTCA CTAGCGAAGCTTCTCCACTGACTCCTACTTCTGTACTTCTTGTCAAACTA CCCTCATAGCATTGCCTATGCATACTCTGTGCAAGATTACTCTAGTGGGT AACAACAATGCACTAGGGCACTCATCCGCACCATTTCTGCTTCAACAGAT AATTGCTTGAATTCCACGTGCAGCAAGTTTGCGCCACGTGTCGCCTCATT GCTGCCCGGCTATGTTGCCGACTCCATCCACTAGGGCAACACCGCTACAA CGGCGAACACGAGTCCAGTGACCACATCGTTGATAGAGGATGTCGGACTG CAGCGTATGACGGTGCTGGACACGACGCAGCCTACCGCGGAAACGGGGGA ATCCTTTTCGGCCGGAGATCTTTGGAAGGACCAACCCGCCGTCGTGTTTG TCGTTAGGCGGCCAGGATGCCCGCTCTGTCGTGAGCATGGTGAGTGAGTC AGTCGGTCAGCCACAAAACGGCCATACATGTACCTTGCAAAGATGTTGTT GAGGACTGGGATGTAATTCTGTCGATTGTTTCCAGTAAGGTCGCCGCGGT GATGACTGCTAGATACGAATGAGAGTGTACTCCTGTGGGCCACGTCAGGG TTTGATCTTCACTTTGTCGTACATCTACAACACACTGGGGGTTAGAGCGC AGCTACAATACACCAGACAGACAGTACATACTTGGGCTGAGGACACCTTG TACCTTCTCAAGAGCTCTTCACTTAGTACAACCGTAGTGGTACTTAGGAC TGTAGTTCAAAACGCGTGTTTTCCGGAGGGTGGTTATTTTCGCAGATACA CAAGGAAGAAATATATAAACGAGTAACTCCACAAGCACCGATAGATCATC AAGCTCAACACTCGGTTGCGAACGGAAAGCTAAAATTTGGATCACCTCAG GGTGCTGTCAGAACGCCTGGGGGCGAACTTTTCTCGCACTCGATTTTATC TAATGACTAATGACAACAAGTTCCATGTACGTTCCAAAGAGTACATCTGT CTACTGACAGATGCATCTCAACGATATATTTTCAACGACACAACTCAAGG TATCACTAGCACCATAATTTTCGAGAAAATTGGGCCTGGAAAAATTCGCC CCCATGGGGTTTGACGGCGCCCTACAGTACATGAGAGTTGGCAATTCGGG ATCGTCCGTCCGCATCTTGTAATTCGCCTTGGACACGTCGCTGCATTTAC TGTATCTCCAGCACTTGACCTGAGCGAGAAGCAGCCGGAGCTCGAAGCAA AAGGGGTTAAGCTGGTCGGTGTTGTGCACGAGAAACTCGGTGTGGAAGAA TTCTCGGGGTTCTTCAAGAACGGAGAGATATACTTCGACGAGAAAAAGGC ATTTTTCAACGGTGAGAGTGCGGGATTGCAATTATGATTTATCAAACGCT TTACCTTTGGCCTCTACTTGTAGGGAGGGGGTCGGTCCACTTGTGTGCAA ATCAATCCTGAGGCGCTCTTTTCATCTCATCATTAATTAGGATGTGCGTC TGCGCCTGTAGTCAAGATCCCATATTGTAGAGTAGTGGAAGAGTTAATCG AATGCTCATGACAGTACTTTAACTTGTTCAAATATTATTCAACTACATGT TCATACTGTGATTGGGTCACGGAAGGAACAGCAAACACGCAGTGTAATGC CGATATTGGCTGCTTCGCTGGCAGGGTTTGTCACCATGCCTCGCCAGCAC ATGAAATTTCGGCGTAAAATGGTAGAACACTTTTCCTAGTTGAGTGAGCT CACACAAATACCCACTGCTGTCCCTAGTTATTTTTTTTACGCCCAGGCTT CTCTACTCTAATTTCCCCAGTTTTTGATGTATTGTCTAAATACAGGGTGT CACTCGTGGAAATTATTATTTTGTCTGAAGTATTCATTTCTTCACATTAG CCTCCCTATTTTAATTTTTTTTCTTTTTGCAAGCGGCTTCTAGGGGTAAC CGGTTTCACCTGGCTGGTCGTGATGACCCCTCTCTTTTGTTGGCTAATTG GGCCATGCCGACTCTGCTTCACATGATGCTGCGCTCATCATGGATTATAG CCCGAGTTCCCCACCCTAATTACGACCCGGCTAGGCCCCACTTGAATTAA CAGAATTTCTGTGAGAGGGCCCTACCGCCAACACCGTGGTGAAATGAGGA TTGTCCTCTGCGGACAAGCACCTCTGGGATGCATGCCTCTCTATTGGATA TTTTGCGCAACTGGCACACTAAAGTACATATGCAAGGGTCTCTTTTGGGG GGAAAACTTTCCATGTACAGCGAATCAGCCCATATCAGACACTCCTAACA ATATTTGCTGCCCCTTACACAACCTCTCCCTTTTACCTGTATTCCTTGCT TAGCACTTGGCATGCGATGGGAAGGTTTGTCCTCCATGTTGAAGCCAAGT GTTATGAGCAACGTGAAACGCGTGAAAGCCAGGGGGGTAGACGGGAACCT GAAGGGCGAAGGGAGATTGCTTGGGGGGCTACTGGTTGTGGGTGCTGGAG ATTCGGGAGTGGCGTTCGAGCACAGAGAGAAGGCAAGAGCCAGCTAGCTC ATCAGAGAAAGAGTAGTCGATGTAGATGTATCCCGGGTCTGAGAGTTAGG ATTATGCATGCGGGGGTTTCATGACGATTATCGAGGTGGCAGTACTTGGA ACCAAAGCGGTATCCAGCGAGTTTCAGTCACAGAAACTTGTTGCAGGATC TTTTTCGCGTGATGTGTTACAGGATTATTGATCTCATGCAAGTACCATCT TTATTTCAAGAGTCGGTATTTGTGCTACTTCAGTTTGACTTTGTGTGCCG CTAGGTAGAATGCATGCCTTGTACCTCGTAATGTTGGACCGTAAAAATGC TCTTCAACTCGAAATGGCCAGCAAATCAAAATTCACGTCGCAGTTTCTTG GCCAGCATCGTACGGCAACTGAACGATTACGTGGCATAGAGGAGAGCGAG TAGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4588:2942..5945+

>mRNA_H-paniculata_contig4588.11487.1 ID=mRNA_H-paniculata_contig4588.11487.1|Name=mRNA_H-paniculata_contig4588.11487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig4588:2942..5945+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGTGCTGGACACGACGCAGCCTACCGCGGAAACGGGGGAATCCTT
TTCGGCCGGAGATCTTTGGAAGGACCAACCCGCCGTCGTGTTTGTCGTTA
GGCGGCCAGGATGCCCGCTCTGTCGTGAGCATGATGACGGTGCTGGACAC
GACGCAGCCTACCGCGGAAACGGGGGAATCCTTTTCGGCCGGAGATCTTT
GGAAGGACCAACCCGCCGTCGTGTTTGTCGTTAGGCGGCCAGGATGCCCG
CTCTGTCGTGAGCATGCACTTGACCTGAGCGAGAAGCAGCCGGAGCTCGA
AGCAAAAGGGGTTAAGCTGGTCGGTGTTGTGCACGAGAAACTCGGTGTGG
AAGAATTCTCGGGGTTCTTCAAGAACGGAGAGATATACTTCGACGAGAAA
AAGGCATTTTTCAACGCACTTGACCTGAGCGAGAAGCAGCCGGAGCTCGA
AGCAAAAGGGGTTAAGCTGGTCGGTGTTGTGCACGAGAAACTCGGTGTGG
AAGAATTCTCGGGGTTCTTCAAGAACGGAGAGATATACTTCGACGAGAAA
AAGGCATTTTTCAACGCACTTGGCATGCGATGGGAAGGTTTGTCCTCCAT
GTTGAAGCCAAGTGTTATGAGCAACGTGAAACGCGTGAAAGCCAGGGGGG
TAGACGGGAACCTGAAGGGCGAAGGGAGATTGCTTGGGGGGCTACTGGTT
GTGGGTGCTGGAGATTCGGGAGTGGCGTTCGAGCACAGAGAGAAGGCAAG
AGCCAGCTAGCACTTGGCATGCGATGGGAAGGTTTGTCCTCCATGTTGAA
GCCAAGTGTTATGAGCAACGTGAAACGCGTGAAAGCCAGGGGGGTAGACG
GGAACCTGAAGGGCGAAGGGAGATTGCTTGGGGGGCTACTGGTTGTGGGT
GCTGGAGATTCGGGAGTGGCGTTCGAGCACAGAGAGAAGGCAAGAGCCAG
CTAG
back to top