mRNA_H-paniculata_contig45846.11481.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45846.11481.1
Unique NamemRNA_H-paniculata_contig45846.11481.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45846.11481.1 vs. uniprot
Match: D7FYK6_ECTSI (Aminodeoxychorismate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYK6_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 1.010e-54
Identity = 94/102 (92.16%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:    1 QEYLVGASPEMFVRCERTCQGIRVETCPISGTIARGADPLEDAQQIRTLLASKKEESELTMCTDVDRNDKSRICEPSSVRVLGRRQIEMYSRLIHTVDHVEG 306
            QEYLVGASPEMFVRCERT  GIRVETCPISGTI RGA+PLEDAQ+IR+LL++KKEESELTMCTDVDRNDKSRICEPSSVRVLGRRQIEMYSRLIHTVDHVEG
Sbjct:  319 QEYLVGASPEMFVRCERTRHGIRVETCPISGTIERGANPLEDAQKIRSLLSNKKEESELTMCTDVDRNDKSRICEPSSVRVLGRRQIEMYSRLIHTVDHVEG 420
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BLAST of mRNA_H-paniculata_contig45846.11481.1 vs. uniprot
Match: A0A7S1UJC9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJC9_9STRA)

HSP 1 Score: 177 bits (450), Expect = 5.610e-53
Identity = 88/101 (87.13%), Postives = 95/101 (94.06%), Query Frame = 1 
Query:    4 EYLVGASPEMFVRCERTCQGIRVETCPISGTIARGADPLEDAQQIRTLLASKKEESELTMCTDVDRNDKSRICEPSSVRVLGRRQIEMYSRLIHTVDHVEG 306
            EYLVGASPEMFVR E+T +G+RVETCPISGTIARGAD LEDAQ+I+T+LA+ KEESELTMCTDVDRNDKSRIC P SVRVLGRRQIEMYSRLIHTVDHVEG
Sbjct:   71 EYLVGASPEMFVRVEKTGKGMRVETCPISGTIARGADALEDAQRIKTILANPKEESELTMCTDVDRNDKSRICVPGSVRVLGRRQIEMYSRLIHTVDHVEG 171
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BLAST of mRNA_H-paniculata_contig45846.11481.1 vs. uniprot
Match: A0A835Z6A5_9STRA (Aminodeoxychorismate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6A5_9STRA)

HSP 1 Score: 182 bits (462), Expect = 8.340e-52
Identity = 90/102 (88.24%), Postives = 95/102 (93.14%), Query Frame = 1 
Query:    1 QEYLVGASPEMFVRCERTCQGIRVETCPISGTIARGADPLEDAQQIRTLLASKKEESELTMCTDVDRNDKSRICEPSSVRVLGRRQIEMYSRLIHTVDHVEG 306
            QEYLVGASPEMFVRCERT +G+RVETCPISGTIARGA+ LEDA  +R LLAS KEESELTMCTDVDRNDKSRICEP SVRVLGRRQIEMYS+LIHTVDHVEG
Sbjct:  307 QEYLVGASPEMFVRCERTRRGLRVETCPISGTIARGANALEDAAAVRALLASPKEESELTMCTDVDRNDKSRICEPGSVRVLGRRQIEMYSKLIHTVDHVEG 408
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BLAST of mRNA_H-paniculata_contig45846.11481.1 vs. uniprot
Match: A0A7S0MRS9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MRS9_9CRYP)

HSP 1 Score: 171 bits (433), Expect = 1.800e-51
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = 1 
Query:    1 QEYLVGASPEMFVRCERTCQGIRVETCPISGTIARGADPLEDAQQIRTLLASKKEESELTMCTDVDRNDKSRICEPSSVRVLGRRQIEMYSRLIHTVDHVEG 306
            QEYLVGASPEM+VRC    QG R+ETCPISGTIARGA P+EDA+ IRTLL S KEESELTMCTDVDRNDKSRIC P SVRV+GRRQIEMYSRLIHTVDHVEG
Sbjct:   51 QEYLVGASPEMYVRC----QGKRIETCPISGTIARGATPIEDAENIRTLLNSLKEESELTMCTDVDRNDKSRICRPGSVRVIGRRQIEMYSRLIHTVDHVEG 148
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BLAST of mRNA_H-paniculata_contig45846.11481.1 vs. uniprot
Match: A0A7S3XZ44_HETAK (Aminodeoxychorismate synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ44_HETAK)

HSP 1 Score: 173 bits (439), Expect = 9.130e-50
Identity = 86/101 (85.15%), Postives = 92/101 (91.09%), Query Frame = 1 
Query:    4 EYLVGASPEMFVRCERTCQGIRVETCPISGTIARGADPLEDAQQIRTLLASKKEESELTMCTDVDRNDKSRICEPSSVRVLGRRQIEMYSRLIHTVDHVEG 306
            EYLVGASPEMFVRCERT +G+RVETCPISGTIARG D LEDA +I+ LL + KEESELTMCTDVDRNDKSRIC P SV+VLGRRQIEMYSRLIHTVDHVEG
Sbjct:   72 EYLVGASPEMFVRCERTPRGLRVETCPISGTIARGRDALEDALRIKDLLGNLKEESELTMCTDVDRNDKSRICVPGSVQVLGRRQIEMYSRLIHTVDHVEG 172
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BLAST of mRNA_H-paniculata_contig45846.11481.1 vs. uniprot
Match: A0A7S2MY40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MY40_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.620e-49
Identity = 81/107 (75.70%), Postives = 93/107 (86.92%), Query Frame = 1 
Query:    4 EYLVGASPEMFVRCERTCQG------IRVETCPISGTIARGADPLEDAQQIRTLLASKKEESELTMCTDVDRNDKSRICEPSSVRVLGRRQIEMYSRLIHTVDHVEG 306
            EY+VGASPEMFVRCE   +       +RVETCPISGT+ARGAD LEDAQ++++L+ + KEESELTMCTDVDRNDKSRICEP SV+V+GRRQIEMYSRLIHTVDHVEG
Sbjct:   57 EYMVGASPEMFVRCESIAENDYRPDALRVETCPISGTVARGADALEDAQRVKSLMMNAKEESELTMCTDVDRNDKSRICEPGSVKVIGRRQIEMYSRLIHTVDHVEG 163
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BLAST of mRNA_H-paniculata_contig45846.11481.1 vs. uniprot
Match: W7TEM3_9STRA (Aminodeoxychorismate synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEM3_9STRA)

HSP 1 Score: 176 bits (446), Expect = 3.100e-49
Identity = 85/101 (84.16%), Postives = 93/101 (92.08%), Query Frame = 1 
Query:    4 EYLVGASPEMFVRCERTCQGIRVETCPISGTIARGADPLEDAQQIRTLLASKKEESELTMCTDVDRNDKSRICEPSSVRVLGRRQIEMYSRLIHTVDHVEG 306
            EYL+GASPEMFVRCE+T  G+RVETCPISGTIARG+D LEDA +I+ +L + KEESELTMCTDVDRNDKSRICEP SVRVLGRRQIEMYSRLIHTVDHVEG
Sbjct:  437 EYLIGASPEMFVRCEQTKAGLRVETCPISGTIARGSDALEDAARIKAILTNPKEESELTMCTDVDRNDKSRICEPGSVRVLGRRQIEMYSRLIHTVDHVEG 537
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BLAST of mRNA_H-paniculata_contig45846.11481.1 vs. uniprot
Match: A0A7S3SW94_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3SW94_9SPIT)

HSP 1 Score: 163 bits (412), Expect = 3.100e-48
Identity = 80/101 (79.21%), Postives = 88/101 (87.13%), Query Frame = 1 
Query:    4 EYLVGASPEMFVRCERTCQGIRVETCPISGTIARGADPLEDAQQIRTLLASKKEESELTMCTDVDRNDKSRICEPSSVRVLGRRQIEMYSRLIHTVDHVEG 306
            E+LVGASPEMFVR ER   G+RVETCPISGTI RG D LED + I+T+LA  KEESE+TMCTDVDRNDKSRICE  SV+V+GRRQIEMYSRLIHTVDHVEG
Sbjct:   55 EWLVGASPEMFVRAERNKNGMRVETCPISGTIRRGKDALEDHENIKTILADPKEESEITMCTDVDRNDKSRICEHGSVQVIGRRQIEMYSRLIHTVDHVEG 155
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BLAST of mRNA_H-paniculata_contig45846.11481.1 vs. uniprot
Match: A0A7S2VH45_9STRA (Aminodeoxychorismate synthase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VH45_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.120e-47
Identity = 82/102 (80.39%), Postives = 92/102 (90.20%), Query Frame = 1 
Query:    1 QEYLVGASPEMFVRCERTCQGIRVETCPISGTIARGADPLEDAQQIRTLLASKKEESELTMCTDVDRNDKSRICEPSSVRVLGRRQIEMYSRLIHTVDHVEG 306
            QEY+VGASPEMFVRCE     IRVETCPISGT+ARGAD LEDAQ++++L+ + KEESELTMCTDVDRNDKSRIC P SV+V+GRRQIEMYSRLIHTVDHVEG
Sbjct:  101 QEYMVGASPEMFVRCETVEGDIRVETCPISGTVARGADALEDAQRVKSLMMNAKEESELTMCTDVDRNDKSRICVPGSVQVIGRRQIEMYSRLIHTVDHVEG 202
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BLAST of mRNA_H-paniculata_contig45846.11481.1 vs. uniprot
Match: A0A7S2HFX2_9STRA (Aminodeoxychorismate synthase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HFX2_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.210e-47
Identity = 85/102 (83.33%), Postives = 91/102 (89.22%), Query Frame = 1 
Query:    1 QEYLVGASPEMFVRCERTCQGIRVETCPISGTIARGADPLEDAQQIRTLLASKKEESELTMCTDVDRNDKSRICEPSSVRVLGRRQIEMYSRLIHTVDHVEG 306
            QEYLVGASPEMFVRCE T  G+RVETCPISGTI RG   LEDA +I+ +LA+ KEESELTMCTDVDRNDKSRICEP SVRVLGRRQIEMYS+LIHTVDHVEG
Sbjct:  388 QEYLVGASPEMFVRCESTDGGMRVETCPISGTIGRGNTALEDAARIKEILANPKEESELTMCTDVDRNDKSRICEPGSVRVLGRRQIEMYSKLIHTVDHVEG 489
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45846.11481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYK6_ECTSI1.010e-5492.16Aminodeoxychorismate synthase n=1 Tax=Ectocarpus s... [more]
A0A7S1UJC9_9STRA5.610e-5387.13Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835Z6A5_9STRA8.340e-5288.24Aminodeoxychorismate synthase n=1 Tax=Tribonema mi... [more]
A0A7S0MRS9_9CRYP1.800e-5184.31Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S3XZ44_HETAK9.130e-5085.15Aminodeoxychorismate synthase n=1 Tax=Heterosigma ... [more]
A0A7S2MY40_9STRA1.620e-4975.70Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
W7TEM3_9STRA3.100e-4984.16Aminodeoxychorismate synthase n=2 Tax=Monodopsidac... [more]
A0A7S3SW94_9SPIT3.100e-4879.21Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S2VH45_9STRA1.120e-4780.39Aminodeoxychorismate synthase n=1 Tax=Amphiprora p... [more]
A0A7S2HFX2_9STRA1.210e-4783.33Aminodeoxychorismate synthase n=1 Tax=Dictyocha sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45846contigH-paniculata_contig45846:348..1325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.4
Seed ortholog evalue2e-40
Seed eggNOG ortholog2880.D7FYK6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.anthranilate synthase activity
EggNOG OGsCOG0147@1,COG0512@1,KOG0026@2759,KOG1223@2759
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size309
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45846.11481.1prot_H-paniculata_contig45846.11481.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45846 378..1325 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930371.8238997-UTR-H-paniculata_contig45846:347..3771622930371.8238997-UTR-H-paniculata_contig45846:347..377Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45846 348..377 +
1691481262.078447-UTR-H-paniculata_contig45846:347..3771691481262.078447-UTR-H-paniculata_contig45846:347..377Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45846 348..377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930371.8399787-CDS-H-paniculata_contig45846:377..5471622930371.8399787-CDS-H-paniculata_contig45846:377..547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45846 378..547 +
1691481262.0921097-CDS-H-paniculata_contig45846:377..5471691481262.0921097-CDS-H-paniculata_contig45846:377..547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45846 378..547 +
1622930371.855322-CDS-H-paniculata_contig45846:1216..13251622930371.855322-CDS-H-paniculata_contig45846:1216..1325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45846 1217..1325 +
1691481262.104979-CDS-H-paniculata_contig45846:1216..13251691481262.104979-CDS-H-paniculata_contig45846:1216..1325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45846 1217..1325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45846.11481.1

>prot_H-paniculata_contig45846.11481.1 ID=prot_H-paniculata_contig45846.11481.1|Name=mRNA_H-paniculata_contig45846.11481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MFVRCERTCQGIRVETCPISGTIARGADPLEDAQQIRTLLASKKEESELT
MCTDVDRNDKSRICEPSSVRVLGRRQIEMYSRLIHTVDHVEG*
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mRNA from alignment at H-paniculata_contig45846:348..1325+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45846.11481.1 ID=mRNA_H-paniculata_contig45846.11481.1|Name=mRNA_H-paniculata_contig45846.11481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=978bp|location=Sequence derived from alignment at H-paniculata_contig45846:348..1325+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAATACCTGGTCGGAGCGTCCCCGGAAATGTTTGTTCGGTGTGAGCG
GACGTGTCAAGGTATCCGCGTTGAGACGTGTCCGATCTCCGGCACGATAG
CCAGGGGAGCCGACCCGCTTGAGGACGCGCAGCAGATCCGTACGCTGTTG
GCCAGCAAGAAGGAGGAGTCGGAGCTGACCATGTGCACTGATGTTGACAG
GTGATTCCGTGTGACTAACGCCCGAACGGGTTCGGTAGCTCGTGAACTGA
GCATGACTGGAGGTCTAGTCAGAGGTCTTTTAGTGGGTACAACCCCCACA
CTGCCTACCTGGTTTTCAGTCGAACCGGGGTGGCGCCTACCCCGCAGAGG
AATAAATAACTCTGTTCTGTTATAGGAAAATGTAGAAATACTTGGGTAGA
AATACTTGAGTATGGAAGCATCGGATAAAGGTTTTTGCCTTAGCCTTCCG
GGGGTTAATAAAAAACAAAACAAAAGGTGCTTCCGTGTAAAATGATTAGT
ACCACTGTTGTTAGCAGGTAGTCTTGATTGGGGTTCCTTTGGGAGATTTT
GCGCTTGTGTTGCGCCCGACTTACTCGGTACTTGTTAATTTCTTTCTTTA
TGTTTCGCTCCATCGCCCGTACGTACATACATACATGTACGTACGTACGC
TTTGTGTCTATTTCTTGGCCGTGTAGTTTGGGCCCTACTTCGTTTTCTTC
AAAAAAATTTCTTTGCTTTCGTTCTTGCTTGGGGACTATAGAGAGAGTTG
ATAGTGTGAATGGCTGGCCCGCCCCGAGGGAAGGAGGGAGGATAAGAGAA
ATCGGGATTTGTGATGGTTAGCGCGCGCCGTTTTTCATTTTTTTTATCTT
GTTCACTTGTTACTGGCAGGAATGACAAAAGCCGGATTTGCGAGCCGAGC
TCCGTGCGGGTGCTGGGTCGTCGGCAGATCGAGATGTACTCTCGTCTTAT
TCACACCGTCGACCACGTGGAAGGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig45846:348..1325+

>mRNA_H-paniculata_contig45846.11481.1 ID=mRNA_H-paniculata_contig45846.11481.1|Name=mRNA_H-paniculata_contig45846.11481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig45846:348..1325+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTGTTCGGTGTGAGCGGACGTGTCAAGGTATCCGCGTTGAGACGTG
TCCGATCTCCGGCACGATAGCCAGGGGAGCCGACCCGCTTGAGGACGCGC
AGCAGATCCGTACGCTGTTGGCCAGCAAGAAGGAGGAGTCGGAGCTGACC
ATGTGCACTGATGTTGACAGATGTTTGTTCGGTGTGAGCGGACGTGTCAA
GGTATCCGCGTTGAGACGTGTCCGATCTCCGGCACGATAGCCAGGGGAGC
CGACCCGCTTGAGGACGCGCAGCAGATCCGTACGCTGTTGGCCAGCAAGA
AGGAGGAGTCGGAGCTGACCATGTGCACTGATGTTGACAGGAATGACAAA
AGCCGGATTTGCGAGCCGAGCTCCGTGCGGGTGCTGGGTCGTCGGCAGAT
CGAGATGTACTCTCGTCTTATTCACACCGTCGACCACGTGGAAGGGTAAG
AATGACAAAAGCCGGATTTGCGAGCCGAGCTCCGTGCGGGTGCTGGGTCG
TCGGCAGATCGAGATGTACTCTCGTCTTATTCACACCGTCGACCACGTGG
AAGGGTAA
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