mRNA_H-paniculata_contig4583.11478.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4583.11478.1 vs. uniprot
Match: A0A6H5JJY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY2_9PHAE) HSP 1 Score: 125 bits (315), Expect = 9.290e-30 Identity = 86/147 (58.50%), Postives = 95/147 (64.63%), Query Frame = 2
Query: 533 LPSADDLFSSTIGPDFLAAPSAGQEFVVEAMKR-----TTPKXXXXXXXXXXXXXXXNSGDAFVAKRGRETGVVGSGLPIGIKKPKVGGVGPSGPPPEKGKKKGGVGEKISAKDKVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 958
LPS DLFSST GPDFL AP AGQ+F+V+AMK+ T + XXXXXXX AKR R+ G +G+KKPK G +K K GG EKISAKDKVKGQRLKGQSGIGSDFR WKSDLEMTMRQQYD
Sbjct: 120 LPSVSDLFSSTAGPDFLNAPGAGQDFIVKAMKKEKKKQTAAEATTGDPTAXXXXXXXXXXXGATAKRERDVAAGVRGTAVGVKKPKGGXXXXXXXXVDKRKAAGGK-EKISAKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD 265
BLAST of mRNA_H-paniculata_contig4583.11478.1 vs. uniprot
Match: D7G8J9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8J9_ECTSI) HSP 1 Score: 106 bits (264), Expect = 2.900e-24 Identity = 58/83 (69.88%), Postives = 64/83 (77.11%), Query Frame = 2
Query: 710 AKRGRETGVVGSGLPIGIKKPKVGGVGPSGPPPEKGKKKGGVGEKISAKDKVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 958
AKR R+ G +G+KKPK G GP+GPP +K +K G EKISAKDKVKGQRLKGQSGIGSDFR WKSDLEMTMRQQYD
Sbjct: 30 AKRERDVAAGVGGTAVGVKKPKGGAAGPAGPPVDK-RKAAGDKEKISAKDKVKGQRLKGQSGIGSDFRTWKSDLEMTMRQQYD 111
BLAST of mRNA_H-paniculata_contig4583.11478.1 vs. uniprot
Match: A0A7S2W639_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W639_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 8.850e-12 Identity = 54/142 (38.03%), Postives = 70/142 (49.30%), Query Frame = 2
Query: 533 LPSADDLFSSTIGPDFLAAPSAGQEFVVEAMKRTTPKXXXXXXXXXXXXXXXNSGDAFVAKRGRETGVVGSGLPIGIKKPKVGGVGPSGPPPEKGKKKGGVGEKISAKDKVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 958
LPS D+F+ST GP FLA PS +EF V MK++ + G A G SG P K +K G +K++ K++VK QRL+GQSGIG+DFR WK+D EM MRQQ+D
Sbjct: 20 LPSVADVFASTDGPAFLAQPS--EEFSVSPMKKSRSQPQPKKEPASHSASSKPRGAEATAXXAAPGGA-SSGRPEASKVSDA--------------QKAGTKDKLNRKERVKMQRLRGQSGIGADFRSWKTDEEMRMRQQFD 144
BLAST of mRNA_H-paniculata_contig4583.11478.1 vs. uniprot
Match: A0A7S3XNJ5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNJ5_HETAK) HSP 1 Score: 73.2 bits (178), Expect = 2.710e-11 Identity = 57/147 (38.78%), Postives = 74/147 (50.34%), Query Frame = 2
Query: 518 NTSLPLPSADDLFSSTIGPDFLAAPSAGQEFVVEAMKRTTPKXXXXXXXXXXXXXXXNSGDAFVAKRGRETGVVGSGLPIGIKKPKVGGVGPSGPPPEKGKKKGGVGEKISAKDKVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 958
N LPS DDLF+ST GPDFL++ + +EF+ ++KR + A A T + K+ K S P P KK+ K SAKD+VK QRLKGQ+GIG DFR WK++ EM MRQQ+D
Sbjct: 73 NPETALPSVDDLFASTSGPDFLSS-NVSREFIAPSLKRKSLAKDPEEVARQKLEKKKKVYSATAASG--VTSTEQKAIKFNQKEEKKAS---SAPNPFMDKKEKEA-RKQSAKDRVKNQRLKGQAGIGEDFRQWKTEEEMRMRQQFD 212
BLAST of mRNA_H-paniculata_contig4583.11478.1 vs. uniprot
Match: A0A024UJC6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UJC6_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 6.550e-11 Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 2
Query: 818 KKKGGVGEKISAKDKVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 958
K+KGG G+K S KD+VK QRLKGQSGIGSDF+ WKS+ EM MRQ YD
Sbjct: 132 KRKGGDGDKTSGKDRVKQQRLKGQSGIGSDFKTWKSETEMKMRQGYD 178
BLAST of mRNA_H-paniculata_contig4583.11478.1 vs. uniprot
Match: A0A6G0WZM1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZM1_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.190e-9 Identity = 54/151 (35.76%), Postives = 71/151 (47.02%), Query Frame = 2
Query: 509 AISNTSLPLPSADDLFSSTIGPDFLAAPSAGQEFVVEAMKRTTPKXXXXXXXXXXXXXXXNSGDAFVAKRGRETGVVGSGLPIGIKKPKVGGVGPSGPPPEKGKKKG-GVGEKISAKDKVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 958
A+ +S+ LP DD+FS T P FL + + T K + V + G + GL K PK P ++ K+K G +K S K++VK QRLKGQSGIGSDFR WKSD EM MRQ++D
Sbjct: 27 AVQKSSIELPPVDDIFSETKAPSFLVKAKKNDMETFDIDEETLTKLPPPPPDEVDLAPHTDG----VNRSGVSSMYQFPGLNEEEKIPKR----TKHLPQQRNKRKASGTTDKSSGKERVKQQRLKGQSGIGSDFRTWKSDTEMKMRQEFD 169
BLAST of mRNA_H-paniculata_contig4583.11478.1 vs. uniprot
Match: A0A7S2FM24_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FM24_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.770e-9 Identity = 53/142 (37.32%), Postives = 67/142 (47.18%), Query Frame = 2
Query: 533 LPSADDLFSSTIGPDFLAAPSAGQEFVVEAMKRTTPKXXXXXXXXXXXXXXXNSGDAFVAKRGRETGVVGSGLPIGIKKPKVGGVGPSGPPPEKGKKKGGVGEKISAKDKVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 958
LPS +DLF+ T P FLA P+ F V MK+ K +S KR + P +KK PSG + EK K++VK QR+KGQ+GIG DFRVW+S+ EM MRQQYD
Sbjct: 69 LPSVNDLFAGTSDPSFLAVPTKEDSFTVAPMKKR--KLGGLGSNESAPEKKNDS-----VKRKSHAPPRAAPTPQSVKKHV-----PSGRERK---------EKPDRKERVKQQRMKGQAGIGEDFRVWRSETEMAMRQQYD 189
BLAST of mRNA_H-paniculata_contig4583.11478.1 vs. uniprot
Match: A0A1V9YGD8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGD8_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 2.860e-9 Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 2
Query: 836 GEKISAKDKVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 958
G K+S KD+VK QRL+GQSGIGSDFR WKS+ EM +RQQYD
Sbjct: 142 GNKVSGKDRVKAQRLRGQSGIGSDFRGWKSETEMQLRQQYD 182
BLAST of mRNA_H-paniculata_contig4583.11478.1 vs. uniprot
Match: A0A662XZB5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZB5_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.230e-8 Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 2
Query: 839 EKISAKDKVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 958
EK AKD+VKGQRLKGQ+GIG++FR WKS+ EM MRQQ+D
Sbjct: 139 EKKEAKDRVKGQRLKGQAGIGTEFRSWKSETEMAMRQQFD 178
BLAST of mRNA_H-paniculata_contig4583.11478.1 vs. uniprot
Match: D0NJ84_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NJ84_PHYIT) HSP 1 Score: 63.2 bits (152), Expect = 1.630e-8 Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 2
Query: 839 EKISAKDKVKGQRLKGQSGIGSDFRVWKSDLEMTMRQQYD 958
EK K++VK QRLKGQ+GIGSDFRVWKS+ EM +RQQ+D
Sbjct: 94 EKKDGKERVKNQRLKGQAGIGSDFRVWKSETEMALRQQFD 133 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4583.11478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4583.11478.1 >prot_H-paniculata_contig4583.11478.1 ID=prot_H-paniculata_contig4583.11478.1|Name=mRNA_H-paniculata_contig4583.11478.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=272bp MASGLASLVGGYGSDSDSDDSTETSHAEKATAPRQGEKGKKEADNDAARTback to top mRNA from alignment at H-paniculata_contig4583:10617..12646+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4583.11478.1 ID=mRNA_H-paniculata_contig4583.11478.1|Name=mRNA_H-paniculata_contig4583.11478.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2030bp|location=Sequence derived from alignment at H-paniculata_contig4583:10617..12646+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4583:10617..12646+ >mRNA_H-paniculata_contig4583.11478.1 ID=mRNA_H-paniculata_contig4583.11478.1|Name=mRNA_H-paniculata_contig4583.11478.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at H-paniculata_contig4583:10617..12646+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |