mRNA_H-paniculata_contig45770.11470.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45770.11470.1
Unique NamemRNA_H-paniculata_contig45770.11470.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45770.11470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45770contigH-paniculata_contig45770:437..844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size390
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930370.4054132-UTR-H-paniculata_contig45770:436..4541622930370.4054132-UTR-H-paniculata_contig45770:436..454Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45770 437..454 +
1691481261.495958-UTR-H-paniculata_contig45770:436..4541691481261.495958-UTR-H-paniculata_contig45770:436..454Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig45770 437..454 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930370.4289594-CDS-H-paniculata_contig45770:454..8441622930370.4289594-CDS-H-paniculata_contig45770:454..844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45770 455..844 +
1691481261.5055797-CDS-H-paniculata_contig45770:454..8441691481261.5055797-CDS-H-paniculata_contig45770:454..844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45770 455..844 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45770.11470.1prot_H-paniculata_contig45770.11470.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45770 455..844 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45770.11470.1

>prot_H-paniculata_contig45770.11470.1 ID=prot_H-paniculata_contig45770.11470.1|Name=mRNA_H-paniculata_contig45770.11470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
MEDNYFTTLPEEAFEGMMALEDLSFAFCNLKSLPEGIFQDLSSLKYMYFN
YNELSTLPEGIFQGLTSLEELILGNNYFRTFPDGIFDDLVSLENLWIANN
DLISLSDGIFNGLESLVELTITGNSLDCLP
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mRNA from alignment at H-paniculata_contig45770:437..844+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45770.11470.1 ID=mRNA_H-paniculata_contig45770.11470.1|Name=mRNA_H-paniculata_contig45770.11470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=408bp|location=Sequence derived from alignment at H-paniculata_contig45770:437..844+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGTTGTTACTATATGGATGGAGGACAATTATTTCACGACTTTGCCAGA
GGAGGCATTTGAGGGTATGATGGCTCTTGAAGATTTGTCATTTGCATTCT
GTAATTTGAAGAGCTTGCCGGAGGGGATATTTCAAGATCTCTCATCTCTT
AAGTACATGTACTTCAATTACAATGAATTATCCACATTGCCAGAAGGGAT
ATTTCAGGGTCTCACGTCTTTAGAAGAGTTGATTCTGGGTAATAATTATT
TTCGTACGTTCCCAGACGGTATATTTGACGACCTTGTGTCTCTTGAAAAT
CTGTGGATTGCTAACAATGATCTCATATCATTGTCTGATGGGATATTTAA
TGGTCTAGAATCTCTTGTGGAATTGACCATCACAGGGAATTCTTTGGATT
GTCTTCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig45770:437..844+

>mRNA_H-paniculata_contig45770.11470.1 ID=mRNA_H-paniculata_contig45770.11470.1|Name=mRNA_H-paniculata_contig45770.11470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig45770:437..844+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGACAATTATTTCACGACTTTGCCAGAGGAGGCATTTGAGGGTAT
GATGGCTCTTGAAGATTTGTCATTTGCATTCTGTAATTTGAAGAGCTTGC
CGGAGGGGATATTTCAAGATCTCTCATCTCTTAAGTACATGTACTTCAAT
TACAATGAATTATCCACATTGCCAGAAGGGATATTTCAGGGTCTCACGTC
TTTAGAAGAGTTGATTCTGGGTAATAATTATTTTCGTACGTTCCCAGACG
GTATATTTGACGACCTTGTGTCTCTTGAAAATCTGTGGATTGCTAACAAT
GATCTCATATCATTGTCTGATGGGATATTTAATGGTCTAGAATCTCTTGT
GGAATTGACCATCACAGGGAATTCTTTGGATTGTCTTCCTATGGAGGACA
ATTATTTCACGACTTTGCCAGAGGAGGCATTTGAGGGTATGATGGCTCTT
GAAGATTTGTCATTTGCATTCTGTAATTTGAAGAGCTTGCCGGAGGGGAT
ATTTCAAGATCTCTCATCTCTTAAGTACATGTACTTCAATTACAATGAAT
TATCCACATTGCCAGAAGGGATATTTCAGGGTCTCACGTCTTTAGAAGAG
TTGATTCTGGGTAATAATTATTTTCGTACGTTCCCAGACGGTATATTTGA
CGACCTTGTGTCTCTTGAAAATCTGTGGATTGCTAACAATGATCTCATAT
CATTGTCTGATGGGATATTTAATGGTCTAGAATCTCTTGTGGAATTGACC
ATCACAGGGAATTCTTTGGATTGTCTTCCT
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