mRNA_H-paniculata_contig45745.11464.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45745.11464.1
Unique NamemRNA_H-paniculata_contig45745.11464.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45745.11464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45745contigH-paniculata_contig45745:342..886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size172
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930369.340517-CDS-H-paniculata_contig45745:341..3791622930369.340517-CDS-H-paniculata_contig45745:341..379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45745 342..379 +
1691481261.1553628-CDS-H-paniculata_contig45745:341..3791691481261.1553628-CDS-H-paniculata_contig45745:341..379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45745 342..379 +
1622930369.3569767-CDS-H-paniculata_contig45745:753..8861622930369.3569767-CDS-H-paniculata_contig45745:753..886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45745 754..886 +
1691481261.1648707-CDS-H-paniculata_contig45745:753..8861691481261.1648707-CDS-H-paniculata_contig45745:753..886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45745 754..886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45745.11464.1prot_H-paniculata_contig45745.11464.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45745 342..886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45745.11464.1

>prot_H-paniculata_contig45745.11464.1 ID=prot_H-paniculata_contig45745.11464.1|Name=mRNA_H-paniculata_contig45745.11464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
CVRHETLPARLPSGTSSTPSHSSTGDRKRADVGPKADGHRTASEVGEGLQ
SATPLTT
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mRNA from alignment at H-paniculata_contig45745:342..886+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45745.11464.1 ID=mRNA_H-paniculata_contig45745.11464.1|Name=mRNA_H-paniculata_contig45745.11464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=545bp|location=Sequence derived from alignment at H-paniculata_contig45745:342..886+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGTGAGGCACGAGACCCTCCCAGCACGGCTACCTAGGTAAAGTTACTC
GGTGATGTAAGGACGGTGTGGTATAAGGCGAATTACCCACTCGGACTCCG
GTACACGTTGGTTCGTCGTGTTTCGATCGAGCGGTGCCGTCTAGTAGGGC
GAAGATAGTGACAAATGCAGTATCTCTCCGACGAACGAACAAGAGAGAGT
GAACCGAATATCCTGTGTGGATTTACCGTCCGGACGTCAGGTGGTAGGGA
GTCCCGAAGCGAGACACGGCAGAATAATATAGGACGGAAATCGCTGATAC
CGTGTGTCCCGCTAAATTCCCTGATGCAAGACCCAACATCACCCGTATAC
CCCCGCTCTCGTTGCCGTTCGATTTTCCGTAAATGTTTCATACACTCGGT
GTCCGACGTCAGCGGGACCTCGTCGACTCCGAGTCACTCGTCGACGGGGG
ACCGCAAGCGAGCAGATGTTGGTCCCAAGGCCGACGGTCACCGGACGGCG
AGCGAGGTCGGCGAGGGTCTCCAGTCGGCGACTCCTCTCACCACC
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Coding sequence (CDS) from alignment at H-paniculata_contig45745:342..886+

>mRNA_H-paniculata_contig45745.11464.1 ID=mRNA_H-paniculata_contig45745.11464.1|Name=mRNA_H-paniculata_contig45745.11464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig45745:342..886+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGTGAGGCACGAGACCCTCCCAGCACGGCTACCTAGTGCGTGAGGCAC
GAGACCCTCCCAGCACGGCTACCTAGCGGGACCTCGTCGACTCCGAGTCA
CTCGTCGACGGGGGACCGCAAGCGAGCAGATGTTGGTCCCAAGGCCGACG
GTCACCGGACGGCGAGCGAGGTCGGCGAGGGTCTCCAGTCGGCGACTCCT
CTCACCACCCGGGACCTCGTCGACTCCGAGTCACTCGTCGACGGGGGACC
GCAAGCGAGCAGATGTTGGTCCCAAGGCCGACGGTCACCGGACGGCGAGC
GAGGTCGGCGAGGGTCTCCAGTCGGCGACTCCTCTCACCACC
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