mRNA_H-paniculata_contig4574.11462.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4574.11462.1 vs. uniprot
Match: D7FXW6_ECTSI (ABC transporter ATP-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXW6_ECTSI) HSP 1 Score: 444 bits (1141), Expect = 2.210e-142 Identity = 236/393 (60.05%), Postives = 304/393 (77.35%), Query Frame = 1
Query: 7 FVAKHAALLEAAQEDAVRR-RGISLLAVAKGTVFWVLMATAAGYAVMAVVEEELAYHFGSSRVALVVVQVWFSHQSLQGAFHCMGELGRLRPAAARLQA--MVEDWIDSKARDPGLGAQEGWTNDGPEATDGLRLEGVTVNIAGRTMAALSAVNLHAPAGSVVAIVGEPGSGKTALLQVALGVLKPDGGQAQFQGRPLQDWESEAYRERVAWINQVSARFALTAGENIGAGDPFEFNNREMWAKVAGLSGASAFIEALPLGYDTVLEDSGAQIGGISSSASRGGIRSGLSEGEWQRVMLSRFLMRADVARLLLLDEPFKGIGPRDASRMLAALGAQARATGQVVLVASQDLSVGRWADKTILLEGGSVIEAGPWDDLIVSGGALSAALAARDS 1176
++K++A+LEAA+ R+ R I+ +V +G+V W++M+ A YA+++VVEEELA+ FG++RV L++ QVW ++ SLQGA +G++ RLR AAR+QA + ++ GLG + GW+NDGPEA DGLRL+GV+ +GRT ALS+V+LHAPAGSVVA++G G+GKTALLQ+ALG++K D G+A FQGRPLQ+WE+ AYRERVAW++QVS RF LTAGENIGAGDP EF+NRE+WA+ AGLSGA+ IE+LPLGYDT+LED G SGLSEGEWQR+ L+RFLMRADVA+LLLLDEPFKG+ P +ASRMLAALGAQARATGQVV+VASQDLS+GRWAD T+ LE GSV E+G WDDL+ SGG + A+ D+
Sbjct: 812 LLSKNSAVLEAAEHQEGRKSRIITTRSVVRGSVTWLVMSAFAVYALVSVVEEELAFQFGTARVTLLITQVWLAYASLQGALSGLGQVARLRSTAARMQAIALARPENGGGGKETGLGTEGGWSNDGPEAADGLRLQGVSFTPSGRTRQALSSVDLHAPAGSVVAVLGGAGAGKTALLQLALGLMKADKGEAMFQGRPLQEWETGAYRERVAWLSQVSGRFGLTAGENIGAGDPSEFSNRELWARAAGLSGANTAIESLPLGYDTLLED-----GXXXXXXXXXXXXSGLSEGEWQRLQLARFLMRADVAKLLLLDEPFKGVSPSEASRMLAALGAQARATGQVVVVASQDLSLGRWADATVYLEDGSVSESGRWDDLLASGGPFATAVREHDA 1199
BLAST of mRNA_H-paniculata_contig4574.11462.1 vs. uniprot
Match: A0A6H5KVL8_9PHAE (ABC transporter domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL8_9PHAE) HSP 1 Score: 233 bits (594), Expect = 2.080e-65 Identity = 122/219 (55.71%), Postives = 169/219 (77.17%), Query Frame = 1
Query: 1 QAFVAKHAALLEAAQEDAVRR-RGISLLAVAKGTVFWVLMATAAGYAVMAVVEEELAYHFGSSRVALVVVQVWFSHQSLQGAFHCMGELGRLRPAAARLQAMVEDWIDSKA--RDPGLGAQEGWTNDGPEATDGLRLEGVTVNIAGRTMAALSAVNLHAPAGSVVAIVGEPGSGKTALLQVALGVLKPDGGQAQFQGRPLQDWESEAYRERVAWINQVS 648
Q ++K++A+LEAA+ R+ R I+ +V +G+V W++MA A YA+++VVEEELA+ FG++RV LV+ QVW ++ SLQGA +G++ RLRP AAR+QA+ W ++ +D GLG + GW+NDGPEA DGLRL GV+ +GRT ALS+V+LHAPAGSVVA++G G+GKTALLQ+ALG++K D G+A FQGRPLQ+WE+ AYRERVAW++Q S
Sbjct: 647 QVLLSKYSAVLEAAEHQEGRKSRIITTRSVVRGSVTWLVMAAFAVYALVSVVEEELAFQFGTARVTLVITQVWLAYASLQGALSGLGQVARLRPTAARMQAIALAWPENSGGEKDTGLGTEGGWSNDGPEADDGLRLLGVSFRPSGRTRQALSSVDLHAPAGSVVAVLGGAGAGKTALLQLALGLMKADEGEAMFQGRPLQEWETGAYRERVAWLSQAS 865
BLAST of mRNA_H-paniculata_contig4574.11462.1 vs. uniprot
Match: UPI00034D0FD2 (ABC transporter ATP-binding protein/permease n=1 Tax=Nocardiopsis kunsanensis TaxID=141693 RepID=UPI00034D0FD2) HSP 1 Score: 140 bits (354), Expect = 3.570e-33 Identity = 101/291 (34.71%), Postives = 150/291 (51.55%), Query Frame = 1
Query: 286 ARLQAMVEDWIDSKARDPGLGAQEGWTNDGPEA-TDGLRLEGVTVNIAGRTMAALSAVNLHAPAGSVVAIVGEPGSGKTALLQVALGVLKPDGGQAQFQGRPLQDWESEAYRERVAWINQVSARFALTAGENIGAGDPFEFNNREMWAKVAGLSGASAFIEALPLGYDTVLEDSGAQIGGISSSASRGGIRSGLSEGEWQRVMLSRFLMRADVARLLLLDEPFKGI-GPRDAS---RMLAALGAQARATGQVVLVASQDLSVGRWADKTILLEGGSVIEAGPWDDLIVSGG 1143
A + +VE ++ + G A+EG T + P + T+GL L+ V+ G AL ++ H PAGSV+A+VGE GSGKT L+++ LG+ +PD G + +GR L D +E +R R + Q RF +T GE +G GD + + A+ + A LP G T L G ++GG+ LSEG+WQR L+R MR D L +LDEP + P + + R + A AR TG V +V S S AD +++E G ++E G +L+ GG
Sbjct: 315 AGARRVVEPYLWLRGHVAGELAREGCTEEPPRSLTEGLALDRVSFTYPGTERPALDGISAHLPAGSVIAVVGEYGSGKTTLVKLLLGLYRPDAGTVRVEGRDLADMSTEGWRSRCSAAFQDFGRFEVTFGETVGLGDLDRIGDPDAVARAVREADAEEIAAGLPEGVHTQL---GRRLGGVE-----------LSEGQWQRAALARASMRRDPL-LFVLDEPTASLDAPSEEAIFRRYMERARAHARGTGTVTVVVSHRFSTVAGADLVLVMERGRLVETGTHAELVAVGG 590
BLAST of mRNA_H-paniculata_contig4574.11462.1 vs. uniprot
Match: A0A2N1XH79_9GAMM (ABC transporter permease n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2N1XH79_9GAMM) HSP 1 Score: 139 bits (349), Expect = 1.800e-32 Identity = 90/257 (35.02%), Postives = 133/257 (51.75%), Query Frame = 1
Query: 373 GPEATDGLRLEGVTVNIAGRTMAALSAVNLHAPAGSVVAIVGEPGSGKTALLQVALGVLKPDGGQAQFQGRPLQDWESEAYRERVAWINQVSARFALTAGENIGAGDPFEFNNREMWAKVAGLSGASAFIEALPLGYDTVLEDSGAQIGGISSSASRGGIRSGLSEGEWQRVMLSRFLMRADVARLLLLDEPFKGIGPRDASRMLAALGAQARATGQVVLVASQDLSVGRWADKTILLEGGSVIEAGPWDDLIVSGG 1143
GPE +DG+R E VT G AL ++LH G +A+VG GSGKT L+++ + PD G+ GR L +W+ + R R+ I Q AR+ + GENIGAGD F + W + ASAFI+ALP G+DT Q+G LS G+WQ++ L+R MRA A +L+LDEP + + + + +T ++V++ S S R AD+ I+++ G +IE G L+ G
Sbjct: 361 GPEPSDGIRFEHVTFTYPGADTPALHDISLHIRPGQSLALVGRNGSGKTTLIKLLTRLYPPDSGRIVLDGRELGEWDEDTLRRRIGVIFQDFARYQMRVGENIGAGDVGHFEDAVRWRAASDKGMASAFIDALPAGFDT-------QLGKWFRDGRE------LSGGQWQKIALARAFMRAQ-ADILVLDEPTAAMDAEAEANVFEHF--RGLSTNRIVILISHRFSTVRMADQIIVIQDGRIIEHGSHAQLLAQAG 601
BLAST of mRNA_H-paniculata_contig4574.11462.1 vs. uniprot
Match: W7S6H8_9PSEU (ABC transporter permease/ATP-binding protein n=1 Tax=Kutzneria sp. 744 TaxID=345341 RepID=W7S6H8_9PSEU) HSP 1 Score: 138 bits (347), Expect = 3.300e-32 Identity = 95/260 (36.54%), Postives = 135/260 (51.92%), Query Frame = 1
Query: 376 PEATDGLRLEGVTVNIAGRTMAALSAVNLHAPAGSVVAIVGEPGSGKTALLQVALGVLKPDGGQAQFQGRPLQDWESEAYRERVAWINQVSARFALTAGENIGAGDPFEFNNREMWAKVAGLSGASAFIEALPLGYDTVLEDSGAQIGGISSSASRGGIRSGLSEGEWQRVMLSRFLMRADVARLLLLDEPFKGIGPRDASRMLAALGAQARA----TGQVVLVASQDLSVGRWADKTILLEGGSVIEAGPWDDLIVSGG 1143
P T+G+ V AG AL +++H PAGSVVA+VGE GSGKT L++V +PD G+ G L D E+ A+R R++ Q RFA T G+N+G GD ++RE A + A + LP G+DT+L G +GG+ LSEG+WQ+ L+R MR + L +LDEP + + A+AR TG V ++ S S AD ++L+ G ++EAGP D+LI GG
Sbjct: 351 PVLTEGITFHDVGHTYAGTDRRALDGISVHLPAGSVVAVVGEYGSGKTTLVKVLAKFYRPDSGRVTVDGVDLADLETRAWRARISAAFQDFGRFATTFGQNVGLGDLPHLDDRERVAAAVREADADRVLRRLPDGHDTLL---GRDVGGLE-----------LSEGQWQKTALARASMRPEPL-LFILDEPTASLDAPSEQEIFQRHMARARELGARTGAVSVIVSHRFSTVTGADLILVLDKGRLVEAGPHDELIALGG 595
BLAST of mRNA_H-paniculata_contig4574.11462.1 vs. uniprot
Match: N2J7A2_9PSED (Uncharacterized protein n=16 Tax=Pseudomonadaceae TaxID=135621 RepID=N2J7A2_9PSED) HSP 1 Score: 134 bits (336), Expect = 1.110e-30 Identity = 91/267 (34.08%), Postives = 137/267 (51.31%), Query Frame = 1
Query: 343 LGAQEGWTNDGPEATDGLRLEGVTVNIAGRTMAALSAVNLHAPAGSVVAIVGEPGSGKTALLQVALGVLKPDGGQAQFQGRPLQDWESEAYRERVAWINQVSARFALTAGENIGAGDPFEFNNREMWAKVAGLSGASAFIEALPLGYDTVLEDSGAQIGGISSSASRGGIRSGLSEGEWQRVMLSRFLMRADVARLLLLDEPFKGIGPRDASRMLAALGAQARATGQVVLVASQDLSVGRWADKTILLEGGSVIEAGPWDDLIVSGG 1143
+ A++G G DG+R E V + G + AAL +NLH G +A+VGE GSGKT L+++ + P G+ G LQ+W ++A R+R+ I Q R+ +AGEN+G GD F++ + W + A +S FIE L GY T L +GG LS G+WQ++ LSR MR A +L+LDEP + + + + A G++ ++ S S R AD+ ++LE G +IE G D L+ G
Sbjct: 365 VAAEQGDLRQGKTPGDGIRFEQVGFHYPGVSRAALEGINLHLRPGESLALVGENGSGKTTLIKLLTRLYTPSEGRILLDGSDLQEWNTDALRQRIGVIFQDFIRYQFSAGENLGVGDVEAFDDEQRWQEAAERGRSSDFIERLDQGYQTQL-----------GRWFKGGQE--LSGGQWQKIALSRSYMRTQ-ADILVLDEPTAAMDAAAEAEVFEQF--RQHAQGKMTILISHRFSTVRSADQIVVLEHGRIIEQGRHDALVAQDG 615
BLAST of mRNA_H-paniculata_contig4574.11462.1 vs. uniprot
Match: UPI0018048591 (ABC transporter ATP-binding protein n=1 Tax=Catenulispora sp. TaxID=1962977 RepID=UPI0018048591) HSP 1 Score: 130 bits (326), Expect = 2.050e-29 Identity = 89/260 (34.23%), Postives = 134/260 (51.54%), Query Frame = 1
Query: 376 PEATDGLRLEGVTVNIAGRTMAALSAVNLHAPAGSVVAIVGEPGSGKTALLQVALGVLKPDGGQAQFQGRPLQDWESEAYRERVAWINQVSARFALTAGENIGAGDPFEFNNREMWAKVAGLSGASAFIEALPLGYDTVLEDSGAQIGGISSSASRGGIRSGLSEGEWQRVMLSRFLMRADVARLLLLDEPFKGIGPRDASRMLAALGAQARA----TGQVVLVASQDLSVGRWADKTILLEGGSVIEAGPWDDLIVSGG 1143
P T+G+ V + AG AL +++H PAGSVVA+VGE GSGKT L+++ + D G+ G L ++++ A+R R++ Q RFA T EN+G GD ++RE A+ + A + LP GYDT+L +GG+ LSEG+WQ+ L+R MR + L +LDEP + + A+AR TG V ++ S S AD ++L+ G ++EAGP D+L+ G
Sbjct: 336 PALTEGITFHDVGYSYAGTERRALDGISVHLPAGSVVAVVGEYGSGKTTLVKLLAKFYRADSGRVTVDGVDLTEFDTTAWRSRISAAFQDFGRFATTFTENVGLGDLPRLDDRERVAQAVREADADRVLRRLPDGYDTLLRR---DVGGLE-----------LSEGQWQKTALARASMRTEPL-LFILDEPTASLDAPSEQEIFQRHMARARELGARTGAVTVIVSHRFSTVTGADLILVLDKGRLVEAGPHDELMALDG 580
BLAST of mRNA_H-paniculata_contig4574.11462.1 vs. uniprot
Match: UPI0003472823 (ABC transporter ATP-binding protein/permease n=1 Tax=Nocardiopsis xinjiangensis TaxID=124285 RepID=UPI0003472823) HSP 1 Score: 129 bits (325), Expect = 3.020e-29 Identity = 98/291 (33.68%), Postives = 145/291 (49.83%), Query Frame = 1
Query: 286 ARLQAMVEDWIDSKARDPGLGAQEGWTNDGPEA-TDGLRLEGVTVNIAGRTMAALSAVNLHAPAGSVVAIVGEPGSGKTALLQVALGVLKPDGGQAQFQGRPLQDWESEAYRERVAWINQVSARFALTAGENIGAGDPFEFNNREMWAKVAGLSGASAFIEALPLGYDTVLEDSGAQIGGISSSASRGGIRSGLSEGEWQRVMLSRFLMRADVARLLLLDEPFKGI-GPRDAS---RMLAALGAQARATGQVVLVASQDLSVGRWADKTILLEGGSVIEAGPWDDLIVSGG 1143
A + +VE ++ + G A+EG T + P+ GL L+ V+ G AL ++ H PAG+VVA+VGE GSGKT L+++ G+ +PD G + + R L +E +R R + Q RF +T GE +G GD + + A+ + A LP G T L G ++GG+ LSEG+WQR L+R MR D L +LDEP + P + S R + AR TG V +V S S AD +++E G ++EAG +L+ GG
Sbjct: 320 AGARRVVEPYLWLRDHVAGELAREGATEEPPDTLAAGLALDRVSFTYPGTDRPALDGISAHLPAGTVVAVVGEYGSGKTTLVKLLSGLYRPDTGTVRVEDRDLAGMSTEGWRSRCSAAFQDFGRFEVTFGETVGLGDLDRIGDPDAVARAVRDADAEEIAAGLPEGVHTQL---GRRLGGVE-----------LSEGQWQRAALARASMRRDPL-LFVLDEPTASLDAPSEESIFRRYMERARVHARGTGTVTVVVSHRFSTVAGADLVLVMERGRIVEAGTHAELVAGGG 595
BLAST of mRNA_H-paniculata_contig4574.11462.1 vs. uniprot
Match: UPI0017FA7042 (ABC transporter ATP-binding protein n=1 Tax=Catenulispora sp. TaxID=1962977 RepID=UPI0017FA7042) HSP 1 Score: 129 bits (323), Expect = 4.660e-29 Identity = 91/260 (35.00%), Postives = 131/260 (50.38%), Query Frame = 1
Query: 376 PEATDGLRLEGVTVNIAGRTMAALSAVNLHAPAGSVVAIVGEPGSGKTALLQVALGVLKPDGGQAQFQGRPLQDWESEAYRERVAWINQVSARFALTAGENIGAGDPFEFNNREMWAKVAGLSGASAFIEALPLGYDTVLEDSGAQIGGISSSASRGGIRSGLSEGEWQRVMLSRFLMRADVARLLLLDEPFKGIGPRDASRMLAALGAQARA----TGQVVLVASQDLSVGRWADKTILLEGGSVIEAGPWDDLIVSGG 1143
P DG+ V + G AL +++H PAGSVVA+VGE GSGKT L+++ + D G+ G L D E++ +R RV+ Q RFA T GEN+G GD ++RE A + A + LP GYDT+L G +GG+ LSEG+WQ+ L+R MR + L +LDEP + + A+AR TG V ++ S S AD ++L+ G + EAGP ++L+ G
Sbjct: 318 PVLKDGITFHDVGYSYPGTGRRALDGISVHLPAGSVVAVVGEYGSGKTTLVKLLAKFYRADSGRVTVDGVDLADLETKGWRSRVSAAFQDFGRFATTFGENVGLGDLPHLDDRERVAAAVAEADADRVLRRLPDGYDTLL---GRTVGGLE-----------LSEGQWQKTALARASMRPEPL-LFILDEPTASLDAPSEQEIFQRHMARARELGARTGAVTVIVSHRFSTVTGADLILVLDKGRLTEAGPHEELMALDG 562
BLAST of mRNA_H-paniculata_contig4574.11462.1 vs. uniprot
Match: A0A7V9B5D0_9ACTN (ABC transporter ATP-binding protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9B5D0_9ACTN) HSP 1 Score: 127 bits (319), Expect = 1.680e-28 Identity = 115/377 (30.50%), Postives = 173/377 (45.89%), Query Frame = 1
Query: 40 AQEDAVRRRGISLLAVAKGTVFWVLMATAAGYA--VMAVVEEELAYHFGSSRVALVVVQVWFSHQSLQGAFHCMGELGRLRPAAARLQAMVEDWIDSKARDPGLGAQEGWTNDGP---EATDGLRLEGVTVNIAGRTMAALSAVNLHAPAGSVVAIVGEPGSGKTALLQVALGVLKPDGGQAQFQGRPLQDWESEAYRERVAWINQVSARFALTAGENIGAGDPFEFNNREMWAKVAGLSGASAFIEALPLGYDTVLEDSGAQIGGISSSASRGGIRSGLSEGEWQRVMLSRFLMRADVARLLLLDEPFKGIGPRDASRMLAALGAQARA----TGQVVLVASQDLSVGRWADKTILLEGGSVIEAGPWDDLIVSGG 1143
AQ DA RRG++ A+ W +A AGYA V E +A V L +V V + + A H + L R+ A R Q ++ S+ T+ P TDG+ L+GV G L+ V+LH PAG+ VA++G+ G+GK+ L+++ + +P GG G ++ + + +R R + Q R L AG +G GD ++ A + +S + LP G T L S+ GG+ LS G+WQ++ L+R +MR LL+LDEP + + A A ARA TG + ++ S S R AD ++L+GG V EAG DDL+ GG
Sbjct: 228 AQLDAAARRGVAYTAIG-----W--LAFTAGYAGAVGIAASEAVAGRATVGDVVLALVLVAQVNAQVGEAVHVVATLARIVRVAGRYQWLIRYSAASRPER---------TSPAPVPERLTDGVALDGVAFRYPGTDADVLAGVDLHIPAGTTVAVIGDNGAGKSTLVKLLCRLHEPTGGFISVDGIDVRRLDIDEWRARTSAAFQDFVRLELAAGRTVGVGDLPRIDDDAAVATALERAASSGVVAELPHGLGTQL-----------GSSFDGGVE--LSGGQWQKLALARAMMRPSPL-LLVLDEPTAALDAETEHALFARYAAAARAAAARTGAITVLVSHRFSTVRMADLIVVLDGGRVAEAGSHDDLVARGG 574 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4574.11462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4574.11462.1 >prot_H-paniculata_contig4574.11462.1 ID=prot_H-paniculata_contig4574.11462.1|Name=mRNA_H-paniculata_contig4574.11462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=394bp QAFVAKHAALLEAAQEDAVRRRGISLLAVAKGTVFWVLMATAAGYAVMAVback to top mRNA from alignment at H-paniculata_contig4574:300..12312+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4574.11462.1 ID=mRNA_H-paniculata_contig4574.11462.1|Name=mRNA_H-paniculata_contig4574.11462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12013bp|location=Sequence derived from alignment at H-paniculata_contig4574:300..12312+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4574:300..12312+ >mRNA_H-paniculata_contig4574.11462.1 ID=mRNA_H-paniculata_contig4574.11462.1|Name=mRNA_H-paniculata_contig4574.11462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2364bp|location=Sequence derived from alignment at H-paniculata_contig4574:300..12312+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |