mRNA_H-paniculata_contig4571.11456.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4571.11456.1 vs. uniprot
Match: D8LIV9_ECTSI (Novel protein containing a T-complex protein 11 domain (Zgc:73347) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV9_ECTSI) HSP 1 Score: 399 bits (1025), Expect = 1.880e-127 Identity = 239/403 (59.31%), Postives = 270/403 (67.00%), Query Frame = 2
Query: 128 GGAYRLPDGQLGRLLGNERLAHEILVNPEFQIPTDGADNPDTPSP------EAELTKRFKDVMRRIFWDRLTQSLLPPP------------PXXXAAXXXAEPQGNNPGQNPAERMRQQEA-GAVQEGSKVQAHYRSERGSFYTAMVLKVITQAAXXXXXXXXXXXXXXXXXXGVIVAVDLRYDDDGTVERGVPMSRLRISGDPPDFGPLLSLLAEVREELISLTPNNASLVGEVRAVLGQEKLVEMLEGNKLDARQVQKLVWFIAGRILDLQAPVRSDAARAWLKGFDAEMEAAANSGDERAIIPLLPRAFEFAFAQIEEIKRDMANAHVRLIAPYLARHGAEYERAKFESRLANGAASLINTRAWISRAVQAYLGSDVLDGGPETEAERVKRAAGLRDGRE 1279
GG YRLPDG+LGRLLGNE+LAHEILVN +FQIP D+P E EL +RFKDVMRRIFWDR TQSLLPPP XXX XXX G++ AE + ++ GSKV A Y SERGS+Y A V+ V + GV V D+RYD+DG VERGVP+SRL+ DPPDFGPLL+LL EVREEL+SLTPNN+ LVGEVRAVL QE+L EML LDARQVQ+LV FIAGRIL+LQAPVRSD ARAWLKGFDA MEAA SGD AIIPLLPR FEF FAQ+EEIKRD ANAH+RL+APYLARHGA YERAKFE+RL+ G SL T+AW+S AVQ +LG D GLRDGRE
Sbjct: 288 GGDYRLPDGRLGRLLGNEQLAHEILVNADFQIPAIEEDDPRNSXXXXXXXXEEELARRFKDVMRRIFWDRFTQSLLPPPNXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEDGAEAVVHVTGLPPLRAGSKVHARYGSERGSYYAATVVAV---GSSSDAACGVGGGQVGGERGGVFV--DVRYDEDGMVERGVPVSRLKKLDDPPDFGPLLALLGEVREELVSLTPNNSVLVGEVRAVLSQERLAEMLRDKTLDARQVQRLVGFIAGRILNLQAPVRSDGARAWLKGFDASMEAAIASGDPLAIIPLLPRVFEFVFAQMEEIKRDTANAHIRLVAPYLARHGAPYERAKFEARLSRGDVSLERTKAWLSSAVQGFLGGDAGXXXXXXXXXXXXXXKGLRDGRE 685
BLAST of mRNA_H-paniculata_contig4571.11456.1 vs. uniprot
Match: K8YQD2_NANGC (T-complex 11 like isoform cra b n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YQD2_NANGC) HSP 1 Score: 172 bits (435), Expect = 4.470e-43 Identity = 114/346 (32.95%), Postives = 167/346 (48.27%), Query Frame = 2
Query: 167 LLGNERLAHEILVNPEFQIPTDGADNPDTPSPEA-ELTKRFKDVMRRIFWDRLTQSLLPPPPXXXAAXXXAEPQGNNPGQNPAERMRQQEAGAVQEGSKVQAHYRSERGSFYTAMVLKVITQAAXXXXXXXXXXXXXXXXXXGVIVAVDLRYDDDGTVERGVPMSRLRISGDPPDFGPLLSLLAEVREELISLTPNNASLVGEVRAVLGQEKLVEMLEGNKLDARQVQKLVWFIAGRILDLQAPVRSDAARAWLKGFDAEMEAAANSGDERAIIP-----LLPRAFEFAFAQIEEIKRDMANAHVRLIAPYLARHGAEYERAKFESRLANGAASLINTRAWISRAV 1186
+L NE+LAHEI++NP F I + A E +D M IFWDRL +++ PP Q+ GS Q + S +GS + V V VD+ Y DG ER P+ + R+ DP ++ P L+L+ EVRE+L SLTP L E+RA L ++ L +M LDA + KL+ +I ++ LQAPVR +W+ GF+ E+ A+ ++ IP LLPR F FA+I+E +RD+A+AH++++ PYL +HG EYER KF +R G L+NT AW+ + +
Sbjct: 435 MLLNEKLAHEIILNPTFSISEEKASMSAVRGEFGNEDLGHIRDTMEEIFWDRLVEAMTPP--------------------------LQEGPSDFTSGSIAQIRFGSGQGSLFACKVEAVNEDET-----------------------VDIEYLVDGVKERR-PIHQFRLKDDPLEYEPFLALVDEVREKLTSLTPRRIDLAEELRAHLDKKLLSQMALQGLLDAPAIYKLLKYIFDHLMALQAPVRVAETMSWISGFEKEVHASMSASQHAKYIPSAFVALLPRVFRGIFARIDETQRDIADAHIQMLRPYLVQHGVEYEREKFAARFLTGQWRLLNTEAWLKKVL 730
BLAST of mRNA_H-paniculata_contig4571.11456.1 vs. uniprot
Match: A0A7S2SEJ1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEJ1_9STRA) HSP 1 Score: 147 bits (372), Expect = 8.360e-35 Identity = 107/382 (28.01%), Postives = 166/382 (43.46%), Query Frame = 2
Query: 158 LGRLLGNERLAHEILVNPEFQIPT-----------------DGADNPDTPSPEAELTK-----RFKDVMRRIFWDRLTQSLLPPPPXXXAAXXXAEPQGNNPGQNPAERMRQQEAGAVQEGSKVQAHYRSERGSFYTAMVLKVITQAAXXXXXXXXXXXXXXXXXXGVIVAVDLRYDDDGTVERGVPMSRLRISGDPPDFGPLLSLLAEVREELISLTPNNASLVGEVRAVLGQEKLVEMLEGNKLDARQVQKLVWFIAGRILDLQAPVRSDAARAWLKGFDAEMEAAANSGDERAIIPLLPRAFEFAFAQIEEIKRDMANAHVRLIAPYLARHGA-EYERAKFESRLANGAASLINTRAWISRAVQAYLGSDVLDGGPETE 1234
L L NERLAHE+++NPEFQ+P G P + +L++ R + M+ +FW RL +L P QG G + G+ VQA Y +G+FY A V + D++Y D VE VP+ R++ P D PLL+L+ EVR L + TP L R VL L +MLE LD V +L F+ + +L+APVR+D R W + F +E+ + + ++ LP F F A +++++RD N H+R +AP+ A EYER +F + +L W++ ++ ++ G+ +GG ET+
Sbjct: 398 LDEALVNERLAHELILNPEFQLPALPEPPKFSAPRPHGPLLPGNAPPSREGGQEQLSQQAMLGRMQSTMQELFWQRLVNALTP-----------TTIQGR---------------GDISVGALVQARYGGPQGTFYEAKVTACRDDGSF-----------------------DIQYTQDSVVETSVPLDNFRLADHPLDTRPLLALITEVRTRLEAATPRRPDLHATYREVLDAPLLKQMLEAGVLDLPAVVRLARFVLESVENLEAPVRADRTRVWREDFLGFIESQQAASEPSGLVRALPAFFAFVNATLDQLQRDTVNFHLRSLAPHFRGDAAVEYERQRFRMKAERRLVALSRATQWLTASIPSFCGAQ--EGGTETQ 728
BLAST of mRNA_H-paniculata_contig4571.11456.1 vs. uniprot
Match: W7TR13_9STRA (T-complex 11 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR13_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 3.360e-16 Identity = 56/180 (31.11%), Postives = 93/180 (51.67%), Query Frame = 2
Query: 686 DFGPLLSLLAEVREELISLTPNNASLVGEVRAVLGQEKLVEMLEGNKLDARQVQKLVWFIAGRILDLQAPVRSDAARAWLKGF----DAEMEAAA---------NSGDERAIIPLLPRAFEFAFAQIEEIKRDMANAHVRLIAPYLARHGAEYERAKFESRLANGAASLINTRAWISRAV 1186
DF PLL L+ E+ + LIS+TP+ A L E+ L L ++L + LD++ + ++ F RIL L+AP R+ + WL D ++ A +S + +P + FEF ++++I D+ N+H+R P+ HG +ER++FE RLA G S+ +W+ V
Sbjct: 515 DFSPLLVLVQELADRLISMTPSRADLRDEILGSLDVALLKQVLSKDLLDSQLLFSILRFTGRRILCLEAPARNASTERWLVRLKELEDRVLQQAGGPCVRLSLQDSTVSKQWVPSISPLFEFLLEKVDQIHVDIFNSHIRRATPHCRAHGPSFERSQFEERLAQGLTSVDRVLSWLRGVV 694
BLAST of mRNA_H-paniculata_contig4571.11456.1 vs. uniprot
Match: UPI00077A6F39 (T-complex protein 11-like protein 1 n=2 Tax=Acropora TaxID=6127 RepID=UPI00077A6F39) HSP 1 Score: 81.3 bits (199), Expect = 5.940e-13 Identity = 55/181 (30.39%), Postives = 92/181 (50.83%), Query Frame = 2
Query: 668 ISGDPPDFGPLLSLLAEVREELISLT-PNNASLVGEVRAVLGQEKLVEMLEGNKLDARQVQKLVWFIAGRILDLQAPVRSDAARAWLKGFDAEMEAAANSGDERAIIPLLPRAFEFAFAQIEEIKRDMANAHVRLIAPYLARHGAEYERAKFESRLANGAASLINTRAWISRAVQAYLGSD 1207
+S DPP F LSL+ EV+E ++SL P+++SL ++ VL + + + LD + +L F+ + L AP R D + L + I+ L F+ F+ ++ +K DMAN ++ I P+L EYER KF+ L + A+L++T+AW+ R +A +D
Sbjct: 71 LSHDPPVFNQALSLMGEVKENILSLLLPHHSSLRAQINEVLDLDLIKQQANHGILD---IPRLAQFVVSVLSKLCAPARDDQVKKILHNEN--------------IVDL----FKEVFSLMDGMKVDMANFQLQTIKPHLLLQSVEYERKKFKEYLQSNPAALLSTKAWLKRGAKAATSTD 230
BLAST of mRNA_H-paniculata_contig4571.11456.1 vs. uniprot
Match: A0A067CQ89_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQ89_SAPPC) HSP 1 Score: 79.7 bits (195), Expect = 3.060e-12 Identity = 54/166 (32.53%), Postives = 86/166 (51.81%), Query Frame = 2
Query: 734 ISLTPNNASLVG-------EVRAVLGQEKLVEMLEGNKLDARQVQKLVWF--------IAGRILDLQAPVRSDAARAWLKGFDAEMEAAANSGDERAIIPLLPRAFEFAFAQIEEIKRDMANAHVRLIAPYLARHGAEYERAKFESRLANGAASLINTRAWISRAV 1186
++ T + A +VG ++ VL + L L L+A W + IL +AP R+ + +AWL D E A+ E A + L R +F FA+++EI+ D NAH++++APY+ARHG E+E+ KF +L +GA +L T W++R V
Sbjct: 440 LAATRDRARIVGSFVDLRDQLTTVLKHKALATALPTTHLEALAASSSSWTEWATVLQQMLRAILHGEAPARTSSTQAWL---DRLQETPAS---EAAWVEALVRFLQFGFAKVDEIQIDSMNAHLKVLAPYVARHGVEHEQKKFALKLEHGAITLAATSQWLARHV 599
BLAST of mRNA_H-paniculata_contig4571.11456.1 vs. uniprot
Match: A0A8J5XM08_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XM08_DIALT) HSP 1 Score: 77.0 bits (188), Expect = 2.660e-11 Identity = 58/188 (30.85%), Postives = 87/188 (46.28%), Query Frame = 2
Query: 698 LLSLLAEVREELISLTPNNASLVGEVRAVLGQEKLVEMLEGNKLDARQVQKLVWFIAGRILDLQAPVRSDAARAW-------LKGFDAEMEAAANSGDER------------------AIIPLLPRAFEFAFAQIEEIKRDMANAHVRLIAPYLARHGAEYERAKFESRLANGAASLINTRAWISRAV 1186
+L+L AE+R+ L SL P+ L E+ + LV+ L LDA + L+ ++ + LQAP R A AW ++ DA A A G R + LLP AFEF FA I++I+ D+A+ H++ L+ ER +F+ L++G SL T A+ AV
Sbjct: 619 VLALTAELRDSLASLAPHRPELRAELHERIDLALLVQALAHGALDAAALADLLSYVVDTLRTLQAPSRDAAVDAWAAHILPRMRACDAPAPAPALVGAARDASXXXXXXXADSAPAGERLHELLPAAFEFVFACIDDIRTDIAHFHLQAARAVLSLDSDRLERDRFDEALSSGEVSLRRTHAYAREAV 806
BLAST of mRNA_H-paniculata_contig4571.11456.1 vs. uniprot
Match: W0BCA9_9GAMM (T-complex protein 11 n=4 Tax=Legionella TaxID=445 RepID=W0BCA9_9GAMM) HSP 1 Score: 75.5 bits (184), Expect = 7.510e-11 Identity = 44/174 (25.29%), Postives = 93/174 (53.45%), Query Frame = 2
Query: 668 ISGDPPDFGPLLSLLAEVREELISLTPNNASLVGEVRAVLGQEKLVEMLEGNKLDARQVQKLVWFIAGRILDLQAPVRSDAARAWLKGFDAEMEAAANSGDERAIIPLLPRAFEFAFAQIEEIKRDMANAHVRLIAPYLARHGAEYERAKFESRLANGAASLINTRAWISRAVQ 1189
++ +P + P+L +LAE+RE++ TP N + ++R G++ L + +E L+ R + ++++ + RI +L++P A F +++ +SG+ ++ LL + +F + + +I ++ N H+ +A + E+ER KF+ RLA +L + AW+ V+
Sbjct: 353 VTAEPLNLEPMLEVLAEIREQIALFTPRNRIRIMQLREEFGRKALTDQIEAAGLE-RGLYQIMYALMERIKELESPEHVPETVA----FQNQLDRRISSGE--SVDRLLKQTLDFYYHKFSQISLEITNFHINRARGLVAHNIVEFERRKFQERLAKNQFNLASVLAWVDSIVK 519
BLAST of mRNA_H-paniculata_contig4571.11456.1 vs. uniprot
Match: A0A0A0K9F8_CUCSA (Uncharacterized protein n=5 Tax=Cucumis TaxID=3655 RepID=A0A0A0K9F8_CUCSA) HSP 1 Score: 75.1 bits (183), Expect = 9.860e-11 Identity = 51/173 (29.48%), Postives = 90/173 (52.02%), Query Frame = 2
Query: 677 DPPDFGPLLSLLAEVREELISLTPNNASLVGEVRAVLGQEKLVEMLEGNKLDARQVQKLVWFIAGRILDLQAPVRSDAARAWLKGFDAEMEAAANSGD--ERAIIPLLPRAFEFAFAQIEEIKRDMANAHVRLIAPYL-ARHGAEYERAKFESRLAN---GAASLINTRAWIS 1177
D PDF ++ +L EVR+EL ++P S E+ + E LV++L LD ++L+ F + L AP + + +A + E+ + SG+ +R+ L+ + F QI+++K ++ANAH++++ P + G EY R+ F R + + SL TR W+S
Sbjct: 471 DEPDFSWVIKVLKEVRDELCEMSP--PSWRSEIAEKIDIEILVQILSSGTLDVDYFKQLLNFSVVTLQKLSAPAKENEMKASYQKLMEELGEVSCSGENLKRSFALLMVKGLRFVLHQIQDLKEEIANAHLKMVEPLIKGPAGLEYLRSSFSKRCGSPTDASTSLPLTRQWLS 641
BLAST of mRNA_H-paniculata_contig4571.11456.1 vs. uniprot
Match: A0A2B4RIV4_STYPI (T-complex protein 11-like protein 1 n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4RIV4_STYPI) HSP 1 Score: 73.2 bits (178), Expect = 2.540e-10 Identity = 55/185 (29.73%), Postives = 86/185 (46.49%), Query Frame = 2
Query: 659 RLRISGDPPDFGPLLSLLAEVREELISLT-PNNASLVGEVRAVLGQEKLVEMLEGNKLDARQVQKLVWFIAGRILDLQAPVRSDAARAWLKGFDAEMEAAANSGDERAIIPLLPRAFEFAFAQIEEIKRDMANAHVRLIAPYLARHGAEYERAKFESRLANGAASLINTRAWISRAVQAYLGSDV 1210
R ++ PP F LSLL E++E ++SL P SL + +L + + + + LD + KL I G + + AP R + A+ L D I+ L F F+ I+ +K DMAN ++ I P+L + EYER KF+ L + L++T+ W+ R Q G V
Sbjct: 68 REELNQKPPVFNQALSLLQELKENMLSLLLPYQNSLRTHINEMLDLDLIKQQADHGILD---ISKLAQSIVGFLSKMCAPARDEQAKKILLNED--------------IVDL----FREVFSLIDAMKVDMANFQLQTIKPHLMQQSVEYERKKFKDYLQSNPGGLMSTKVWLKRGAQVATGVGV 231 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4571.11456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4571.11456.1 >prot_H-paniculata_contig4571.11456.1 ID=prot_H-paniculata_contig4571.11456.1|Name=mRNA_H-paniculata_contig4571.11456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=328bp MRRIFWDRLTQSLLPPPPPPPAAPPGAEPQGNNPGQNPAERMRQQEAGAVback to top mRNA from alignment at H-paniculata_contig4571:2751..15262+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4571.11456.1 ID=mRNA_H-paniculata_contig4571.11456.1|Name=mRNA_H-paniculata_contig4571.11456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12512bp|location=Sequence derived from alignment at H-paniculata_contig4571:2751..15262+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4571:2751..15262+ >mRNA_H-paniculata_contig4571.11456.1 ID=mRNA_H-paniculata_contig4571.11456.1|Name=mRNA_H-paniculata_contig4571.11456.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1968bp|location=Sequence derived from alignment at H-paniculata_contig4571:2751..15262+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |