mRNA_H-paniculata_contig4569.11452.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4569.11452.1
Unique NamemRNA_H-paniculata_contig4569.11452.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4569.11452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4569contigH-paniculata_contig4569:10885..14501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_006370.2
Exons4
Model size919
Cds size918
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4569.11452.1prot_H-paniculata_contig4569.11452.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4569 10885..14501 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930367.3552735-CDS-H-paniculata_contig4569:10884..110481622930367.3552735-CDS-H-paniculata_contig4569:10884..11048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4569 10885..11048 -
1691481260.06824-CDS-H-paniculata_contig4569:10884..110481691481260.06824-CDS-H-paniculata_contig4569:10884..11048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4569 10885..11048 -
1622930367.3734593-CDS-H-paniculata_contig4569:11109..114971622930367.3734593-CDS-H-paniculata_contig4569:11109..11497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4569 11110..11497 -
1691481260.0804477-CDS-H-paniculata_contig4569:11109..114971691481260.0804477-CDS-H-paniculata_contig4569:11109..11497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4569 11110..11497 -
1622930367.3898845-CDS-H-paniculata_contig4569:12917..131741622930367.3898845-CDS-H-paniculata_contig4569:12917..13174Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4569 12918..13174 -
1691481260.0901093-CDS-H-paniculata_contig4569:12917..131741691481260.0901093-CDS-H-paniculata_contig4569:12917..13174Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4569 12918..13174 -
1622930367.402928-CDS-H-paniculata_contig4569:14392..145011622930367.402928-CDS-H-paniculata_contig4569:14392..14501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4569 14393..14501 -
1691481260.1006258-CDS-H-paniculata_contig4569:14392..145011691481260.1006258-CDS-H-paniculata_contig4569:14392..14501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4569 14393..14501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4569.11452.1

>prot_H-paniculata_contig4569.11452.1 ID=prot_H-paniculata_contig4569.11452.1|Name=mRNA_H-paniculata_contig4569.11452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=306bp
TFLNSSWYLLIDASGSNLTQDIMFRTVRPISTAEAQRRERGGGSSSYSRG
RGRFRPTVKPRAPAGGAASSSAPQVAAGPSDDGTTGGFQAKGAAATAAAA
GTEGVLKPGGGSDVGDGVEAGKAGLDISPIPPVAIDPADSPIPTPNDHLP
PPHPHDHQYKEHASATAAAARTSAPTSRGTALPTASSRADRATPARTEVE
PGPRGAGIGATTTLPGSSITSGGDSSSGSAVEVAIAAVAGRRAGVGVPGN
VAFLLVLRLLLLANPVLAYLPSREVRSRRLLQQPLLVLLTAAEVLTLIIL
EKMRG*
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mRNA from alignment at H-paniculata_contig4569:10885..14501-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4569.11452.1 ID=mRNA_H-paniculata_contig4569.11452.1|Name=mRNA_H-paniculata_contig4569.11452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3617bp|location=Sequence derived from alignment at H-paniculata_contig4569:10885..14501- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCTTTCTAAACTCATCGTGGTACCTGTTGATCGATGCGAGCGGCAGCAA
TTTGACTCAAGACATCATGTTTAGAACCGTGAGACCAATCTCTACCGCAG
AGGCCCAGCGTGAGTTGAAGTTCTATCAGCAAGCGTGCCTGATCTTCTGT
TGTCTCACCGCGATTCTCTGTGGCGTGTGTGGTTACTTCGTGTCTTTTCG
GCCCAGTTTGAGTAGAGAGAGTTTTATCGTATAGACAATGTGCTGTAAAC
AAGTATGGTTCGCTCTACCAGTGAAGCAAACCCAGCAACTCCAAAGGCGT
AGAGTAGCGTTGGCAAAGGATATGCGATTGCAGGCTTGCCCGCGGGGAAC
GCGGATCCTTGGCGCGATGATGGTTGTAGTGGTTGGGTATTAGGTCTAGT
AAGTAGGATGTTTGTTGTTGTCCAGCTCGTCGCAACCTTTCTATGTTAGG
TGCACACAGATCGGAACTATGGTTCGTTGTGGTACACAGACGGATTGTCT
GTACTTTTGATTCAGGGAGAATCAGTCGCACCGACAATCCATGATTACGA
CTACAGTACATACTCAGCAGCTGTCTATTGTACTCTCTGTGTGTATGTTT
GTACATACACAAAAAATAGTCGAGGAGGCGCATGAGAGGACCTTCTGATT
GAGTGCCAGAGCTCACTCAATCGCTGCATGCATGATTTGATTCTTCGGTT
TTCCCTGGGCCTGTGCGTACTCAGTCAGGGTTACGTCTTCGTCAGTTGGT
TAGTTGGGCACCAACATTTACAGTCGCAGTAATAGTACGGCAGTGCAGAG
TACAGTCACTTCTTCCAGGCACCCAGCCGTTTCCTCTCGTTTCCTCTCGT
TTCCTCTCAAGTATAGGCGCACCCGCGTCTCTGTCAGAGCCCACCGCCGC
CTCTCTGCTGTAGTCTTACTGCTGAATATTTACTCTTTAGCTCCGGTCGG
CCAGTTTCCCAATTGCGTTCGCCGGATCTCAGAGTTCGATCGTCGATTTG
AAACATTGAAGGTTGACATTTTCGGACTTGACACTAATATCGTAATTATG
CCTCCAGGAAGTCGCGGCATCATATCCATGGTTTGCCGTCCTGTTGTGCC
GTACTATACAGTATCCTTGGAGTATGTTGATTCTTTATCAATGGTGAGAA
CTAGGCACTACCGATTGATTGTGTGTCGCGCCCACGAGACGCTGGCAGTA
ACATTCAACATTCGTCCATTATTCGTTATCTGTAAAATTACATACGTTGA
TACGGGAGACACGTGGGATTGATTCTACTACTGTATGCTGCACCACTCTC
TTTTTCGTTTTTCACAATATAACACAGGGCGGGAACGCGGTGGTGGAAGC
AGCAGCTACTCGCGCGGCAGGGGCCGCTTTCGACCCACCGTCAAGCCTCG
CGCCCCTGCCGGCGGCGCAGCCTCCTCGAGCGCTCCGCAGGTGGCCGCCG
GTCCTAGCGATGATGGTACTACAGGTGGTTTCCAGGCGAAAGGGGCGGCG
GCGACAGCGGCGGCTGCGGGCACGGAGGGAGTTTTGAAGCCTGGTGGTGG
TAGTGACGTCGGCGATGGCGTGGAGGCTGGGAAGGTAAGATGATAATGAC
CTCTTGTATTTATATCTATATATATATATTACACATGCGGGATGGATACC
AAGGGATACGGTCAGCTATTCACGATCTGTAAATTTACAGCGAAAGAAAG
GTCTCCTATTTGTTGTATGCATTTTGGTCATGTTTAGGGGATCGTTGATT
CTATCGTGGAGCAGCAAAGGTCGGAGGTGCGGGAACGAGAATTTGGATCG
GTTTGGCGGTGGCTCAAAGTAGTTCGTTCCAAGTCAAGAATATCTTCTTT
GCAGCGTTCCGCATAACGGTACTCACACAGAATTTCTCCTGCGTTAAGGT
TGCCCTCGTGACCCTTGTGAACCCTCGTGCCTGAATTGGGATATTCAACG
ACAAACGAGAACTCACAGTCCTGTTAATGCCGATTTATTCAGCCAAGTGA
AGTTAGATCCCGCTTTCGAAAACATTGGGGATGATGCATAGACCTAACAA
GCAGATTGCGATCACTTGAAGACAAAATGTAAGGAATGTGTGTGCAGCAA
AATGCGGGGCTAGGTGCGAAAAGGTACATGTATCTATTGTTAAAGAACCA
GTCACGTACGTCACGGGCGGGCTGCTACAGCCACGATGTTCTGTGTGCTT
GATGTAGAGGTAGTACGGCTGACAGGCTGCAGAACACACACAGGTTCGAT
CGAGTGGTAATATCCAGCTGTACATCATTGACAGGATGATACAGTGGAGG
TGCGCATCGCGATGGAAGAAACGGACCGTACTGTCGTAGTACCGTTGGTA
TTTTACCACGGCGCGGTATTTGTGCGGTGATAATGAGGTTGCGGCAACAC
AATGAAAGGATACTTACTATTATTATTCTTATTGTTCATTTCTATTTATA
CTTTTTGTCGGATCCGGATAGACAATACTGGAAGGTTAAACTGGCAATTC
TAATAATCCTGTTTATCAGAGGTTAACCGAATGGTGTTATTTTGGTTTCT
TAAAATGAAACGAGTCGAAGAGATGTTAGTAGGTACCAGTATCCCCCAAC
ATACCCGCAGCAGTAGCCATTGTACGCGAGTGTGGCGCCCTGTTGTACGC
GATGTTACCCACAGGCACAGCAGCAGCCTGCCCACAATTCGTGACAGGCG
GAACAGGACAACATGACTATCAATGTACAAATTTGGTATCGATCTTTCGC
CATTTCCCCCCTCAGAAAAGATGCACACACACTGTTACCTTTTGCCTCTT
TACCCCCAGCACATAAGGCTTTTTGGGAAACCTCCACCTTTTGCATGGAA
CGCATGACGACCGCCCTGTGTCGTTGAATATTGCATCAAGTTTCACTCGT
TGCATTAAATCTTACTCTTGAAAAAGAATTGTGGAACCCCCCCCCCCCAC
CTCTCCCCCTGGTCTCTCCTCCCATCAACGGCTCCGACGACCCCGCCCAC
GCAGGCCGGCTTGGACATCAGTCCCATACCTCCAGTCGCCATCGACCCTG
CCGATTCCCCCATCCCAACTCCCAACGACCACCTACCCCCCCCCCATCCT
CACGACCACCAGTACAAAGAACACGCTAGCGCTACAGCCGCGGCAGCTCG
CACCTCGGCCCCTACTTCCCGAGGGACCGCATTGCCCACCGCTTCTTCTC
GCGCGGATCGCGCCACACCTGCACGGACTGAGGTTGAACCCGGACCGCGG
GGTGCGGGGATCGGGGCTACGACGACTCTGCCCGGGTCCTCCATCACCTC
AGGAGGCGATTCTAGTTCTGGTTCTGCTGTAGAGGTAGCGATCGCTGCGG
TCGCGGGGCGGCGGGCGGGTGTTGGAGTTCCTGGAAACGTTGGCAATGGT
GTTGGTGGTGGTGGTGGTGGTGGTGGGTCGGTCTTGCCGCGACCAGGGTC
GAGCTTTTCTTCTAGTCCTGCGGCTTCTTCTGTTGGCAAACCCGGTTCTA
GCATATTTGCCAAGCCGGGAAGTTCGCTCTCGACGCTTGCTGCAGCAACC
GCTGCTAGTGCTGCTGACAGCAGCAGAGGTTCTGACGCTGATTATTCTGG
AAAAGATGCGGGGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4569:10885..14501-

>mRNA_H-paniculata_contig4569.11452.1 ID=mRNA_H-paniculata_contig4569.11452.1|Name=mRNA_H-paniculata_contig4569.11452.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1836bp|location=Sequence derived from alignment at H-paniculata_contig4569:10885..14501- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCTTTCTAAACTCATCGTGGTACCTGTTGATCGATGCGAGCGGCAGCAA
TTTGACTCAAGACATCATGTTTAGAACCGTGAGACCAATCTCTACCGCAG
AGGCCCAGCACCTTTCTAAACTCATCGTGGTACCTGTTGATCGATGCGAG
CGGCAGCAATTTGACTCAAGACATCATGTTTAGAACCGTGAGACCAATCT
CTACCGCAGAGGCCCAGCGGCGGGAACGCGGTGGTGGAAGCAGCAGCTAC
TCGCGCGGCAGGGGCCGCTTTCGACCCACCGTCAAGCCTCGCGCCCCTGC
CGGCGGCGCAGCCTCCTCGAGCGCTCCGCAGGTGGCCGCCGGTCCTAGCG
ATGATGGTACTACAGGTGGTTTCCAGGCGAAAGGGGCGGCGGCGACAGCG
GCGGCTGCGGGCACGGAGGGAGTTTTGAAGCCTGGTGGTGGTAGTGACGT
CGGCGATGGCGTGGAGGCTGGGAAGGGCGGGAACGCGGTGGTGGAAGCAG
CAGCTACTCGCGCGGCAGGGGCCGCTTTCGACCCACCGTCAAGCCTCGCG
CCCCTGCCGGCGGCGCAGCCTCCTCGAGCGCTCCGCAGGTGGCCGCCGGT
CCTAGCGATGATGGTACTACAGGTGGTTTCCAGGCGAAAGGGGCGGCGGC
GACAGCGGCGGCTGCGGGCACGGAGGGAGTTTTGAAGCCTGGTGGTGGTA
GTGACGTCGGCGATGGCGTGGAGGCTGGGAAGGCCGGCTTGGACATCAGT
CCCATACCTCCAGTCGCCATCGACCCTGCCGATTCCCCCATCCCAACTCC
CAACGACCACCTACCCCCCCCCCATCCTCACGACCACCAGTACAAAGAAC
ACGCTAGCGCTACAGCCGCGGCAGCTCGCACCTCGGCCCCTACTTCCCGA
GGGACCGCATTGCCCACCGCTTCTTCTCGCGCGGATCGCGCCACACCTGC
ACGGACTGAGGTTGAACCCGGACCGCGGGGTGCGGGGATCGGGGCTACGA
CGACTCTGCCCGGGTCCTCCATCACCTCAGGAGGCGATTCTAGTTCTGGT
TCTGCTGTAGAGGTAGCGATCGCTGCGGTCGCGGGGCGGCGGGCGGGTGT
TGGAGTTCCTGGAAACGTTGGCCGGCTTGGACATCAGTCCCATACCTCCA
GTCGCCATCGACCCTGCCGATTCCCCCATCCCAACTCCCAACGACCACCT
ACCCCCCCCCCATCCTCACGACCACCAGTACAAAGAACACGCTAGCGCTA
CAGCCGCGGCAGCTCGCACCTCGGCCCCTACTTCCCGAGGGACCGCATTG
CCCACCGCTTCTTCTCGCGCGGATCGCGCCACACCTGCACGGACTGAGGT
TGAACCCGGACCGCGGGGTGCGGGGATCGGGGCTACGACGACTCTGCCCG
GGTCCTCCATCACCTCAGGAGGCGATTCTAGTTCTGGTTCTGCTGTAGAG
GTAGCGATCGCTGCGGTCGCGGGGCGGCGGGCGGGTGTTGGAGTTCCTGG
AAACGTTGCTTTTCTTCTAGTCCTGCGGCTTCTTCTGTTGGCAAACCCGG
TTCTAGCATATTTGCCAAGCCGGGAAGTTCGCTCTCGACGCTTGCTGCAG
CAACCGCTGCTAGTGCTGCTGACAGCAGCAGAGGTTCTGACGCTGATTAT
TCTGGAAAAGATGCGGGGGTAGCTTTTCTTCTAGTCCTGCGGCTTCTTCT
GTTGGCAAACCCGGTTCTAGCATATTTGCCAAGCCGGGAAGTTCGCTCTC
GACGCTTGCTGCAGCAACCGCTGCTAGTGCTGCTGACAGCAGCAGAGGTT
CTGACGCTGATTATTCTGGAAAAGATGCGGGGGTAG
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