mRNA_H-paniculata_contig45664.11448.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45664.11448.1
Unique NamemRNA_H-paniculata_contig45664.11448.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig45664.11448.1 vs. uniprot
Match: A0A1J6IKL5_NICAT (Uncharacterized protein (Fragment) n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6IKL5_NICAT)

HSP 1 Score: 58.5 bits (140), Expect = 7.670e-10
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    1 KHIDERYHFIRELIARKVLRVKYKKGENQPADILTKPLERESFERHRRFL 150
            KHID RYHFIRE IA+K + +KY K  +Q  DI TKPL+ E F+R R FL
Sbjct:   37 KHIDTRYHFIRECIAKKEIELKYVKSHDQVTDIFTKPLKFEDFQRLRSFL 86          
BLAST of mRNA_H-paniculata_contig45664.11448.1 vs. uniprot
Match: A0A1J6JXT2_NICAT (Uncharacterized protein (Fragment) n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6JXT2_NICAT)

HSP 1 Score: 57.4 bits (137), Expect = 2.190e-9
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:    1 KHIDERYHFIRELIARKVLRVKYKKGENQPADILTKPLERESFERHRRFL 150
            KHID RYHFIRE IA+K +++KY K  +Q ADI TKPL+ E F+R R  L
Sbjct:   37 KHIDTRYHFIRECIAKKKVKLKYVKSHDQVADIFTKPLKFEDFQRLRSSL 86          
BLAST of mRNA_H-paniculata_contig45664.11448.1 vs. uniprot
Match: UPI000904D540 (uncharacterized protein LOC109240856 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000904D540)

HSP 1 Score: 55.8 bits (133), Expect = 3.510e-8
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 1
Query:    1 KHIDERYHFIRELIARKVLRVKYKKGENQPADILTKPLERESFERHR 141
            KHID RYHF+RE IA+K +++KY K  +Q ADI TKPL+ + F+R R
Sbjct:  107 KHIDTRYHFVRECIAKKEVKLKYVKSHDQAADIFTKPLKFDDFQRLR 153          
BLAST of mRNA_H-paniculata_contig45664.11448.1 vs. uniprot
Match: A0A4Y1RP38_PRUDU (Disease resistance protein CC-NBS-LRR class family n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RP38_PRUDU)

HSP 1 Score: 56.2 bits (134), Expect = 3.660e-8
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:    1 KHIDERYHFIRELIARKVLRVKYKKGENQPADILTKPLERESFERHRRFL 150
            KHID RYH+IRE +++K + +KY K E+Q ADI TKPL+ E+F R RR L
Sbjct:  132 KHIDTRYHYIRECLSKKDIELKYVKFEDQIADIFTKPLKLETFRRLRRSL 181          
BLAST of mRNA_H-paniculata_contig45664.11448.1 vs. uniprot
Match: A0A2Z6ZV17_9LAMI (Uncharacterized protein n=2 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z6ZV17_9LAMI)

HSP 1 Score: 53.5 bits (127), Expect = 4.090e-8
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:    1 KHIDERYHFIRELIARKVLRVKYKKGENQPADILTKPLERESFERHRRFL 150
            KHID RYHFIRE IA+K + +K+ K  +Q ADI TKPL+ +SFE+ R  L
Sbjct:   14 KHIDTRYHFIRECIAKKEVELKHVKTMDQVADIFTKPLKFDSFEKLRFML 63          
BLAST of mRNA_H-paniculata_contig45664.11448.1 vs. uniprot
Match: A0A540MBX8_MALBA (Uncharacterized protein n=2 Tax=Malus baccata TaxID=106549 RepID=A0A540MBX8_MALBA)

HSP 1 Score: 56.6 bits (135), Expect = 4.580e-8
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 KHIDERYHFIRELIARKVLRVKYKKGENQPADILTKPLERESFERHRRFLM 153
            KHID RYH+IRE IARK ++V+Y K ++Q ADI TKPL++E F R R  ++
Sbjct:  195 KHIDTRYHYIRECIARKDVQVEYVKSQDQVADIFTKPLKQEDFIRLRNSIV 245          
BLAST of mRNA_H-paniculata_contig45664.11448.1 vs. uniprot
Match: UPI0009053C4A (uncharacterized protein LOC109212574 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI0009053C4A)

HSP 1 Score: 56.6 bits (135), Expect = 6.010e-8
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1
Query:    1 KHIDERYHFIRELIARKVLRVKYKKGENQPADILTKPLERESFERHR 141
            KHID RYHFIRE IA+K + +KY K  +Q ADI TKPL+ E F+R R
Sbjct:  254 KHIDTRYHFIRECIAKKEVELKYVKSHDQVADIFTKPLKYEDFQRLR 300          
BLAST of mRNA_H-paniculata_contig45664.11448.1 vs. uniprot
Match: A0A507EMB1_9FUNG (DNA-directed DNA polymerase n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507EMB1_9FUNG)

HSP 1 Score: 56.6 bits (135), Expect = 6.460e-8
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 1
Query:    1 KHIDERYHFIRELIARKVLRVKYKKGENQPADILTKPLERESFERHR 141
            KHI+ RYH+IREL+  K + V Y K  +QPAD+LTKPL RE+F +HR
Sbjct:  529 KHINVRYHYIRELVNTKQVTVTYIKTADQPADLLTKPLGREAFNKHR 575          
BLAST of mRNA_H-paniculata_contig45664.11448.1 vs. uniprot
Match: A0A6H5KVG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVG7_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 8.850e-8
Identity = 30/55 (54.55%), Postives = 36/55 (65.45%), Query Frame = 1
Query:    1 KHIDERYHFIRELIARKVLRVKYKKGENQPADILTKPLERESFERHRRFLMNLPE 165
            KHID R+HFIREL     + V+Y   + Q AD+LTK L R   E HR+ LMNLPE
Sbjct:   84 KHIDVRFHFIRELFKSGRISVEYVSTDEQHADLLTKALCRVKLEYHRKALMNLPE 138          
BLAST of mRNA_H-paniculata_contig45664.11448.1 vs. uniprot
Match: A0A1J6IIF1_NICAT (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=6 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A1J6IIF1_NICAT)

HSP 1 Score: 55.8 bits (133), Expect = 1.200e-7
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1
Query:    1 KHIDERYHFIRELIARKVLRVKYKKGENQPADILTKPLERESFERHR 141
            KHID RYHFIRE IA+K + +KY K  +Q ADI TKPL+ E F+R R
Sbjct:  347 KHIDTRYHFIRESIAKKEVELKYVKSHDQVADIFTKPLKFEDFQRLR 393          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45664.11448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1J6IKL5_NICAT7.670e-1060.00Uncharacterized protein (Fragment) n=1 Tax=Nicotia... [more]
A0A1J6JXT2_NICAT2.190e-960.00Uncharacterized protein (Fragment) n=1 Tax=Nicotia... [more]
UPI000904D5403.510e-857.45uncharacterized protein LOC109240856 n=1 Tax=Nicot... [more]
A0A4Y1RP38_PRUDU3.660e-858.00Disease resistance protein CC-NBS-LRR class family... [more]
A0A2Z6ZV17_9LAMI4.090e-858.00Uncharacterized protein n=2 Tax=Dorcoceras hygrome... [more]
A0A540MBX8_MALBA4.580e-856.86Uncharacterized protein n=2 Tax=Malus baccata TaxI... [more]
UPI0009053C4A6.010e-861.70uncharacterized protein LOC109212574 n=1 Tax=Nicot... [more]
A0A507EMB1_9FUNG6.460e-859.57DNA-directed DNA polymerase n=1 Tax=Chytriomyces c... [more]
A0A6H5KVG7_9PHAE8.850e-854.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1J6IIF1_NICAT1.200e-761.70Retrovirus-related pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45664contigH-paniculata_contig45664:752..919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930367.0138493-CDS-H-paniculata_contig45664:751..9191622930367.0138493-CDS-H-paniculata_contig45664:751..919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45664 752..919 -
1691481259.9347646-CDS-H-paniculata_contig45664:751..9191691481259.9347646-CDS-H-paniculata_contig45664:751..919Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45664 752..919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45664.11448.1prot_H-paniculata_contig45664.11448.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45664 752..919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45664.11448.1

>prot_H-paniculata_contig45664.11448.1 ID=prot_H-paniculata_contig45664.11448.1|Name=mRNA_H-paniculata_contig45664.11448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
KHIDERYHFIRELIARKVLRVKYKKGENQPADILTKPLERESFERHRRFL
MNLPE*
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mRNA from alignment at H-paniculata_contig45664:752..919-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45664.11448.1 ID=mRNA_H-paniculata_contig45664.11448.1|Name=mRNA_H-paniculata_contig45664.11448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig45664:752..919- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCACATAGACGAAAGGTATCACTTCATTCGAGAGTTGATTGCTAGGAA AGTTTTAAGGGTAAAATACAAGAAGGGTGAGAACCAACCGGCTGACATTC TGACTAAACCGCTCGAGCGCGAGTCGTTTGAACGACATCGTCGTTTCTTG ATGAATTTGCCTGAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig45664:752..919-

>mRNA_H-paniculata_contig45664.11448.1 ID=mRNA_H-paniculata_contig45664.11448.1|Name=mRNA_H-paniculata_contig45664.11448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig45664:752..919- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCACATAGACGAAAGGTATCACTTCATTCGAGAGTTGATTGCTAGGAA
AGTTTTAAGGGTAAAATACAAGAAGGGTGAGAACCAACCGGCTGACATTC
TGACTAAACCGCTCGAGCGCGAGTCGTTTGAACGACATCGTCGTTTCTTG
ATGAATTTGCCTGAATGAAAGCACATAGACGAAAGGTATCACTTCATTCG
AGAGTTGATTGCTAGGAAAGTTTTAAGGGTAAAATACAAGAAGGGTGAGA
ACCAACCGGCTGACATTCTGACTAAACCGCTCGAGCGCGAGTCGTTTGAA
CGACATCGTCGTTTCTTGATGAATTTGCCTGAATGA
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