mRNA_H-paniculata_contig4566.11446.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4566.11446.1
Unique NamemRNA_H-paniculata_contig4566.11446.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4566.11446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4566contigH-paniculata_contig4566:4477..5229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size192
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930366.8460393-CDS-H-paniculata_contig4566:4477..45851622930366.8460393-CDS-H-paniculata_contig4566:4477..4585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4566 4478..4585 -
1691481259.8766465-CDS-H-paniculata_contig4566:4477..45851691481259.8766465-CDS-H-paniculata_contig4566:4477..4585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4566 4478..4585 -
1622930366.8636525-CDS-H-paniculata_contig4566:5148..52291622930366.8636525-CDS-H-paniculata_contig4566:5148..5229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4566 5149..5229 -
1691481259.8877096-CDS-H-paniculata_contig4566:5148..52291691481259.8877096-CDS-H-paniculata_contig4566:5148..5229Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4566 5149..5229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4566.11446.1prot_H-paniculata_contig4566.11446.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4566 4478..5229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4566.11446.1

>prot_H-paniculata_contig4566.11446.1 ID=prot_H-paniculata_contig4566.11446.1|Name=mRNA_H-paniculata_contig4566.11446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
LPPEYVGAQVVVEPQAVEESQAASSSQAGAPAPTATEAPTEVVAPLAATP
SALAALAAPASTV
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mRNA from alignment at H-paniculata_contig4566:4477..5229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4566.11446.1 ID=mRNA_H-paniculata_contig4566.11446.1|Name=mRNA_H-paniculata_contig4566.11446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=753bp|location=Sequence derived from alignment at H-paniculata_contig4566:4477..5229- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACCGCCCGAGTATGTCGGCGCGCAGGTTGTTGTTGAGCCGCAGGCGGT
CGAGGAGTCGCAAGCCGCGTCCTCTTCACAGGTATCGAGTGGTGGTCTGT
CAAAAGGCACATCTGTACGTAGAACACATGATACCCCTGCCCGCTCTCTT
TCTACTTTTTTTAACTTATCTTGAATAATATTCGTCTTCTAGCTAGTTTT
TTTTTTTATGTTTGCATAGTTGCGAAATCTGAAAGAAGAAAAAACAAACG
GTCCAGCGAGATGACATACGTTCTGATTTGAGGAAAATTTGTTCGAGAGT
TCTTCCTTGAATGGTCCGTTTTTTGGTTTGTTATTTCACGATTTTTGCTA
CAGCAGTAGATGCAAACATGGGTAGGTCCGCGTAGTACCCGAATAGATAA
TGACAATACTTGCAACATGGTCGTGGTTTGTGGTTTGTTCATGCTGACCC
TCTTGATGCATCAACTGAATGATGTCCACATCCGCATAGCACCTGAATAG
ATGGATTAATTATTGACAATACAATCAATACTTGTAACAAGATTAAGGTT
ATATACGCTCTTTAAGTTGCTTCTTCTGAAGTATCTCTACTAAAATAAAT
TGTGACACAAGTCGACTGAATCATGTATATTTTTGCTTCATCAGGCGGGC
GCTCCTGCTCCGACAGCGACAGAAGCGCCGACGGAAGTCGTTGCTCCGCT
TGCGGCGACCCCCTCAGCTCTCGCTGCTCTCGCTGCTCCCGCGTCGACTG
TAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4566:4477..5229-

>mRNA_H-paniculata_contig4566.11446.1 ID=mRNA_H-paniculata_contig4566.11446.1|Name=mRNA_H-paniculata_contig4566.11446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig4566:4477..5229- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACCGCCCGAGTATGTCGGCGCGCAGGTTGTTGTTGAGCCGCAGGCGGT
CGAGGAGTCGCAAGCCGCGTCCTCTTCACAGCTACCGCCCGAGTATGTCG
GCGCGCAGGTTGTTGTTGAGCCGCAGGCGGTCGAGGAGTCGCAAGCCGCG
TCCTCTTCACAGGCGGGCGCTCCTGCTCCGACAGCGACAGAAGCGCCGAC
GGAAGTCGTTGCTCCGCTTGCGGCGACCCCCTCAGCTCTCGCTGCTCTCG
CTGCTCCCGCGTCGACTGTAGCGGGCGCTCCTGCTCCGACAGCGACAGAA
GCGCCGACGGAAGTCGTTGCTCCGCTTGCGGCGACCCCCTCAGCTCTCGC
TGCTCTCGCTGCTCCCGCGTCGACTGTA
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