mRNA_H-paniculata_contig45644.11444.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45644.11444.1
Unique NamemRNA_H-paniculata_contig45644.11444.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45644.11444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45644contigH-paniculata_contig45644:48..407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930366.638537-CDS-H-paniculata_contig45644:47..1371622930366.638537-CDS-H-paniculata_contig45644:47..137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45644 48..137 +
1691481259.8034399-CDS-H-paniculata_contig45644:47..1371691481259.8034399-CDS-H-paniculata_contig45644:47..137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45644 48..137 +
1622930366.6536024-CDS-H-paniculata_contig45644:218..4071622930366.6536024-CDS-H-paniculata_contig45644:218..407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45644 219..407 +
1691481259.8116508-CDS-H-paniculata_contig45644:218..4071691481259.8116508-CDS-H-paniculata_contig45644:218..407Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45644 219..407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45644.11444.1prot_H-paniculata_contig45644.11444.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45644 48..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45644.11444.1

>prot_H-paniculata_contig45644.11444.1 ID=prot_H-paniculata_contig45644.11444.1|Name=mRNA_H-paniculata_contig45644.11444.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
RCGKRGHDLYACPQIADEGACLAEAETEIEEEVLYVDSEGLEYPKVGGTE
IWICDNGATNHMTHDSDFLFNYQECDGHVRLADVNRLPIEGVG
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mRNA from alignment at H-paniculata_contig45644:48..407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45644.11444.1 ID=mRNA_H-paniculata_contig45644.11444.1|Name=mRNA_H-paniculata_contig45644.11444.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig45644:48..407+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATGTGGTAAGCGTGGTCACGACTTGTATGCGTGCCCCCAGATCGCCGA
TGAAGGTGCTTGTTTGGCTGAAGCTGAAACAGAGATTGAAGTTGAAGAGG
CGCTCAAGGTTGACCTGGGCGAAGACGAGTTCATCGCGGCATACATCGCG
TCGACTTCCACCACAGGCAAGGAAGAGGTTTTATATGTGGACTCTGAGGG
GTTAGAATATCCTAAGGTGGGGGGGACGGAAATCTGGATTTGTGATAATG
GTGCAACGAATCACATGACCCATGATTCAGATTTTCTTTTTAATTACCAG
GAATGTGATGGGCACGTACGCCTTGCAGATGTTAATCGTCTCCCGATCGA
AGGAGTTGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig45644:48..407+

>mRNA_H-paniculata_contig45644.11444.1 ID=mRNA_H-paniculata_contig45644.11444.1|Name=mRNA_H-paniculata_contig45644.11444.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig45644:48..407+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATGTGGTAAGCGTGGTCACGACTTGTATGCGTGCCCCCAGATCGCCGA
TGAAGGTGCTTGTTTGGCTGAAGCTGAAACAGAGATTGAACGATGTGGTA
AGCGTGGTCACGACTTGTATGCGTGCCCCCAGATCGCCGATGAAGGTGCT
TGTTTGGCTGAAGCTGAAACAGAGATTGAAGAAGAGGTTTTATATGTGGA
CTCTGAGGGGTTAGAATATCCTAAGGTGGGGGGGACGGAAATCTGGATTT
GTGATAATGGTGCAACGAATCACATGACCCATGATTCAGATTTTCTTTTT
AATTACCAGGAATGTGATGGGCACGTACGCCTTGCAGATGTTAATCGTCT
CCCGATCGAAGGAGTTGGCGAAGAGGTTTTATATGTGGACTCTGAGGGGT
TAGAATATCCTAAGGTGGGGGGGACGGAAATCTGGATTTGTGATAATGGT
GCAACGAATCACATGACCCATGATTCAGATTTTCTTTTTAATTACCAGGA
ATGTGATGGGCACGTACGCCTTGCAGATGTTAATCGTCTCCCGATCGAAG
GAGTTGGC
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