mRNA_H-paniculata_contig4560.11435.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4560.11435.1
Unique NamemRNA_H-paniculata_contig4560.11435.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4560.11435.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 3.840e-26
Identity = 52/101 (51.49%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:    1 MEQPDTCPLEFLELFLQSNLTALGEKYRPICMGSTMRRTLAAGVVRQYRPKLEEVNLPERQYGVAVSGGAELMGLRAIAHHQLGHWLLALDCNDVFNSIKR 303
            +  P+T P EF  L+ QS+L ALGEK RP+C+G T RR +AAG VR+++PKLEE+     Q+GVAV+GG E + + A   HQ GHW++  DC+D FN+ KR
Sbjct:   45 INDPNTVPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSDAFNTGKR 145
[Close]
BLAST of mRNA_H-paniculata_contig4560.11435.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 2.450e-25
Identity = 49/101 (48.51%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 MEQPDTCPLEFLELFLQSNLTALGEKYRPICMGSTMRRTLAAGVVRQYRPKLEEVNLPERQYGVAVSGGAELMGLRAIAHHQLGHWLLALDCNDVFNSIKR 303
            +  P+  P EF  L+ +S+L ALGEK RP+C+G T RR +AAG VR+++PKLEE+     Q+GVAV+GG E + + A   HQ GHW++  DC++ FN+ KR
Sbjct:   53 INDPNAFPPEFWTLWKRSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKR 153
[Close]
BLAST of mRNA_H-paniculata_contig4560.11435.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 4.380e-25
Identity = 51/101 (50.50%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:    1 MEQPDTCPLEFLELFLQSNLTALGEKYRPICMGSTMRRTLAAGVVRQYRPKLEEVNLPERQYGVAVSGGAELMGLRAIAHHQLGHWLLALDCNDVFNSIKR 303
            +  P+T P EF  L+ QS+L ALGEK RP+C+G T RR +AAG VRQ++PKLEE+     Q+GVAV+GG E + + A   HQ G+W++  DC++ FN+ KR
Sbjct:  591 VNDPNTFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVRQWKPKLEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKR 691
[Close]
BLAST of mRNA_H-paniculata_contig4560.11435.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 8.460e-25
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 MEQPDTCPLEFLELFLQSNLTALGEKYRPICMGSTMRRTLAAGVVRQYRPKLEEVNLPERQYGVAVSGGAELMGLRAIAHHQLGHWLLALDCNDVFNSIKR 303
            +  P+  P EF  L+ QS+L ALGEK RP+C+G T RR +AAG VR+++PKLEE+     Q+GVAV+GG E + + A   HQ GHW++  DC++ FN+ KR
Sbjct:  143 INDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKR 243
[Close]
BLAST of mRNA_H-paniculata_contig4560.11435.1 vs. uniprot
Match: A0A6H5KDD0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD0_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.060e-24
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 MEQPDTCPLEFLELFLQSNLTALGEKYRPICMGSTMRRTLAAGVVRQYRPKLEEVNLPERQYGVAVSGGAELMGLRAIAHHQLGHWLLALDCNDVFNSIKR 303
            +  P+  P EF  L+ QS+L ALGEK RP+C+G T RR +AAG VR+++PKLEE+     Q+GVAV+GG E + + A   HQ GHW++  DC++ FN+ KR
Sbjct:    9 INDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKR 109
[Close]
BLAST of mRNA_H-paniculata_contig4560.11435.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.940e-24
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 MEQPDTCPLEFLELFLQSNLTALGEKYRPICMGSTMRRTLAAGVVRQYRPKLEEVNLPERQYGVAVSGGAELMGLRAIAHHQLGHWLLALDCNDVFNSIKR 303
            +  P+  P EF  L+ QS+L ALGEK RP+C+G T RR +AAG VR+++PKLEE+     Q+GVAV+GG E + + A   HQ GHW++  DC++ FN+ KR
Sbjct:   52 INDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKR 152
[Close]
BLAST of mRNA_H-paniculata_contig4560.11435.1 vs. uniprot
Match: A0A6H5KAK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK8_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.990e-24
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 MEQPDTCPLEFLELFLQSNLTALGEKYRPICMGSTMRRTLAAGVVRQYRPKLEEVNLPERQYGVAVSGGAELMGLRAIAHHQLGHWLLALDCNDVFNSIKR 303
            +  P+  P EF  L+ QS+L ALGEK RP+C+G T RR +AAG VR+++PKLEE+     Q+GVAV+GG E + + A   HQ GHW++  DC++ FN+ KR
Sbjct:  371 INDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKR 471
[Close]
BLAST of mRNA_H-paniculata_contig4560.11435.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.010e-24
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 MEQPDTCPLEFLELFLQSNLTALGEKYRPICMGSTMRRTLAAGVVRQYRPKLEEVNLPERQYGVAVSGGAELMGLRAIAHHQLGHWLLALDCNDVFNSIKR 303
            +  P+  P EF  L+ QS+L ALGEK RP+C+G T RR +AAG VR+++PKLEE+     Q+GVAV+GG E + + A   HQ GHW++  DC++ FN+ KR
Sbjct:  442 INDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKR 542
[Close]
BLAST of mRNA_H-paniculata_contig4560.11435.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.040e-24
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 MEQPDTCPLEFLELFLQSNLTALGEKYRPICMGSTMRRTLAAGVVRQYRPKLEEVNLPERQYGVAVSGGAELMGLRAIAHHQLGHWLLALDCNDVFNSIKR 303
            +  P+  P EF  L+ QS+L ALGEK RP+C+G T RR +AAG VR+++PKLEE+     Q+GVAV+GG E + + A   HQ GHW++  DC++ FN+ KR
Sbjct:  421 INDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKR 521
[Close]
BLAST of mRNA_H-paniculata_contig4560.11435.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.710e-24
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:    1 MEQPDTCPLEFLELFLQSNLTALGEKYRPICMGSTMRRTLAAGVVRQYRPKLEEVNLPERQYGVAVSGGAELMGLRAIAHHQLGHWLLALDCNDVFNSIKR 303
            ++ P   P EF  L  QS+L ALGEK RP+C+G T RR +AAG VR+++PKLEE+     Q+GVAV+GG E + + A   HQ GHW++  DC++ FN+ KR
Sbjct:  420 IKDPHAFPPEFWTLLKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKR 520
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4560.11435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0V7_9PHAE3.840e-2651.49Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L4Y4_9PHAE2.450e-2548.51Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JH58_9PHAE4.380e-2550.50Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KR59_9PHAE8.460e-2549.50Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KDD0_9PHAE1.060e-2449.50Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE1.940e-2449.50Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KAK8_9PHAE1.990e-2449.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI32_9PHAE2.010e-2449.50Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE2.040e-2449.50Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKQ2_9PHAE3.710e-2449.50Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4560contigH-paniculata_contig4560:2235..2540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size307
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930365.746237-CDS-H-paniculata_contig4560:2234..25401622930365.746237-CDS-H-paniculata_contig4560:2234..2540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4560 2235..2540 +
1691481259.397097-CDS-H-paniculata_contig4560:2234..25401691481259.397097-CDS-H-paniculata_contig4560:2234..2540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4560 2235..2540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4560.11435.1prot_H-paniculata_contig4560.11435.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4560 2235..2540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4560.11435.1

>prot_H-paniculata_contig4560.11435.1 ID=prot_H-paniculata_contig4560.11435.1|Name=mRNA_H-paniculata_contig4560.11435.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MEQPDTCPLEFLELFLQSNLTALGEKYRPICMGSTMRRTLAAGVVRQYRP
KLEEVNLPERQYGVAVSGGAELMGLRAIAHHQLGHWLLALDCNDVFNSIK
RA
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mRNA from alignment at H-paniculata_contig4560:2235..2540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4560.11435.1 ID=mRNA_H-paniculata_contig4560.11435.1|Name=mRNA_H-paniculata_contig4560.11435.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig4560:2235..2540+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAACAACCCGATACCTGCCCGCTGGAGTTCTTGGAGTTGTTCCTCCA
GAGCAACCTCACGGCGCTCGGGGAGAAGTACCGCCCGATTTGCATGGGAT
CTACGATGAGGCGTACTTTGGCCGCTGGGGTTGTCAGGCAGTACAGGCCG
AAACTGGAGGAGGTTAACTTGCCGGAGCGGCAATACGGAGTAGCGGTTTC
GGGTGGCGCGGAGCTCATGGGCCTCCGCGCGATAGCACATCACCAATTGG
GACATTGGCTTCTTGCCCTCGACTGTAACGATGTATTCAACTCCATCAAG
CGGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig4560:2235..2540+

>mRNA_H-paniculata_contig4560.11435.1 ID=mRNA_H-paniculata_contig4560.11435.1|Name=mRNA_H-paniculata_contig4560.11435.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig4560:2235..2540+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAACAACCCGATACCTGCCCGCTGGAGTTCTTGGAGTTGTTCCTCCA
GAGCAACCTCACGGCGCTCGGGGAGAAGTACCGCCCGATTTGCATGGGAT
CTACGATGAGGCGTACTTTGGCCGCTGGGGTTGTCAGGCAGTACAGGCCG
AAACTGGAGGAGGTTAACTTGCCGGAGCGGCAATACGGAGTAGCGGTTTC
GGGTGGCGCGGAGCTCATGGGCCTCCGCGCGATAGCACATCACCAATTGG
GACATTGGCTTCTTGCCCTCGACTGTAACGATGTATTCAACTCCATCAAG
CGGGCGATGGAACAACCCGATACCTGCCCGCTGGAGTTCTTGGAGTTGTT
CCTCCAGAGCAACCTCACGGCGCTCGGGGAGAAGTACCGCCCGATTTGCA
TGGGATCTACGATGAGGCGTACTTTGGCCGCTGGGGTTGTCAGGCAGTAC
AGGCCGAAACTGGAGGAGGTTAACTTGCCGGAGCGGCAATACGGAGTAGC
GGTTTCGGGTGGCGCGGAGCTCATGGGCCTCCGCGCGATAGCACATCACC
AATTGGGACATTGGCTTCTTGCCCTCGACTGTAACGATGTATTCAACTCC
ATCAAGCGGGCG
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