mRNA_H-paniculata_contig45584.11432.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig45584.11432.1
Unique NamemRNA_H-paniculata_contig45584.11432.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig45584.11432.1 vs. uniprot
Match: A0A6H5KNZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNZ2_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.360e-15
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 ESGDWPFRAAVGSLLWLATVTRPDIANAVRDFARHSHNPCARHWAGVLKVLSYL 162
            E+GD PFR  VGSL+W+A  TRPDI+NA+R  A HSH P  RHW    K+++YL
Sbjct:    5 EAGDVPFREVVGSLMWIANQTRPDISNALRAVAGHSHEPKKRHWKVTQKIMNYL 58
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BLAST of mRNA_H-paniculata_contig45584.11432.1 vs. uniprot
Match: A0A6H5L8G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G9_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 7.360e-15
Identity = 35/62 (56.45%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:    1 ESGDWPFRAAVGSLLWLATVTRPDIANAVRDFARHSHNPCARHWAGVLKVLSYLNKNRSLGL 186
            E+GD PFR  VG L+W+A+ TRPDI+NAVR  ARHSH P   HW    KVL+YL     L L
Sbjct:   22 EAGDVPFREVVGCLMWIASQTRPDISNAVRAVARHSHEPKLSHWKAAPKVLNYLLGTAHLSL 83
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BLAST of mRNA_H-paniculata_contig45584.11432.1 vs. uniprot
Match: A0A6H5JW47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW47_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.130e-14
Identity = 34/62 (54.84%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    1 ESGDWPFRAAVGSLLWLATVTRPDIANAVRDFARHSHNPCARHWAGVLKVLSYLNKNRSLGL 186
            E+GD PFR  VG L+W+A  TRPDI+NAVR  ARHSH P   HW    K+L+YL     L L
Sbjct:    5 EAGDVPFREVVGCLMWIACQTRPDISNAVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSL 66
[Close]
BLAST of mRNA_H-paniculata_contig45584.11432.1 vs. uniprot
Match: A0A6H5KEI7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI7_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.830e-14
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 ESGDWPFRAAVGSLLWLATVTRPDIANAVRDFARHSHNPCARHWAGVLKVLSYL 162
            E+GD PFR  VGSL+W+A  TRPDI+NA R  ARHSH P   HW    K+L+YL
Sbjct:  109 EAGDVPFREVVGSLMWIANQTRPDISNAARAVARHSHEPKKSHWKAAQKILNYL 162
[Close]
BLAST of mRNA_H-paniculata_contig45584.11432.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.060e-14
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    4 SGDWPFRAAVGSLLWLATVTRPDIANAVRDFARHSHNPCARHWAGVLKVLSYLNKNRSLGL 186
            +GD PFR  VGSL+W+A  TRPDI+NAVR  ARHSH P   HW    K+L+YL +   L L
Sbjct:  267 AGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTL 327
[Close]
BLAST of mRNA_H-paniculata_contig45584.11432.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.520e-14
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    4 SGDWPFRAAVGSLLWLATVTRPDIANAVRDFARHSHNPCARHWAGVLKVLSYLNKNRSLGL 186
            +GD PFR  VGSL+W+A  TRPDI+NAVR  ARHSH P   HW    K+L+YL +   L L
Sbjct:  733 AGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTL 793
[Close]
BLAST of mRNA_H-paniculata_contig45584.11432.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.530e-14
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    4 SGDWPFRAAVGSLLWLATVTRPDIANAVRDFARHSHNPCARHWAGVLKVLSYLNKNRSLGL 186
            +GD PFR  VGSL+W+A  TRPDI+NAVR  ARHSH P   HW    K+L+YL +   L L
Sbjct: 1000 AGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTL 1060
[Close]
BLAST of mRNA_H-paniculata_contig45584.11432.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.780e-14
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    4 SGDWPFRAAVGSLLWLATVTRPDIANAVRDFARHSHNPCARHWAGVLKVLSYLNKNRSLGL 186
            +GD PFR  VGSL+W+A  TRPDI+NAVR  ARHSH P   HW    K+L+YL +   L L
Sbjct:  434 AGDVPFRDVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLLETAHLTL 494
[Close]
BLAST of mRNA_H-paniculata_contig45584.11432.1 vs. uniprot
Match: A0A6H5J8M4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8M4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 6.650e-14
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 ESGDWPFRAAVGSLLWLATVTRPDIANAVRDFARHSHNPCARHWAGVLKVLSYL 162
            E+GD PFR  VG L+W+A  TRPDI+NAVR  ARHSH P  R W    K+L+YL
Sbjct:   11 EAGDVPFREVVGCLMWVANGTRPDISNAVRAVARHSHEPKKRDWKAAQKILNYL 64
[Close]
BLAST of mRNA_H-paniculata_contig45584.11432.1 vs. uniprot
Match: A0A6H5JGM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM1_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 6.700e-14
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 ESGDWPFRAAVGSLLWLATVTRPDIANAVRDFARHSHNPCARHWAGVLKVLSYL 162
            E+GD PFR  VGSL+W+A  TRPDI+NAVR  AR SH P   HW    K+LS+L
Sbjct:    5 EAGDMPFREVVGSLMWIANQTRPDISNAVRAVARQSHEPKKSHWKATQKILSFL 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig45584.11432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNZ2_9PHAE2.360e-1557.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8G9_9PHAE7.360e-1556.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW47_9PHAE1.130e-1454.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEI7_9PHAE2.830e-1459.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQD0_9PHAE3.060e-1455.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE3.520e-1455.74Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE3.530e-1455.74Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KN43_9PHAE4.780e-1455.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J8M4_9PHAE6.650e-1459.26Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGM1_9PHAE6.700e-1459.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig45584contigH-paniculata_contig45584:111..296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog67593.Physo131457
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930365.2020445-CDS-H-paniculata_contig45584:110..2961622930365.2020445-CDS-H-paniculata_contig45584:110..296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45584 111..296 +
1691481259.119849-CDS-H-paniculata_contig45584:110..2961691481259.119849-CDS-H-paniculata_contig45584:110..296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig45584 111..296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig45584.11432.1prot_H-paniculata_contig45584.11432.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig45584 111..296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig45584.11432.1

>prot_H-paniculata_contig45584.11432.1 ID=prot_H-paniculata_contig45584.11432.1|Name=mRNA_H-paniculata_contig45584.11432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
ESGDWPFRAAVGSLLWLATVTRPDIANAVRDFARHSHNPCARHWAGVLKV
LSYLNKNRSLGL
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mRNA from alignment at H-paniculata_contig45584:111..296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig45584.11432.1 ID=mRNA_H-paniculata_contig45584.11432.1|Name=mRNA_H-paniculata_contig45584.11432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at H-paniculata_contig45584:111..296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAGTGGAGACTGGCCGTTCAGGGCGGCAGTTGGGTCCCTTCTCTGGCT
TGCTACGGTGACCCGGCCGGACATAGCGAATGCTGTGCGAGATTTCGCGC
GACATTCTCACAACCCTTGCGCGCGTCACTGGGCTGGGGTTCTGAAAGTT
CTGTCGTATCTGAACAAGAACAGGTCTTTGGGACTA
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Coding sequence (CDS) from alignment at H-paniculata_contig45584:111..296+

>mRNA_H-paniculata_contig45584.11432.1 ID=mRNA_H-paniculata_contig45584.11432.1|Name=mRNA_H-paniculata_contig45584.11432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig45584:111..296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAGTGGAGACTGGCCGTTCAGGGCGGCAGTTGGGTCCCTTCTCTGGCT
TGCTACGGTGACCCGGCCGGACATAGCGAATGCTGTGCGAGATTTCGCGC
GACATTCTCACAACCCTTGCGCGCGTCACTGGGCTGGGGTTCTGAAAGTT
CTGTCGTATCTGAACAAGAACAGGTCTTTGGGACTAGAAAGTGGAGACTG
GCCGTTCAGGGCGGCAGTTGGGTCCCTTCTCTGGCTTGCTACGGTGACCC
GGCCGGACATAGCGAATGCTGTGCGAGATTTCGCGCGACATTCTCACAAC
CCTTGCGCGCGTCACTGGGCTGGGGTTCTGAAAGTTCTGTCGTATCTGAA
CAAGAACAGGTCTTTGGGACTA
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