mRNA_H-paniculata_contig4557.11431.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4557.11431.1
Unique NamemRNA_H-paniculata_contig4557.11431.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4557.11431.1 vs. uniprot
Match: A0A6H5JFV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV1_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 6.680e-27
Identity = 50/108 (46.30%), Postives = 63/108 (58.33%), Query Frame = 1
Query:    1 GTPLWCEYLSPWVLRKEFHTVLAAYGVEYLCSAR----------------------------------------SSRNRAVDRTIFWNLVLHFRDFCLPMTFLLAEEA 204
            GTPLWCEYL PWVLRKEFHT+L+AYGV+Y+CS R                                        ++  R+VDRT+FWNLV+HFR++CLP+TFLLA+ A
Sbjct:  112 GTPLWCEYLPPWVLRKEFHTILSAYGVQYVCSERFRLGLGPLEDGNGPTGGAAGGAQXXXXXXXXXXXXXXXXANASRRSVDRTVFWNLVVHFREYCLPITFLLADAA 219          
BLAST of mRNA_H-paniculata_contig4557.11431.1 vs. uniprot
Match: D7FMH7_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH7_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 4.530e-25
Identity = 50/108 (46.30%), Postives = 63/108 (58.33%), Query Frame = 1
Query:    1 GTPLWCEYLSPWVLRKEFHTVLAAYGVEYLCSAR----------------------------------------SSRNRAVDRTIFWNLVLHFRDFCLPMTFLLAEEA 204
            GTPLWCEYL PWVLRKEFHT+L+AYGV+Y+CS R                                        ++  R+VDRT+FWNLV+HFR++CLP+TFLLA+ A
Sbjct: 1137 GTPLWCEYLPPWVLRKEFHTILSAYGVQYVCSERFRLGLGPLEDGTGPAGGGAGGAQXXXXXXXXXXXRXXXXANASRRSVDRTVFWNLVVHFREYCLPITFLLADAA 1244          
BLAST of mRNA_H-paniculata_contig4557.11431.1 vs. uniprot
Match: A0A4D9DDS2_9STRA (UDENN domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDS2_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.580e-18
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 GTPLWCEYLSPWVLRKEFHTVLAAYGVEYLCSARSSRNRAVDRTIFWNLVLHFRDFCLPMTFLLAEE 201
            GTPLWCEYLSPWVLRKE  T+L   G++ + SA   ++ A   TIFWNL+L  RDF LP+ FLL   
Sbjct: 1280 GTPLWCEYLSPWVLRKEVQTILLNDGIDSILSAAFRKSSAASSTIFWNLMLWCRDFALPVAFLLQNS 1346          
BLAST of mRNA_H-paniculata_contig4557.11431.1 vs. uniprot
Match: A0A7S2RHS4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RHS4_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.740e-12
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 GTPLWCEYLSPWVLRKEFHTVLAAYGVEYLCSARSSRNRAVDRTIFWNLVLHFRDFCLPMTFL 189
            GT L+CE+L PW L KE  TVL  + +E++C  R    R  + T+FWNLVL+F +F LPM FL
Sbjct: 1001 GTELFCEFLPPWALSKEVQTVLLNHDIEFVCRERF---RETNPTVFWNLVLYFTEFNLPMEFL 1060          
BLAST of mRNA_H-paniculata_contig4557.11431.1 vs. uniprot
Match: A0A7S2RD19_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RD19_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.580e-12
Identity = 28/65 (43.08%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 GTPLWCEYLSPWVLRKEFHTVLAAY-GVEYLCSARSSRNRAVDRTIFWNLVLHFRDFCLPMTFLL 192
            GTPL+CE+LSPWVLRKE HTV      ++ +          ++ T++WN+V+ FR + +P+ FLL
Sbjct:   40 GTPLYCEFLSPWVLRKELHTVTKGVTSIDIILDPEWRNGIDINSTLWWNMVVSFRRYAIPILFLL 104          
BLAST of mRNA_H-paniculata_contig4557.11431.1 vs. uniprot
Match: A0A7S3PFS0_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFS0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.830e-12
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    4 TPLWCEYLSPWVLRKEFHTVLAAYGVEYLCSARSSRNRAVDRTIFWNLVLHFRDFCLPMTFL 189
            T L+CE+LSPWVL KE  T+L  + +E +C       R++   +FWNLVL+FR+F LPM FL
Sbjct:  199 TSLYCEFLSPWVLIKEVQTMLINHNIETICRRSFREKRSI---LFWNLVLYFREFNLPMNFL 257          
BLAST of mRNA_H-paniculata_contig4557.11431.1 vs. uniprot
Match: A0A7S1TYQ9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYQ9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.120e-11
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 1
Query:    1 GTPLWCEYLSPWVLRKEFHTVLAAYGVEYLCSARSSRNRAVDRTIFWNLVLHFRDFCLPMTFLLAEE 201
            GTPL+CE+LSPW L+KE   V++  G+  L S    RN     TI+WNL ++ + + LP+TFLL+  
Sbjct: 1529 GTPLYCEWLSPWTLQKETLKVISEDGIAELVSPSFRRNGGATATIWWNLFVYLQRYGLPVTFLLSAS 1595          
BLAST of mRNA_H-paniculata_contig4557.11431.1 vs. uniprot
Match: A0A7S0FQR8_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FQR8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.550e-10
Identity = 25/64 (39.06%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    1 GTPLWCEYLSPWVLRKEFHTVLAAYGVEYLCSARSSRNRAVDRTIFWNLVLHFRDFCLPMTFLL 192
             TPL+CE+LSPWVLRKE H +L   G++ +   +      ++ T++WN ++  + + LP++FLL
Sbjct:   37 ATPLYCEFLSPWVLRKEIHNILCG-GIDVMLQPKWRTVSDINATLWWNTIVWLKRYKLPISFLL 99          
BLAST of mRNA_H-paniculata_contig4557.11431.1 vs. uniprot
Match: A0A1E7EUT4_9STRA (DENN-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUT4_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.560e-10
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 GTPLWCEYLSPWVLRKEF-HTVLAAYGVEYLCSARSSRNRAVDRTIFWNLVLHFRDFCLPMTFLL 192
            GTPL+CE+LSPWVLRKE  H +  +  +E + +      R V  TI+WNL+  F+ + LP +FLL
Sbjct:  937 GTPLYCEFLSPWVLRKELSHIIGTSDSIEQILNPAWRSGRDVRATIWWNLIAMFKRYKLPFSFLL 1001          
BLAST of mRNA_H-paniculata_contig4557.11431.1 vs. uniprot
Match: A0A6V2ED04_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2ED04_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.530e-10
Identity = 28/65 (43.08%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    1 GTPLWCEYLSPWVLRKEFHTVLAA-YGVEYLCSARSSRNRAVDRTIFWNLVLHFRDFCLPMTFLL 192
             TPL+CEYLSPWV+RKE   V+ +  G+  L       N  ++ T++WNL++ F+ + LP+T+LL
Sbjct: 1474 ATPLYCEYLSPWVMRKELLNVMKSDNGIYSLLDPEWRSNADINATLWWNLIVSFKRYKLPLTYLL 1538          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4557.11431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFV1_9PHAE6.680e-2746.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMH7_ECTSI4.530e-2546.30UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A4D9DDS2_9STRA3.580e-1856.72UDENN domain-containing protein n=2 Tax=Monodopsid... [more]
A0A7S2RHS4_9STRA1.740e-1250.79Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S2RD19_9STRA2.580e-1243.08Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S3PFS0_9STRA6.830e-1250.00Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S1TYQ9_9STRA2.120e-1144.78Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0FQR8_9STRA1.550e-1039.06Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A1E7EUT4_9STRA2.560e-1046.15DENN-domain-containing protein n=1 Tax=Fragilariop... [more]
A0A6V2ED04_9STRA3.530e-1043.08Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4557contigH-paniculata_contig4557:15221..15556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue2.8e-21
Seed eggNOG ortholog2880.D7FMH7
KEGG koko:K20163
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2127@1,KOG2127@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930364.946587-CDS-H-paniculata_contig4557:15220..153381622930364.946587-CDS-H-paniculata_contig4557:15220..15338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4557 15221..15338 -
1691481259.0995169-CDS-H-paniculata_contig4557:15220..153381691481259.0995169-CDS-H-paniculata_contig4557:15220..15338Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4557 15221..15338 -
1622930364.9634802-CDS-H-paniculata_contig4557:15455..155561622930364.9634802-CDS-H-paniculata_contig4557:15455..15556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4557 15456..15556 -
1691481259.1096492-CDS-H-paniculata_contig4557:15455..155561691481259.1096492-CDS-H-paniculata_contig4557:15455..15556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4557 15456..15556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4557.11431.1prot_H-paniculata_contig4557.11431.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4557 15221..15556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4557.11431.1

>prot_H-paniculata_contig4557.11431.1 ID=prot_H-paniculata_contig4557.11431.1|Name=mRNA_H-paniculata_contig4557.11431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
GTPLWCEYLSPWVLRKEFHTVLAAYGVEYLCSARSSRNRAVDRTIFWNLV
LHFRDFCLPMTFLLAEEAVVGE*
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mRNA from alignment at H-paniculata_contig4557:15221..15556-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4557.11431.1 ID=mRNA_H-paniculata_contig4557.11431.1|Name=mRNA_H-paniculata_contig4557.11431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=336bp|location=Sequence derived from alignment at H-paniculata_contig4557:15221..15556- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTACCCCACTATGGTGCGAATACCTCTCTCCGTGGGTTCTCCGCAAGGA GTTTCACACAGTGTTAGCAGCGTACGGGGTAGAGTACCTGTGCTCCGCGC GGTTCCAGCTGGGTCTGGGTCCCGCAGAGGATGCGACGGTGGGATTAGGG GCTGTCGCGGCAAACGGCGGCGCTGACGCTGACACTAGCAGCACCAGCTT CATGAGCACCAGCTCCAGCTCCAGCAGAAATCGGGCAGTGGATCGAACGA TATTTTGGAACCTAGTGCTGCACTTTCGAGATTTCTGCTTGCCCATGACG TTTTTGCTGGCAGAAGAGGCAGTCGTGGGTGAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4557:15221..15556-

>mRNA_H-paniculata_contig4557.11431.1 ID=mRNA_H-paniculata_contig4557.11431.1|Name=mRNA_H-paniculata_contig4557.11431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig4557:15221..15556- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTACCCCACTATGGTGCGAATACCTCTCTCCGTGGGTTCTCCGCAAGGA
GTTTCACACAGTGTTAGCAGCGTACGGGGTAGAGTACCTGTGCTCCGCGC
GGGTACCCCACTATGGTGCGAATACCTCTCTCCGTGGGTTCTCCGCAAGG
AGTTTCACACAGTGTTAGCAGCGTACGGGGTAGAGTACCTGTGCTCCGCG
CGCTCCAGCAGAAATCGGGCAGTGGATCGAACGATATTTTGGAACCTAGT
GCTGCACTTTCGAGATTTCTGCTTGCCCATGACGTTTTTGCTGGCAGAAG
AGGCAGTCGTGGGTGAGTGACTCCAGCAGAAATCGGGCAGTGGATCGAAC
GATATTTTGGAACCTAGTGCTGCACTTTCGAGATTTCTGCTTGCCCATGA
CGTTTTTGCTGGCAGAAGAGGCAGTCGTGGGTGAGTGA
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