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Homology
BLAST of mRNA_H-paniculata_contig11797.1143.1 vs. uniprot
Match: D7FXZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ6_ECTSI) HSP 1 Score: 135 bits (341), Expect = 3.770e-31 Identity = 144/395 (36.46%), Postives = 192/395 (48.61%), Query Frame = 1
Query: 19 RRKIESAMSDLQATLKSRRERRADMDMTINTPSV-----STSALATTSDSPARASQSTGEGFAGVGAGTMVVSGAAQVG----LRGGTIHGVLPRSRRAARAGSRRAGSGGADG---------ANARLRFTTPDKS----SSATRRRAMQGGPGSTPGAGNPRHVTMTPASRSPVGP-SSRRQPNTGGKSNGTVPAGDGVGQQRRQRQPQQKEYERPGMRVLRVVGAQYKATSRVQEWVERAEAKVKVRPGLFGQTHNSPLPLIPVLSSMYAWSMVYELVCNTWALERAAAETAAGSSSSTSVLTYYEGKREDPLDRGRRLRRIQDVAGILAKESAKLSYSFPQREVGRTLTEDQLAVEFGNKPS-LTTPQR---TPSRLFTGDRGERSLHQPAS 1122
R KIE+A SDL ATLKSRRER D+ IN + S SA T P+R + T A + S ++ G +RGG IHGVLPR+RR AR G GG D A + F TP++ S+A++RR G G TP A P +P+ S V +SRR+ + E RPG+R++R+VG+QY AT V+ V +AEAKVK T + SSS+ +++ +RED L RGRRLRR ++ +LAKE+A+LS+SFP REVGRT+T+D+LA + GNKPS + TPQ+ TPSRL T RG S+HQP+S
Sbjct: 1584 RSKIEAAKSDLNATLKSRRER--GPDVAINPAANGRGANSQSATRTPQGPPSRHAAVTPASSRREAASPLPGSARSRAGGGGHVRGGAIHGVLPRTRRGARGG------GGGDATEAAPVPGTAGSSSSFATPERGVAPPSAASQRRRSLGVGGGTPSASVP-----SPSPGSTVSSRASRRRVSVAXXXXXXXXXXXXXXXXXXXXXXXXAE--RPGLRLMRIVGSQYDATDGVEAMVAKAEAKVKQLERA-AATVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSTLAMIAIGGKEREDALARGRRLRREREGLALLAKETARLSFSFPIREVGRTVTQDELAKKLGNKPSTIATPQQQQQTPSRLVTSGRGPGSVHQPSS 1962
BLAST of mRNA_H-paniculata_contig11797.1143.1 vs. uniprot
Match: A0A6H5JBC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC0_9PHAE) HSP 1 Score: 135 bits (340), Expect = 5.240e-31 Identity = 141/397 (35.52%), Postives = 190/397 (47.86%), Query Frame = 1
Query: 19 RRKIESAMSDLQATLKSRRERRADMDMTINTPSVSTSALATTS--------------DSPARASQSTGEGFAGVGAGTMVVSGAAQVGLRGGTIHGVLPRSRRAARAGSRRAGS---GGADGANARLRFTTPDKS----SSATRRRAMQGGPGSTPGAGNPRHVTMTPASRSPVGPSSRRQPNTGGKSNGTVPAGDGVGQQRRQRQPQQKEYERPGMRVLRVVGAQYKATSRVQEWVERAEAKVKVRPGLFGQTHNSPLPLIPVLSSMYAWSMVYELVCNTWALERAAAETAAGSS---SSTSVLTYYEGK-REDPLDRGRRLRRIQDVAGILAKESAKLSYSFPQREVGRTLTEDQLAVEFGNKPS-LTTPQ---RTPSRLFTGDRGERSLHQPAS 1122
R KIE+A SDL ATLKSRRER D+ IN + SA+ ++ D+PA + + G G +RGG IHGVLPR+RR AR+G + F TP++ S+A++RR G G TP A P + AS +SRR+ + G+SN ERPG+R++R+VG+QY AT V+ V +AEAKVK Q + + + SSTS + G+ RE+ L RGRRLRR ++ +LAKE+A+LS+SFP REVGRT+T+D+LA + GNKPS + TPQ RTPSRL T RG S+HQP+S
Sbjct: 1434 RSKIEAAKSDLNATLKSRRER--GPDVAINPAANGRSAIGQSATRTLQGPPSRHAAADTPASSRREAASPLPGSARSRAAGGGH----VRGGAIHGVLPRTRRGARSGXXXXATEXXXXXXXXXXXXXFATPERGVAPPSAASQRRXSLGVGGGTPSASVPCSAPGSTASSR----ASRRRVSVAGRSNXXXXXXXXXXXXXEL--VVAAVAERPGLRLMRIVGSQYDATDGVEAMVAKAEAKVK-------QLERAAVTVAATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTSAMIAVGGQEREEALARGRRLRREREGLALLAKETARLSFSFPIREVGRTVTQDELATKLGNKPSTIATPQQQQRTPSRLVTSGRGPGSVHQPSS 1811
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-09_002490.1 |
| Exons | 5 |
| Model size | 1122 |
| Cds size | 1122 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11797.1143.1 >prot_H-paniculata_contig11797.1143.1 ID=prot_H-paniculata_contig11797.1143.1|Name=mRNA_H-paniculata_contig11797.1143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=374bp
MLLSIQRRKIESAMSDLQATLKSRRERRADMDMTINTPSVSTSALATTSD
SPARASQSTGEGFAGVGAGTMVVSGAAQVGLRGGTIHGVLPRSRRAARAG
SRRAGSGGADGANARLRFTTPDKSSSATRRRAMQGGPGSTPGAGNPRHVT
MTPASRSPVGPSSRRQPNTGGKSNGTVPAGDGVGQQRRQRQPQQKEYERP
GMRVLRVVGAQYKATSRVQEWVERAEAKVKVRPGLFGQTHNSPLPLIPVL
SSMYAWSMVYELVCNTWALERAAAETAAGSSSSTSVLTYYEGKREDPLDR
GRRLRRIQDVAGILAKESAKLSYSFPQREVGRTLTEDQLAVEFGNKPSLT
TPQRTPSRLFTGDRGERSLHQPAS back to topmRNA from alignment at H-paniculata_contig11797:3434..7892- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig11797.1143.1 ID=mRNA_H-paniculata_contig11797.1143.1|Name=mRNA_H-paniculata_contig11797.1143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4459bp|location=Sequence derived from alignment at H-paniculata_contig11797:3434..7892- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCTATCTATACAGCGGAGGAAGATTGAATCGGCCATGTCTGACCT
ACAGGCCACGCTCAAGTCCCGCAGAGAGCGAAGGGCCGACATGGACATGA
CGATAAACACCCCGTCGGTGTCAACAAGCGCTCTAGCGACAACTTCAGAC
TCCCCTGCTAGGGCTTCCCAATCCACCGGGGAGTCGGCATCTGGTGAGTG
GCCGTAATCCAGCAGGGACAGGGGGGGGGGGGGGGGGGGGAGGTGGATAT
GACTGCTGGCCGGGGGCGGATGACTTGGACGGGGACGTAATTCATGCTTC
TCTCTTGGGCCTGGAACACGCGTTGAAGTGAATCGTGGTGCACGTAATGA
TTTCATTGGGCAAGCAGCCCACGCGAGCTGCTGCTGTTCTTGCTTCGCGA
AATTATTGTTTTCCCCTCCGCAATCAATGGATGATTTCTTTGGGACTTGG
AACAACGCAGGGGCTGCTGCTACAAGAGGATTTGCGGGGGTCGGTGCGGG
GACGATGGTGGTCTCGGGCGCGGCCCAGGTGGGGCTACGCGGTGGGACAA
TTCACGGAGTATTGCCCCGATCTCGCCGCGCGGCGAGGGCAGGGTCGCGG
CGTGCCGGGAGCGGCGGAGCTGACGGGGCGAATGCGGTAATATAACTGAA
TTTATATGTTGGTGGATCTGGTGTTGTTGTGCTCGTGATCGTGATTGTGG
TAGGATGGTCTCAGACTCCATAGCCCGTTGCATCACACCGTCCCACACAC
CTCGATGGCCAAGTAAATAAAAAAATGAAAATAAACACGTTTCGCTAATT
TCCGACGTAGATTCCGTACCAGGTGTTTTTGTTTTTGTTTTTGTTTTTGT
TTTTGTTTTTGTTTTTGTTTTAAACAAATTGTGATGTCTGCGGGGTTATG
GTCCATTTTCAGTTTGTTTGTTTTTTCTGTACGTCTGGTATGCTTGTCGT
GTCAGTGGTGCTAGTGCTGGTGCTGGTGTCAGTAGTGATGGCGGTAGTGC
TGGTGATAGCTTCATTTTGTGCACTCCGCCGTGTGTGCCCCTTCTCCGAT
TAAGCCCGACATGTCATATCAGCGGATTCCCTCATTCATAAGTTCAGTAG
CGCCCATCAACCCACACCCATTATCCCACACCCACGAAAACCTTAGACTC
TTTTATTCCTCGAACGTCTTGTTTTTCATGGCAAGCGGTTGCGCTTCACT
ACCCCGGACAAATCTTCTTCCGCTACAAGAAGGCGCGCAATGCAAGGTGG
CCCCGGTAGCACACCAGGCGCCGGTAACCCCCGGCACGTCACCATGACGC
CCGCGTCGCGGTCTCCTGTGGGGCCAAGTAGTCGGCGGCAGCCAAACACG
GGTGGGAAAAGCAATGGCACCGTTCCGGCTGGCGATGGGGTAGGGCAGCA
GCGGCGGCAACGGCAACCGCAACAGAAGGAGTACGAGCGGCCGGGAATGC
GAGTCCTGCGCGTGGTTGGGGCACAGTATAAGGCGACGTCGCGGGTGCAG
GAGTGGGTGGAGAGGGCCGAGGCGAAGGTTAAGGTGAGACCTGGTTTATT
TGGTCAAACCCATAACTCCCCCCTCCCCCTCATCCCCGTCCTCTCGAGTA
TGTATGCATGGTCAATGGTCTACGAACTAGTGTGCAACACTTGGGTACAT
CGGAAATTGCTCTGATAGAAACAAAGCTTTGCCTTCCCCAGGACGTGCGG
CTAATAGGTCTAATAAGTTCGGCGTGAAAACATAAGTACCCCCTGTCCCC
CCCCCCTCTCCTAATAGTTTTGTTGGCTTTTTTGTGGAATCAGTCACTAT
CGTCATGATTCAGCAGTTTGTGTAAACTGTATGAGCGTAAGTGCCTCCAG
TGTTGATTTCATTGGCTGTCATGGATTATAGGGCATGCTAGTTTTACTTC
TCAGAAAAGTTGGGTAAATTTTGGCGATGGTTTGTTTATTTTTTTTGTGG
ATATTCTGTGTTGTGTAAGAGCTATTGCATTTGGTGCTGGTTGGGTGTCT
AATGATGTTAGGGTACACTGGCACTTTCTCGCCTGTGGTCTTGGTTCTCT
AAATTTTGGATTGGGTATGAATTCGAGCAAGACTGTTTCACGCCATTGGG
TATTGATCGATTTGATTGGACACGGCCTTTTACATGGGGTGACGATGACC
TGGAACCAGAGCTGGTTTACTGAAGTTTATGTAGATTTCTGTTCAAATAT
TTTGCTTCTGTGATCCCACCCGCACCTGCCGTTTCTGTTTTGGCCCCCAA
AACTGAGGTAGGCTAATAGATCGATCGTGTCAAGTTGAGGTTTAAGAAAT
GGGAAAAACGAAGAATAAAACGGCCATAATCGATTTTGTTCAGTTGATTA
CTCACGTTTTATTCAGTGCAGACGTCCATTTTATGAAAAAAAACTTGTTT
TGTTTTTAACGTTACGTAAATGCGTTGCTGCAAAAGTGTATGTGTATGTG
TGTGTGTGTGTGTGTGTTTTTTATTTTTTTATTTATCATAATCCTGTAGA
ATTGTCTTGATTGGGTAGGTAGTACTTCTGTTATAAACTGTCCTGATTGG
ATAATGATCTCTGTTTTAATAAATGACCTATTTTATAGGCGCTCGAACGT
GCGGCGGCTGAGACAGCCGCCGGTTCCTCGTCGTCGACATCAGTGCTTAC
CTACTACGAAGGAAAGAGGGAAGACCCCCTAGACCGAGGACGACGGTTGC
GTAGAATTCAAGATGTGGCGGGCATTTTGGCGAAAGAGAGTGCAAAGCTT
TCCTACAGCTTCCCACAACGCGAGGTATGTATATGTATATATAATACGTG
TTTGTACAACACGCTTCCTATTAAATAATATCCCCTCCTTCCAGGAGACA
TGTATTTGGCAGCTTCATCACATATACCCTGAAACGTTTGTTCAGACCCA
AATCTGGAGGGGGGGAGGGAGAGGCTAGAATGTTCAGTATCCCCGCGTTT
AGACATGCTTACCCACCATTAACCCCCTGCTGGGTGTATTTTGCTTATTC
TCCATCGAAGCGAGACTTGAAATGCGTGCAGTACAAACTGTACTATTGTC
CATATCCGCGGCCAGTGACCGCGGGTCTGAGTGATGTACATGAGGCAAAT
AACTGATGCTCAACGACCCCTTTGGCACTCAAGTAACCCACTCGTACAGT
ATCAGCTCAGCATGCGATGCCTGCCTACTGCATCGTGGGATGCTGCGCTC
GCCTTGTGTGATGAATGTGACATCCGCCTTTTTATCCACGCGGCGCTTTC
CCTGTCAGTATCGTTGCCTCTCCCACCAACCAGGCGGCTTCATCACGCAC
TCGCCGAGAGGCACGTGCAGGGATTTTTCATGAGATTGGTAATACTCAGC
ATTTCGTCTTTGTCTTGACATGAAAACTTTCTCAAACCCTGCTTAAACTT
GTGTTAGCCCAAGAAGCAGACGCAAGGTGTAACGCTAGTAAATATGACGG
GACTTTTATGTAATTAATTAATTGCATAGCTCTATGGCAGAAGGAACAAA
AACGAGAAAAATGTTTTCAAGCCCCCCAAAAAGAGTGTGAGCGCGCGTGG
GGGGGGGGGGCTTGATTTGCAGCGGTACCTTCTGTAGTCAGTAAGGGTTC
CTCTACAAGTGATGTACATATGTATATATATATATATATATATATATATG
CATGTGTTAGGGAGGTACGTATTTAGAGGCCATGAGGTATTACTATATTG
TGCTGCGCTAGTTATGCATGCGAGTGGTGGATAACCTGTTTACGTCATTC
CAATTCTTTCAGGGGTGTTCTCAGGAACGGTATTTCAAAAGTGAACAAAT
GGTGCGGGAAATGACCTCCTCGGTATCGTGTCGGTAAATGGTATTCGGTA
TGTCGGCATATCGGTAGCACGGTACGGTACGTTACGGTATTTTGTCTTCT
CCCTATCATCTCCTACGGTATCTGGTATTGGCACAACATTTTGGTGCTCA
AACCTTACCCAAGTGCAAGATACAAAGCATAGTAATGAAATTCGTGCGTG
TAGTAAATGGTGCGTATGAGGAGTTCCCCGTTGCGACTCATGTATTCCGA
GAGCCCGTTCCAACGACATATAAACCTCCTAGTTTGAAGGCAGGGTATAG
GCATTGTTATGGGGGTTTCACGGCAAGGTAAAACAAGAAATGACTCTGAC
ACGACAGTAATCATGTTTGGCTGTCCGTGCGCGGTAACGGTACACGGGAA
GTCGATTTTTTCACGTAATCGGTACCAAATACCGCGCAATACAGCAGTAT
GTTTACGTCGGTATGATTACTGAGAATACCCCTGAATTCTCTCTCCATCG
TTGGGTGGCGGGGTATGTACGTAGGTCGGGAGGACTCTGACGGAGGACCA
GCTGGCGGTAGAGTTCGGCAACAAGCCCAGCCTAACCACACCCCAGAGAA
CGCCTTCTAGGCTGTTCACGGGGGATAGGGGAGAGCGCTCGCTTCACCAA
CCGGCGTCG back to topCoding sequence (CDS) from alignment at H-paniculata_contig11797:3434..7892- >mRNA_H-paniculata_contig11797.1143.1 ID=mRNA_H-paniculata_contig11797.1143.1|Name=mRNA_H-paniculata_contig11797.1143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2244bp|location=Sequence derived from alignment at H-paniculata_contig11797:3434..7892- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCTATCTATACAGCGGAGGAAGATTGAATCGGCCATGTCTGACCT
ACAGGCCACGCTCAAGTCCCGCAGAGAGCGAAGGGCCGACATGGACATGA
CGATAAACACCCCGTCGGTGTCAACAAGCGCTCTAGCGACAACTTCAGAC
TCCCCTGCTAGGGCTTCCCAATCCACCGGGGAATGTTGCTATCTATACAG
CGGAGGAAGATTGAATCGGCCATGTCTGACCTACAGGCCACGCTCAAGTC
CCGCAGAGAGCGAAGGGCCGACATGGACATGACGATAAACACCCCGTCGG
TGTCAACAAGCGCTCTAGCGACAACTTCAGACTCCCCTGCTAGGGCTTCC
CAATCCACCGGGGAAGGATTTGCGGGGGTCGGTGCGGGGACGATGGTGGT
CTCGGGCGCGGCCCAGGTGGGGCTACGCGGTGGGACAATTCACGGAGTAT
TGCCCCGATCTCGCCGCGCGGCGAGGGCAGGGTCGCGGCGTGCCGGGAGC
GGCGGAGCTGACGGGGCGAATGCGAGGATTTGCGGGGGTCGGTGCGGGGA
CGATGGTGGTCTCGGGCGCGGCCCAGGTGGGGCTACGCGGTGGGACAATT
CACGGAGTATTGCCCCGATCTCGCCGCGCGGCGAGGGCAGGGTCGCGGCG
TGCCGGGAGCGGCGGAGCTGACGGGGCGAATGCGCGGTTGCGCTTCACTA
CCCCGGACAAATCTTCTTCCGCTACAAGAAGGCGCGCAATGCAAGGTGGC
CCCGGTAGCACACCAGGCGCCGGTAACCCCCGGCACGTCACCATGACGCC
CGCGTCGCGGTCTCCTGTGGGGCCAAGTAGTCGGCGGCAGCCAAACACGG
GTGGGAAAAGCAATGGCACCGTTCCGGCTGGCGATGGGGTAGGGCAGCAG
CGGCGGCAACGGCAACCGCAACAGAAGGAGTACGAGCGGCCGGGAATGCG
AGTCCTGCGCGTGGTTGGGGCACAGTATAAGGCGACGTCGCGGGTGCAGG
AGTGGGTGGAGAGGGCCGAGGCGAAGGTTAAGGTGAGACCTGGTTTATTT
GGTCAAACCCATAACTCCCCCCTCCCCCTCATCCCCGTCCTCTCGAGTAT
GTATGCATGGTCAATGGTCTACGAACTAGTGTGCAACACTTGGCGGTTGC
GCTTCACTACCCCGGACAAATCTTCTTCCGCTACAAGAAGGCGCGCAATG
CAAGGTGGCCCCGGTAGCACACCAGGCGCCGGTAACCCCCGGCACGTCAC
CATGACGCCCGCGTCGCGGTCTCCTGTGGGGCCAAGTAGTCGGCGGCAGC
CAAACACGGGTGGGAAAAGCAATGGCACCGTTCCGGCTGGCGATGGGGTA
GGGCAGCAGCGGCGGCAACGGCAACCGCAACAGAAGGAGTACGAGCGGCC
GGGAATGCGAGTCCTGCGCGTGGTTGGGGCACAGTATAAGGCGACGTCGC
GGGTGCAGGAGTGGGTGGAGAGGGCCGAGGCGAAGGTTAAGGTGAGACCT
GGTTTATTTGGTCAAACCCATAACTCCCCCCTCCCCCTCATCCCCGTCCT
CTCGAGTATGTATGCATGGTCAATGGTCTACGAACTAGTGTGCAACACTT
GGGCGCTCGAACGTGCGGCGGCTGAGACAGCCGCCGGTTCCTCGTCGTCG
ACATCAGTGCTTACCTACTACGAAGGAAAGAGGGAAGACCCCCTAGACCG
AGGACGACGGTTGCGTAGAATTCAAGATGTGGCGGGCATTTTGGCGAAAG
AGAGTGCAAAGCTTTCCTACAGCTTCCCACAACGCGAGGCGCTCGAACGT
GCGGCGGCTGAGACAGCCGCCGGTTCCTCGTCGTCGACATCAGTGCTTAC
CTACTACGAAGGAAAGAGGGAAGACCCCCTAGACCGAGGACGACGGTTGC
GTAGAATTCAAGATGTGGCGGGCATTTTGGCGAAAGAGAGTGCAAAGCTT
TCCTACAGCTTCCCACAACGCGAGGTCGGGAGGACTCTGACGGAGGACCA
GCTGGCGGTAGAGTTCGGCAACAAGCCCAGCCTAACCACACCCCAGAGAA
CGCCTTCTAGGCTGTTCACGGGGGATAGGGGAGAGCGCTCGCTTCACCAA
CCGGCGTCGGTCGGGAGGACTCTGACGGAGGACCAGCTGGCGGTAGAGTT
CGGCAACAAGCCCAGCCTAACCACACCCCAGAGAACGCCTTCTAGGCTGT
TCACGGGGGATAGGGGAGAGCGCTCGCTTCACCAACCGGCGTCG back to top
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